data_6DY7
#
_model_server_result.job_id            spaz-zcax7NodhKarDJvzQ 
_model_server_result.datetime_utc      '2024-10-21 09:28:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dy7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6DY7 
#
_exptl.entry_id    6DY7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              286.157 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[3-(2,4-dichlorophenoxy)propyl]-1H-imidazol-2-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DY7 
_cell.length_a            81.162 
_cell.length_b            86.272 
_cell.length_c            40.594 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DY7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C12 H13 Cl2 N3 O' 
_chem_comp.formula_weight    286.157 
_chem_comp.id                HH7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[3-(2,4-dichlorophenoxy)propyl]-1H-imidazol-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 N16 HH7 sing 138 n y 
C15 C14 HH7 doub 139 n y 
N16 C12 HH7 doub 140 n y 
C14 N13 HH7 sing 141 n y 
C12 N13 HH7 sing 142 n y 
C12 N11 HH7 sing 143 n n 
N11 C10 HH7 sing 144 n n 
C10 C09 HH7 sing 145 n n 
C09 C08 HH7 sing 146 n n 
C08 O07 HH7 sing 147 n n 
O07 C06 HH7 sing 148 n n 
CL2 C04 HH7 sing 149 n n 
C06 C04 HH7 doub 150 n y 
C06 C17 HH7 sing 151 n y 
C04 C03 HH7 sing 152 n y 
C17 C18 HH7 doub 153 n y 
C03 C02 HH7 doub 154 n y 
C18 C02 HH7 sing 155 n y 
C02 CL1 HH7 sing 156 n n 
N11 H1 HH7 sing 157 n n 
C03 H2 HH7 sing 158 n n 
C08 H3 HH7 sing 159 n n 
C08 H4 HH7 sing 160 n n 
C09 H5 HH7 sing 161 n n 
C09 H6 HH7 sing 162 n n 
C10 H7 HH7 sing 163 n n 
C10 H8 HH7 sing 164 n n 
N13 H9 HH7 sing 165 n n 
C14 H10 HH7 sing 166 n n 
C15 H11 HH7 sing 167 n n 
C17 H13 HH7 sing 168 n n 
C18 H14 HH7 sing 169 n n 
#
_atom_sites.entry_id                     6DY7 
_atom_sites.fract_transf_matrix[1][1]    0.012321 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011591 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024634 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HH7 A 1 401 401 HH7 ROC . 
C 3 DMS A 1 402 501 DMS DMS . 
D 4 SO4 A 1 403 502 SO4 SO4 . 
E 5 HOH A 1 501 25 HOH HOH . 
E 5 HOH A 2 502 42 HOH HOH . 
E 5 HOH A 3 503 130 HOH HOH . 
E 5 HOH A 4 504 133 HOH HOH . 
E 5 HOH A 5 505 98 HOH HOH . 
E 5 HOH A 6 506 22 HOH HOH . 
E 5 HOH A 7 507 116 HOH HOH . 
E 5 HOH A 8 508 155 HOH HOH . 
E 5 HOH A 9 509 20 HOH HOH . 
E 5 HOH A 10 510 75 HOH HOH . 
E 5 HOH A 11 511 81 HOH HOH . 
E 5 HOH A 12 512 87 HOH HOH . 
E 5 HOH A 13 513 32 HOH HOH . 
E 5 HOH A 14 514 175 HOH HOH . 
E 5 HOH A 15 515 154 HOH HOH . 
E 5 HOH A 16 516 89 HOH HOH . 
E 5 HOH A 17 517 14 HOH HOH . 
E 5 HOH A 18 518 83 HOH HOH . 
E 5 HOH A 19 519 19 HOH HOH . 
E 5 HOH A 20 520 93 HOH HOH . 
E 5 HOH A 21 521 2 HOH HOH . 
E 5 HOH A 22 522 34 HOH HOH . 
E 5 HOH A 23 523 26 HOH HOH . 
E 5 HOH A 24 524 149 HOH HOH . 
E 5 HOH A 25 525 8 HOH HOH . 
E 5 HOH A 26 526 144 HOH HOH . 
