data_6DY6
#
_model_server_result.job_id            xTmZ6Vu9ioRn7BBCik4Qrg 
_model_server_result.datetime_utc      '2024-11-15 22:04:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dy6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    6DY6 
#
_exptl.entry_id    6DY6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DY6 
_cell.length_a            35.72 
_cell.length_b            49 
_cell.length_c            117.53 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DY6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,H 1 1 
B,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
covale ? covale1 A SG CYS 98 A CYS 98 1_555 E CAB HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? 
covale ? covale2 A SG CYS 101 A CYS 101 1_555 E CAC HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
covale ? covale3 B SG CYS 98 B CYS 98 1_555 F CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? 
covale ? covale4 B SG CYS 101 B CYS 101 1_555 F CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? 
metalc ? metalc1 A SD MET 7 A MET 7 1_555 E FE HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc2 A NE2 HIS 63 A HIS 63 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? 
metalc ? metalc3 A NE2 HIS 67 A HIS 67 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc4 A NE2 HIS 71 A HIS 71 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc5 A OE2 GLU 97 A GLU 97 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc6 A NE2 HIS 102 A HIS 102 1_555 E FE HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc7 C MN MN . A MN 201 1_555 H O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc8 C MN MN . A MN 201 1_555 B NE2 HIS 67 B HIS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc9 C MN MN . A MN 201 1_555 B NE2 HIS 71 B HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc10 C MN MN . A MN 201 1_555 I O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc11 D MN MN . A MN 202 1_555 H O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc12 D MN MN . A MN 202 1_555 H O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? 
metalc ? metalc13 D MN MN . A MN 202 1_555 B OD1 ASP 74 B ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc14 D MN MN . A MN 202 1_555 I O HOH . B HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc15 B SD MET 7 B MET 7 1_555 F FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc16 B NE2 HIS 102 B HIS 102 1_555 F FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6DY6 
_atom_sites.fract_transf_matrix[1][1]    0.027996 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020408 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008508 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 201 1 MN MN . 
D 2 MN A 1 202 2 MN MN . 
E 3 HEC A 1 203 1 HEC HEC . 
F 3 HEC B 1 201 2 HEC HEC . 
G 4 1PE B 1 202 1 1PE 1PE . 
H 5 HOH A 1 301 93 HOH HOH . 
H 5 HOH A 2 302 17 HOH HOH . 
H 5 HOH A 3 303 132 HOH HOH . 
H 5 HOH A 4 304 107 HOH HOH . 
H 5 HOH A 5 305 27 HOH HOH . 
H 5 HOH A 6 306 7 HOH HOH . 
H 5 HOH A 7 307 14 HOH HOH . 
H 5 HOH A 8 308 41 HOH HOH . 
H 5 HOH A 9 309 87 HOH HOH . 
H 5 HOH A 10 310 95 HOH HOH . 
H 5 HOH A 11 311 143 HOH HOH . 
H 5 HOH A 12 312 2 HOH HOH . 
H 5 HOH A 13 313 28 HOH HOH . 
H 5 HOH A 14 314 40 HOH HOH . 
H 5 HOH A 15 315 66 HOH HOH . 
H 5 HOH A 16 316 69 HOH HOH . 
H 5 HOH A 17 317 125 HOH HOH . 
H 5 HOH A 18 318 103 HOH HOH . 
H 5 HOH A 19 319 75 HOH HOH . 
H 5 HOH A 20 320 63 HOH HOH . 
H 5 HOH A 21 321 39 HOH HOH . 
H 5 HOH A 22 322 45 HOH HOH . 
H 5 HOH A 23 323 23 HOH HOH . 
H 5 HOH A 24 324 36 HOH HOH . 
H 5 HOH A 25 325 53 HOH HOH . 
H 5 HOH A 26 326 130 HOH HOH . 
H 5 HOH A 27 327 131 HOH HOH . 
H 5 HOH A 28 328 90 HOH HOH . 
H 5 HOH A 29 329 56 HOH HOH . 
H 5 HOH A 30 330 57 HOH HOH . 
H 5 HOH A 31 331 128 HOH HOH . 
H 5 HOH A 32 332 82 HOH HOH . 
H 5 HOH A 33 333 24 HOH HOH . 
H 5 HOH A 34 334 35 HOH HOH . 
H 5 HOH A 35 335 83 HOH HOH . 
H 5 HOH A 36 336 3 HOH HOH . 
H 5 HOH A 37 337 65 HOH HOH . 
H 5 HOH A 38 338 81 HOH HOH . 
H 5 HOH A 39 339 8 HOH HOH . 
H 5 HOH A 40 340 51 HOH HOH . 
H 5 HOH A 41 341 76 HOH HOH . 
H 5 HOH A 42 342 135 HOH HOH . 
H 5 HOH A 43 343 4 HOH HOH . 
H 5 HOH A 44 344 9 HOH HOH . 
H 5 HOH A 45 345 115 HOH HOH . 
H 5 HOH A 46 346 100 HOH HOH . 
H 5 HOH A 47 347 11 HOH HOH . 
H 5 HOH A 48 348 70 HOH HOH . 
