data_6DY6 # _model_server_result.job_id '_aUr22y25YJEIK6ZZ7P1-A' _model_server_result.datetime_utc '2024-11-15 21:49:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dy6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 6DY6 # _exptl.entry_id 6DY6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DY6 _cell.length_a 35.72 _cell.length_b 49 _cell.length_c 117.53 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 A SG CYS 98 A CYS 98 1_555 E CAB HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? covale ? covale2 A SG CYS 101 A CYS 101 1_555 E CAC HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? covale ? covale3 B SG CYS 98 B CYS 98 1_555 F CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? covale ? covale4 B SG CYS 101 B CYS 101 1_555 F CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc1 A SD MET 7 A MET 7 1_555 E FE HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc2 A NE2 HIS 63 A HIS 63 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc3 A NE2 HIS 67 A HIS 67 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc4 A NE2 HIS 71 A HIS 71 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc5 A OE2 GLU 97 A GLU 97 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc6 A NE2 HIS 102 A HIS 102 1_555 E FE HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc7 C MN MN . A MN 201 1_555 H O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc8 C MN MN . A MN 201 1_555 B NE2 HIS 67 B HIS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc9 C MN MN . A MN 201 1_555 B NE2 HIS 71 B HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc10 C MN MN . A MN 201 1_555 I O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc11 D MN MN . A MN 202 1_555 H O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc12 D MN MN . A MN 202 1_555 H O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc13 D MN MN . A MN 202 1_555 B OD1 ASP 74 B ASP 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc14 D MN MN . A MN 202 1_555 I O HOH . B HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc15 B SD MET 7 B MET 7 1_555 F FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc16 B NE2 HIS 102 B HIS 102 1_555 F FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 6DY6 _atom_sites.fract_transf_matrix[1][1] 0.027996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 201 1 MN MN . D 2 MN A 1 202 2 MN MN . E 3 HEC A 1 203 1 HEC HEC . F 3 HEC B 1 201 2 HEC HEC . G 4 1PE B 1 202 1 1PE 1PE . H 5 HOH A 1 301 93 HOH HOH . H 5 HOH A 2 302 17 HOH HOH . H 5 HOH A 3 303 132 HOH HOH . H 5 HOH A 4 304 107 HOH HOH . H 5 HOH A 5 305 27 HOH HOH . H 5 HOH A 6 306 7 HOH HOH . H 5 HOH A 7 307 14 HOH HOH . H 5 HOH A 8 308 41 HOH HOH . H 5 HOH A 9 309 87 HOH HOH . H 5 HOH A 10 310 95 HOH HOH . H 5 HOH A 11 311 143 HOH HOH . H 5 HOH A 12 312 2 HOH HOH . H 5 HOH A 13 313 28 HOH HOH . H 5 HOH A 14 314 40 HOH HOH . H 5 HOH A 15 315 66 HOH HOH . H 5 HOH A 16 316 69 HOH HOH . H 5 HOH A 17 317 125 HOH HOH . H 5 HOH A 18 318 103 HOH HOH . H 5 HOH A 19 319 75 HOH HOH . H 5 HOH A 20 320 63 HOH HOH . H 5 HOH A 21 321 39 HOH HOH . H 5 HOH A 22 322 45 HOH HOH . H 5 HOH A 23 323 23 HOH HOH . H 5 HOH A 24 324 36 HOH HOH . H 5 HOH A 25 325 53 HOH HOH . H 5 HOH A 26 326 130 HOH HOH . H 5 HOH A 27 327 131 HOH HOH . H 5 HOH A 28 328 90 HOH HOH . H 5 HOH A 29 329 56 HOH HOH . H 5 HOH A 30 330 57 HOH HOH . H 5 HOH A 31 331 128 HOH HOH . H 5 HOH A 32 332 82 HOH HOH . H 5 HOH A 33 333 24 HOH HOH . H 5 HOH A 34 334 35 HOH HOH . H 5 HOH A 35 335 83 HOH HOH . H 5 HOH A 36 336 3 HOH HOH . H 5 HOH A 37 337 65 HOH HOH . H 5 HOH A 38 338 81 HOH HOH . H 5 HOH A 39 339 8 HOH HOH . H 5 HOH A 40 340 51 HOH HOH . H 5 HOH A 41 341 76 HOH HOH . H 5 HOH A 42 342 135 HOH HOH . H 5 HOH A 43 343 4 HOH HOH . H 5 HOH A 44 344 9 HOH HOH . H 5 HOH A 45 345 115 HOH HOH . H 5 HOH A 46 346 100 HOH HOH . H 5 HOH A 47 347 11 HOH HOH . H 5 HOH A 48 348 70 HOH HOH . H 5 HOH A 49 349 47 HOH HOH . H 5 HOH A 50 350 80 HOH HOH . H 5 HOH A 51 351 46 HOH HOH . H 5 HOH A 52 352 94 HOH HOH . H 5 HOH A 53 353 25 HOH HOH . H 5 HOH A 54 354 61 HOH HOH . H 5 HOH A 55 355 29 HOH HOH . H 5 HOH A 56 356 44 HOH HOH . H 5 HOH A 57 357 106 HOH HOH . H 5 HOH A 58 358 111 HOH HOH . H 5 HOH A 59 359 67 HOH HOH . H 5 HOH A 60 360 5 HOH HOH . H 5 HOH A 61 361 116 HOH HOH . H 5 HOH A 62 362 126 HOH HOH . H 5 HOH A 63 363 105 HOH HOH . H 5 HOH A 64 364 91 HOH HOH . H 5 HOH A 65 365 34 HOH HOH . H 5 HOH A 66 366 104 HOH HOH . H 5 HOH A 67 367 122 HOH HOH . H 5 HOH A 68 368 72 HOH HOH . H 5 HOH A 69 369 86 HOH HOH . H 5 HOH A 70 370 58 HOH HOH . H 5 HOH A 71 371 74 HOH HOH . H 5 HOH A 72 372 96 HOH HOH . H 5 HOH A 73 373 59 HOH HOH . I 5 HOH B 1 301 148 HOH HOH . I 5 HOH B 2 302 97 HOH HOH . I 5 HOH B 3 303 84 HOH HOH . I 5 HOH B 4 304 138 HOH HOH . I 5 HOH B 5 305 98 HOH HOH . I 5 HOH B 6 306 55 HOH HOH . I 5 HOH B 7 307 32 HOH HOH . I 5 HOH B 8 308 6 HOH HOH . I 5 HOH B 9 309 147 HOH HOH . I 5 HOH B 10 310 88 HOH HOH . I 5 HOH B 11 311 16 HOH HOH . I 5 HOH B 12 312 1 HOH HOH . I 5 HOH B 13 313 64 HOH HOH . I 5 HOH B 14 314 31 HOH HOH . I 5 HOH B 15 315 73 HOH HOH . I 5 HOH B 16 316 10 HOH HOH . I 5 HOH B 17 317 101 HOH HOH . I 5 HOH B 18 318 15 HOH HOH . I 5 HOH B 19 319 99 HOH HOH . I 5 HOH B 20 320 43 HOH HOH . I 5 HOH B 21 321 52 HOH HOH . I 5 HOH B 22 322 12 HOH HOH . I 5 HOH B 23 323 33 HOH HOH . I 5 HOH B 24 324 92 HOH HOH . I 5 HOH B 25 325 26 HOH HOH . I 5 HOH B 26 326 79 HOH HOH . I 5 HOH B 27 327 21 HOH HOH . I 5 HOH B 28 328 120 HOH HOH . I 5 HOH B 29 329 54 HOH HOH . I 5 HOH B 30 330 149 HOH HOH . I 5 HOH B 31 331 68 HOH HOH . I 5 HOH B 32 332 37 HOH HOH . I 5 HOH B 33 333 13 HOH HOH . I 5 HOH B 34 334 119 HOH HOH . I 5 HOH B 35 335 20 HOH HOH . I 5 HOH B 36 336 42 HOH HOH . I 5 HOH B 37 337 108 HOH HOH . I 5 HOH B 38 338 145 HOH HOH . I 5 HOH B 39 339 30 HOH HOH . I 5 HOH B 40 340 19 HOH HOH . I 5 HOH B 41 341 112 HOH HOH . I 5 HOH B 42 342 146 HOH HOH . I 5 HOH B 43 343 50 HOH HOH . I 5 HOH B 44 344 136 HOH HOH . I 5 