E 5 HOH A 27 527 88 HOH HOH . 
E 5 HOH A 28 528 106 HOH HOH . 
E 5 HOH A 29 529 95 HOH HOH . 
E 5 HOH A 30 530 72 HOH HOH . 
E 5 HOH A 31 531 141 HOH HOH . 
E 5 HOH A 32 532 80 HOH HOH . 
E 5 HOH A 33 533 99 HOH HOH . 
E 5 HOH A 34 534 57 HOH HOH . 
E 5 HOH A 35 535 92 HOH HOH . 
E 5 HOH A 36 536 21 HOH HOH . 
E 5 HOH A 37 537 91 HOH HOH . 
E 5 HOH A 38 538 59 HOH HOH . 
E 5 HOH A 39 539 56 HOH HOH . 
E 5 HOH A 40 540 100 HOH HOH . 
E 5 HOH A 41 541 168 HOH HOH . 
E 5 HOH A 42 542 53 HOH HOH . 
E 5 HOH A 43 543 16 HOH HOH . 
E 5 HOH A 44 544 63 HOH HOH . 
E 5 HOH A 45 545 69 HOH HOH . 
E 5 HOH A 46 546 65 HOH HOH . 
E 5 HOH A 47 547 23 HOH HOH . 
E 5 HOH A 48 548 90 HOH HOH . 
E 5 HOH A 49 549 33 HOH HOH . 
E 5 HOH A 50 550 49 HOH HOH . 
E 5 HOH A 51 551 113 HOH HOH . 
E 5 HOH A 52 552 131 HOH HOH . 
E 5 HOH A 53 553 174 HOH HOH . 
E 5 HOH A 54 554 28 HOH HOH . 
E 5 HOH A 55 555 179 HOH HOH . 
E 5 HOH A 56 556 54 HOH HOH . 
E 5 HOH A 57 557 27 HOH HOH . 
E 5 HOH A 58 558 4 HOH HOH . 
E 5 HOH A 59 559 46 HOH HOH . 
E 5 HOH A 60 560 10 HOH HOH . 
E 5 HOH A 61 561 24 HOH HOH . 
E 5 HOH A 62 562 11 HOH HOH . 
E 5 HOH A 63 563 64 HOH HOH . 
E 5 HOH A 64 564 71 HOH HOH . 
E 5 HOH A 65 565 112 HOH HOH . 
E 5 HOH A 66 566 52 HOH HOH . 
E 5 HOH A 67 567 7 HOH HOH . 
E 5 HOH A 68 568 37 HOH HOH . 
E 5 HOH A 69 569 17 HOH HOH . 
E 5 HOH A 70 570 111 HOH HOH . 
E 5 HOH A 71 571 3 HOH HOH . 
E 5 HOH A 72 572 134 HOH HOH . 
E 5 HOH A 73 573 5 HOH HOH . 
E 5 HOH A 74 574 94 HOH HOH . 
E 5 HOH A 75 575 125 HOH HOH . 
E 5 HOH A 76 576 1 HOH HOH . 
E 5 HOH A 77 577 109 HOH HOH . 
E 5 HOH A 78 578 181 HOH HOH . 
E 5 HOH A 79 579 97 HOH HOH . 
E 5 HOH A 80 580 55 HOH HOH . 
E 5 HOH A 81 581 40 HOH HOH . 
E 5 HOH A 82 582 6 HOH HOH . 
E 5 HOH A 83 583 142 HOH HOH . 
E 5 HOH A 84 584 30 HOH HOH . 
E 5 HOH A 85 585 38 HOH HOH . 
E 5 HOH A 86 586 139 HOH HOH . 
E 5 HOH A 87 587 124 HOH HOH . 
E 5 HOH A 88 588 143 HOH HOH . 
E 5 HOH A 89 589 35 HOH HOH . 
E 5 HOH A 90 590 9 HOH HOH . 
E 5 HOH A 91 591 44 HOH HOH . 
E 5 HOH A 92 592 48 HOH HOH . 
E 5 HOH A 93 593 68 HOH HOH . 
E 5 HOH A 94 594 126 HOH HOH . 
E 5 HOH A 95 595 31 HOH HOH . 
E 5 HOH A 96 596 156 HOH HOH . 
E 5 HOH A 97 597 150 HOH HOH . 
E 5 HOH A 98 598 73 HOH HOH . 
E 5 HOH A 99 599 129 HOH HOH . 
E 5 HOH A 100 600 15 HOH HOH . 
E 5 HOH A 101 601 13 HOH HOH . 
E 5 HOH A 102 602 67 HOH HOH . 
E 5 HOH A 103 603 117 HOH HOH . 
E 5 HOH A 104 604 18 HOH HOH . 
E 5 HOH A 105 605 39 HOH HOH . 
E 5 HOH A 106 606 66 HOH HOH . 
E 5 HOH A 107 607 50 HOH HOH . 
E 5 HOH A 108 608 78 HOH HOH . 
E 5 HOH A 109 609 121 HOH HOH . 
E 5 HOH A 110 610 163 HOH HOH . 
E 5 HOH A 111 611 61 HOH HOH . 
E 5 HOH A 112 612 180 HOH HOH . 
E 5 HOH A 113 613 85 HOH HOH . 
E 5 HOH A 114 614 159 HOH HOH . 
E 5 HOH A 115 615 62 HOH HOH . 
E 5 HOH A 116 616 74 HOH HOH . 
E 5 HOH A 117 617 51 HOH HOH . 
E 5 HOH A 118 618 47 HOH HOH . 
E 5 HOH A 119 619 135 HOH HOH . 
E 5 HOH A 120 620 158 HOH HOH . 
E 5 HOH A 121 621 132 HOH HOH . 
E 5 HOH A 122 622 36 HOH HOH . 
E 5 HOH A 123 623 41 HOH HOH . 
E 5 HOH A 124 624 43 HOH HOH . 
E 5 HOH A 125 625 176 HOH HOH . 
E 5 HOH A 126 626 101 HOH HOH . 
E 5 HOH A 127 627 79 HOH HOH . 
E 5 HOH A 128 628 12 HOH HOH . 
E 5 HOH A 129 629 29 HOH HOH . 
E 5 HOH A 130 630 127 HOH HOH . 
E 5 HOH A 131 631 157 HOH HOH . 
E 5 HOH A 132 632 147 HOH HOH . 
E 5 HOH A 133 633 137 HOH HOH . 
E 5 HOH A 134 634 86 HOH HOH . 
E 5 HOH A 135 635 82 HOH HOH . 
E 5 HOH A 136 636 119 HOH HOH . 
E 5 HOH A 137 637 177 HOH HOH . 
E 5 HOH A 138 638 151 HOH HOH . 
E 5 HOH A 139 639 115 HOH HOH . 
E 5 HOH A 140 640 45 HOH HOH . 
E 5 HOH A 141 641 182 HOH HOH . 
E 5 HOH A 142 642 108 HOH HOH . 
E 5 HOH A 143 643 96 HOH HOH . 
E 5 HOH A 144 644 170 HOH HOH . 
E 5 HOH A 145 645 145 HOH HOH . 
E 5 HOH A 146 646 160 HOH HOH . 
E 5 HOH A 147 647 164 HOH HOH . 
E 5 HOH A 148 648 148 HOH HOH . 
E 5 HOH A 149 649 184 HOH HOH . 
E 5 HOH A 150 650 136 HOH HOH . 
E 5 HOH A 151 651 114 HOH HOH . 
E 5 HOH A 152 652 123 HOH HOH . 
E 5 HOH A 153 653 105 HOH HOH . 
E 5 HOH A 154 654 110 HOH HOH . 
E 5 HOH A 155 655 178 HOH HOH . 
E 5 HOH A 156 656 60 HOH HOH . 
E 5 HOH A 157 657 58 HOH HOH . 
E 5 HOH A 158 658 169 HOH HOH . 
E 5 HOH A 159 659 76 HOH HOH . 
E 5 HOH A 160 660 185 HOH HOH . 
E 5 HOH A 161 661 70 HOH HOH . 
E 5 HOH A 162 662 161 HOH HOH . 
E 5 HOH A 163 663 171 HOH HOH . 
E 5 HOH A 164 664 152 HOH HOH . 
E 5 HOH A 165 665 173 HOH HOH . 
E 5 HOH A 166 666 167 HOH HOH . 
E 5 HOH A 167 667 104 HOH HOH . 
E 5 HOH A 168 668 128 HOH HOH . 
E 5 HOH A 169 669 165 HOH HOH . 
E 5 HOH A 170 670 166 HOH HOH . 
E 5 HOH A 171 671 162 HOH HOH . 
E 5 HOH A 172 672 122 HOH HOH . 
E 5 HOH A 173 673 146 HOH HOH . 
E 5 HOH A 174 674 84 HOH HOH . 
E 5 HOH A 175 675 172 HOH HOH . 
E 5 HOH A 176 676 138 HOH HOH . 
E 5 HOH A 177 677 107 HOH HOH . 
E 5 HOH A 178 678 140 HOH HOH . 
E 5 HOH A 179 679 153 HOH HOH . 
E 5 HOH A 180 680 77 HOH HOH . 
E 5 HOH A 181 681 183 HOH HOH . 
E 5 HOH A 182 682 120 HOH HOH . 
E 5 HOH A 183 683 102 HOH HOH . 
E 5 HOH A 184 684 103 HOH HOH . 
E 5 HOH A 185 685 118 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N11 HH7 . . . B 2 -11.164 25.643 -1.989 1 34.86 ? N11 HH7 401 A 1 
HETATM 2 CL CL1 HH7 . . . B 2 -6.923 25.185 6.714 0.53 47.01 ? CL1 HH7 401 A 1 
HETATM 3 C C02 HH7 . . . B 2 -7.578 25.51 5.088 1 57.09 ? C02 HH7 401 A 1 
HETATM 4 C C03 HH7 . . . B 2 -6.652 26.008 3.995 1 57.86 ? C03 HH7 401 A 1 
HETATM 5 C C04 HH7 . . . B 2 -7.195 26.291 2.605 1 59.11 ? C04 HH7 401 A 1 
HETATM 6 CL CL2 HH7 . . . B 2 -6.099 26.876 1.329 0.59 38.91 ? CL2 HH7 401 A 1 
HETATM 7 C C06 HH7 . . . B 2 -8.674 26.081 2.289 1 56.62 ? C06 HH7 401 A 1 
HETATM 8 O O07 HH7 . . . B 2 -9.135 26.355 0.99 1 49.75 ? O07 HH7 401 A 1 
HETATM 9 C C08 HH7 . . . B 2 -10.517 26.231 0.796 1 45.97 ? C08 HH7 401 A 1 
HETATM 10 C C09 HH7 . . . B 2 -10.823 24.819 0.301 1 43.06 ? C09 HH7 401 A 1 
HETATM 11 C C10 HH7 . . . B 2 -10.438 24.687 -1.171 1 36.9 ? C10 HH7 401 A 1 
HETATM 12 C C12 HH7 . . . B 2 -12.396 25.245 -2.638 1 32.61 ? C12 HH7 401 A 1 
HETATM 13 N N13 HH7 . . . B 2 -13.02 23.921 -2.544 1 32.68 ? N13 HH7 401 A 1 
HETATM 14 C C14 HH7 . . . B 2 -14.225 23.937 -3.335 1 34.91 ? C14 HH7 401 A 1 
HETATM 15 C C15 HH7 . . . B 2 -14.364 25.316 -3.937 1 36.34 ? C15 HH7 401 A 1 
HETATM 16 N N16 HH7 . . . B 2 -13.223 26.095 -3.497 1 34.54 1 N16 HH7 401 A 1 
HETATM 17 C C17 HH7 . . . B 2 -9.618 25.576 3.39 1 56.82 ? C17 HH7 401 A 1 
HETATM 18 C C18 HH7 . . . B 2 -9.062 25.292 4.792 1 58.33 ? C18 HH7 401 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           18 
#