H 5 HOH A 49 349 47 HOH HOH . 
H 5 HOH A 50 350 80 HOH HOH . 
H 5 HOH A 51 351 46 HOH HOH . 
H 5 HOH A 52 352 94 HOH HOH . 
H 5 HOH A 53 353 25 HOH HOH . 
H 5 HOH A 54 354 61 HOH HOH . 
H 5 HOH A 55 355 29 HOH HOH . 
H 5 HOH A 56 356 44 HOH HOH . 
H 5 HOH A 57 357 106 HOH HOH . 
H 5 HOH A 58 358 111 HOH HOH . 
H 5 HOH A 59 359 67 HOH HOH . 
H 5 HOH A 60 360 5 HOH HOH . 
H 5 HOH A 61 361 116 HOH HOH . 
H 5 HOH A 62 362 126 HOH HOH . 
H 5 HOH A 63 363 105 HOH HOH . 
H 5 HOH A 64 364 91 HOH HOH . 
H 5 HOH A 65 365 34 HOH HOH . 
H 5 HOH A 66 366 104 HOH HOH . 
H 5 HOH A 67 367 122 HOH HOH . 
H 5 HOH A 68 368 72 HOH HOH . 
H 5 HOH A 69 369 86 HOH HOH . 
H 5 HOH A 70 370 58 HOH HOH . 
H 5 HOH A 71 371 74 HOH HOH . 
H 5 HOH A 72 372 96 HOH HOH . 
H 5 HOH A 73 373 59 HOH HOH . 
I 5 HOH B 1 301 148 HOH HOH . 
I 5 HOH B 2 302 97 HOH HOH . 
I 5 HOH B 3 303 84 HOH HOH . 
I 5 HOH B 4 304 138 HOH HOH . 
I 5 HOH B 5 305 98 HOH HOH . 
I 5 HOH B 6 306 55 HOH HOH . 
I 5 HOH B 7 307 32 HOH HOH . 
I 5 HOH B 8 308 6 HOH HOH . 
I 5 HOH B 9 309 147 HOH HOH . 
I 5 HOH B 10 310 88 HOH HOH . 
I 5 HOH B 11 311 16 HOH HOH . 
I 5 HOH B 12 312 1 HOH HOH . 
I 5 HOH B 13 313 64 HOH HOH . 
I 5 HOH B 14 314 31 HOH HOH . 
I 5 HOH B 15 315 73 HOH HOH . 
I 5 HOH B 16 316 10 HOH HOH . 
I 5 HOH B 17 317 101 HOH HOH . 
I 5 HOH B 18 318 15 HOH HOH . 
I 5 HOH B 19 319 99 HOH HOH . 
I 5 HOH B 20 320 43 HOH HOH . 
I 5 HOH B 21 321 52 HOH HOH . 
I 5 HOH B 22 322 12 HOH HOH . 
I 5 HOH B 23 323 33 HOH HOH . 
I 5 HOH B 24 324 92 HOH HOH . 
I 5 HOH B 25 325 26 HOH HOH . 
I 5 HOH B 26 326 79 HOH HOH . 
I 5 HOH B 27 327 21 HOH HOH . 
I 5 HOH B 28 328 120 HOH HOH . 
I 5 HOH B 29 329 54 HOH HOH . 
I 5 HOH B 30 330 149 HOH HOH . 
I 5 HOH B 31 331 68 HOH HOH . 
I 5 HOH B 32 332 37 HOH HOH . 
I 5 HOH B 33 333 13 HOH HOH . 
I 5 HOH B 34 334 119 HOH HOH . 
I 5 HOH B 35 335 20 HOH HOH . 
I 5 HOH B 36 336 42 HOH HOH . 
I 5 HOH B 37 337 108 HOH HOH . 
I 5 HOH B 38 338 145 HOH HOH . 
I 5 HOH B 39 339 30 HOH HOH . 
I 5 HOH B 40 340 19 HOH HOH . 
I 5 HOH B 41 341 112 HOH HOH . 
I 5 HOH B 42 342 146 HOH HOH . 
I 5 HOH B 43 343 50 HOH HOH . 
I 5 HOH B 44 344 136 HOH HOH . 
I 5 HOH B 45 345 62 HOH HOH . 
I 5 HOH B 46 346 117 HOH HOH . 
I 5 HOH B 47 347 129 HOH HOH . 
I 5 HOH B 48 348 150 HOH HOH . 
I 5 HOH B 49 349 89 HOH HOH . 
I 5 HOH B 50 350 137 HOH HOH . 
I 5 HOH B 51 351 141 HOH HOH . 
I 5 HOH B 52 352 71 HOH HOH . 
I 5 HOH B 53 353 142 HOH HOH . 
I 5 HOH B 54 354 114 HOH HOH . 
I 5 HOH B 55 355 133 HOH HOH . 
I 5 HOH B 56 356 139 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               32.053 
_atom_site.Cartn_y               2.394 
_atom_site.Cartn_z               122.691 
_atom_site.occupancy             0.38 
_atom_site.B_iso_or_equiv        22.32 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           374 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#