HOH B 45 345 62 HOH HOH . I 5 HOH B 46 346 117 HOH HOH . I 5 HOH B 47 347 129 HOH HOH . I 5 HOH B 48 348 150 HOH HOH . I 5 HOH B 49 349 89 HOH HOH . I 5 HOH B 50 350 137 HOH HOH . I 5 HOH B 51 351 141 HOH HOH . I 5 HOH B 52 352 71 HOH HOH . I 5 HOH B 53 353 142 HOH HOH . I 5 HOH B 54 354 114 HOH HOH . I 5 HOH B 55 355 133 HOH HOH . I 5 HOH B 56 356 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . A . G 4 38.933 -0.581 144.24 0.54 40.75 ? OH2 1PE 202 B 1 HETATM 2 O OH2 1PE . B . G 4 38.857 -0.077 144.331 0.46 39.39 ? OH2 1PE 202 B 1 HETATM 3 C C12 1PE . A . G 4 37.82 -0.428 143.407 0.54 38.88 ? C12 1PE 202 B 1 HETATM 4 C C12 1PE . B . G 4 37.816 -0.108 143.398 0.46 39.13 ? C12 1PE 202 B 1 HETATM 5 C C22 1PE . A . G 4 38.163 -0.925 142.004 0.54 37.86 ? C22 1PE 202 B 1 HETATM 6 C C22 1PE . B . G 4 38.323 -0.631 142.056 0.46 37.99 ? C22 1PE 202 B 1 HETATM 7 O OH3 1PE . A . G 4 39.38 -0.365 141.593 0.54 38.93 ? OH3 1PE 202 B 1 HETATM 8 O OH3 1PE . B . G 4 39.441 0.115 141.661 0.46 38.32 ? OH3 1PE 202 B 1 HETATM 9 C C13 1PE . A . G 4 40.807 0.563 139.913 0.54 35.33 ? C13 1PE 202 B 1 HETATM 10 C C13 1PE . B . G 4 40.875 0.999 139.978 0.46 35.11 ? C13 1PE 202 B 1 HETATM 11 C C23 1PE . A . G 4 39.43 -0.011 140.238 0.54 34.93 ? C23 1PE 202 B 1 HETATM 12 C C23 1PE . B . G 4 39.509 0.391 140.29 0.46 35.37 ? C23 1PE 202 B 1 HETATM 13 O OH4 1PE . A . G 4 40.665 1.775 139.229 0.54 32.01 ? OH4 1PE 202 B 1 HETATM 14 O OH4 1PE . B . G 4 40.729 2.229 139.328 0.46 32.35 ? OH4 1PE 202 B 1 HETATM 15 C C14 1PE . A . G 4 40.64 4.174 139.265 0.54 31.4 ? C14 1PE 202 B 1 HETATM 16 C C14 1PE . B . G 4 40.697 4.618 139.43 0.46 31.65 ? C14 1PE 202 B 1 HETATM 17 C C24 1PE . A . G 4 40.875 2.888 140.051 0.54 36.46 ? C24 1PE 202 B 1 HETATM 18 C C24 1PE . B . G 4 40.913 3.315 140.19 0.46 35.79 ? C24 1PE 202 B 1 HETATM 19 O OH5 1PE . A . G 4 40.211 5.157 140.163 0.54 30.4 ? OH5 1PE 202 B 1 HETATM 20 O OH5 1PE . B . G 4 39.741 5.348 140.141 0.46 32.42 ? OH5 1PE 202 B 1 HETATM 21 C C15 1PE . A . G 4 38.703 6.933 140.731 0.54 33.77 ? C15 1PE 202 B 1 HETATM 22 C C15 1PE . B . G 4 40.403 7.034 141.707 0.46 32.58 ? C15 1PE 202 B 1 HETATM 23 C C25 1PE . A . G 4 39.213 5.988 139.644 0.54 31.61 ? C25 1PE 202 B 1 HETATM 24 C C25 1PE . B . G 4 40.028 6.711 140.264 0.46 30.38 ? C25 1PE 202 B 1 HETATM 25 O OH6 1PE . A . G 4 37.741 6.292 141.517 0.54 38.13 ? OH6 1PE 202 B 1 HETATM 26 O OH6 1PE . B . G 4 40.826 8.367 141.812 0.46 39.64 ? OH6 1PE 202 B 1 HETATM 27 C C16 1PE . A . G 4 37.758 6.613 143.905 0.54 37.56 ? C16 1PE 202 B 1 HETATM 28 C C16 1PE . B . G 4 41.797 8.274 144.022 0.46 35.21 ? C16 1PE 202 B 1 HETATM 29 C C26 1PE . A . G 4 38.257 5.791 142.722 0.54 30.85 ? C26 1PE 202 B 1 HETATM 30 C C26 1PE . B . G 4 42.014 8.554 142.536 0.46 28.72 ? C26 1PE 202 B 1 HETATM 31 O OH7 1PE . A . G 4 37.063 5.768 144.781 0.54 41.03 ? OH7 1PE 202 B 1 HETATM 32 O OH7 1PE . B . G 4 42.074 6.926 144.292 0.46 29.56 ? OH7 1PE 202 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #