data_6DY8
#
_model_server_result.job_id            iyZ2vWoSVhLEJaz0RFiJhg 
_model_server_result.datetime_utc      '2024-11-15 21:53:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dy8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    6DY8 
#
_exptl.entry_id    6DY8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.39 
_cell.angle_gamma         90 
_cell.entry_id            6DY8 
_cell.length_a            75.661 
_cell.length_b            37.591 
_cell.length_c            77.323 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DY8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        3 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,K 1 1 
B,F,G,L 2 1 
C,H,I,M 3 1 
D,J,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 96 B CYS 96 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A SG CYS 98 A CYS 98 1_555 E CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale2 A SG CYS 101 A CYS 101 1_555 E CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.741 ? 
covale ? covale3 B SG CYS 98 B CYS 98 1_555 G CAB HEC . B HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.676 ? 
covale ? covale4 B SG CYS 101 B CYS 101 1_555 G CAC HEC . B HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? 
covale ? covale5 C SG CYS 98 C CYS 98 1_555 I CAB HEC . C HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.743 ? 
covale ? covale6 C SG CYS 101 C CYS 101 1_555 I CAC HEC . C HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.737 ? 
covale ? covale7 D SG CYS 98 D CYS 98 1_555 J CAB HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale8 D SG CYS 101 D CYS 101 1_555 J CAC HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.638 ? 
metalc ? metalc1 A SD MET 7 A MET 7 1_555 E FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 H MN MN . C MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc3 A NE2 HIS 71 A HIS 71 1_555 H MN MN . C MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc4 A OE1 GLU 97 A GLU 97 1_555 H MN MN . C MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc5 A OE2 GLU 97 A GLU 97 1_555 H MN MN . C MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc6 A NE2 HIS 102 A HIS 102 1_555 E FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? 
metalc ? metalc7 B SD MET 7 B MET 7 1_555 G FE HEC . B HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc8 B NE2 HIS 67 B HIS 67 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc9 B NE2 HIS 71 B HIS 71 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc10 B NE2 HIS 102 B HIS 102 1_555 G FE HEC . B HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc11 F MN MN . B MN 201 1_555 D NE2 HIS 67 D HIS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc12 F MN MN . B MN 201 1_555 D NE2 HIS 71 D HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc13 F MN MN . B MN 201 1_555 D OE2 GLU 97 D GLU 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc14 C SD MET 7 C MET 7 1_555 I FE HEC . C HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc15 C NE2 HIS 67 C HIS 67 1_555 H MN MN . C MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc16 C NE2 HIS 71 C HIS 71 1_555 H MN MN . C MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc17 C NE2 HIS 102 C HIS 102 1_555 I FE HEC . C HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? 
metalc ? metalc18 D SD MET 7 D MET 7 1_555 J FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc19 D NE2 HIS 102 D HIS 102 1_555 J FE HEC . D HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6DY8 
_atom_sites.fract_transf_matrix[1][1]    0.013217 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00339 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026602 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013351 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEC A 1 201 1 HEC HEC . 
F 3 MN B 1 201 1 MN MN . 
G 2 HEC B 1 202 4 HEC HEC . 
H 3 MN C 1 201 2 MN MN . 
I 2 HEC C 1 202 2 HEC HEC . 
J 2 HEC D 1 201 3 HEC HEC . 
K 4 HOH A 1 301 158 HOH HOH . 
K 4 HOH A 2 302 159 HOH HOH . 
K 4 HOH A 3 303 71 HOH HOH . 
K 4 HOH A 4 304 193 HOH HOH . 
K 4 HOH A 5 305 60 HOH HOH . 
K 4 HOH A 6 306 75 HOH HOH . 
K 4 HOH A 7 307 96 HOH HOH . 
K 4 HOH A 8 308 50 HOH HOH . 
K 4 HOH A 9 309 174 HOH HOH . 
K 4 HOH A 10 310 27 HOH HOH . 
K 4 HOH A 11 311 6 HOH HOH . 
K 4 HOH A 12 312 83 HOH HOH . 
K 4 HOH A 13 313 56 HOH HOH . 
K 4 HOH A 14 314 74 HOH HOH . 
K 4 HOH A 15 315 129 HOH HOH . 
K 4 HOH A 16 316 105 HOH HOH . 
K 4 HOH A 17 317 8 HOH HOH . 
K 4 HOH A 18 318 37 HOH HOH . 
K 4 HOH A 19 319 125 HOH HOH . 
K 4 HOH A 20 320 64 HOH HOH . 
K 4 HOH A 21 321 31 HOH HOH . 
K 4 HOH A 22 322 69 HOH HOH . 
K 4 HOH A 23 323 89 HOH HOH . 
K 4 HOH A 24 324 49 HOH HOH . 
K 4 HOH A 25 325 18 HOH HOH . 
K 4 HOH A 26 326 47 HOH HOH . 
K 4 HOH A 27 327 167 HOH HOH . 
K 4 HOH A 28 328 21 HOH HOH . 
K 4 HOH A 29 329 17 HOH HOH . 
K 4 HOH A 30 330 181 HOH HOH . 
K 4 HOH A 31 331 10 HOH HOH . 
K 4 HOH A 32 332 14 HOH HOH . 
K 4 HOH A 33 333 117 HOH HOH . 
K 4 HOH A 34 334 110 HOH HOH . 
K 4 HOH A 35 335 150 HOH HOH . 
K 4 HOH A 36 336 67 HOH HOH . 
K 4 HOH A 37 337 148 HOH HOH . 
K 4 HOH A 38 338 172 HOH HOH . 
K 4 HOH A 39 339 16 HOH HOH . 
K 4 HOH A 40 340 11 HOH HOH . 
K 4 HOH A 41 341 70 HOH HOH . 
K 4 HOH A 42 342 85 HOH HOH . 
K 4 HOH A 43 343 101 HOH HOH . 
K 4 HOH A 44 344 120 HOH HOH . 
K 4 HOH A 45 345 22 HOH HOH . 
K 4 HOH A 46 346 121 HOH HOH . 
K 4 HOH A 47 347 78 HOH HOH . 
K 4 HOH A 48 348 131 HOH HOH . 
K 4 HOH A 49 349 81 HOH HOH . 
K 4 HOH A 50 350 145 HOH HOH . 
K 4 HOH A 51 351 3 HOH HOH . 
K 4 HOH A 52 352 153 HOH HOH . 
K 4 HOH A 53 353 73 HOH HOH . 
K 4 HOH A 54 354 62 HOH HOH . 
K 4 HOH A 55 355 80 HOH HOH . 
K 4 HOH A 56 356 2 HOH HOH . 
K 4 HOH A 57 357 12 HOH HOH . 
K 4 HOH A 58 358 98 HOH HOH . 
K 4 HOH A 59 359 116 HOH HOH . 
K 4 HOH A 60 360 104 HOH HOH . 
K 4 HOH A 61 361 39 HOH HOH . 
K 4 HOH A 62 362 7 HOH HOH . 
K 4 HOH A 63 363 32 HOH HOH . 
K 4 HOH A 64 364 122 HOH HOH . 
K 4 HOH A 65 365 20 HOH HOH . 
K 4 HOH A 66 366 127 HOH HOH . 
K 4 HOH A 67 367 45 HOH HOH . 
K 4 HOH A 68 368 163 HOH HOH . 
K 4 HOH A 69 369 25 HOH HOH . 
K 4 HOH A 70 370 95 HOH HOH . 
K 4 HOH A 71 371 123 HOH HOH . 
K 4 HOH A 72 372 183 HOH HOH . 
K 4 HOH A 73 373 156 HOH HOH . 
K 4 HOH A 74 374 112 HOH HOH . 
K 4 HOH A 75 375 190 HOH HOH . 
K 4 HOH A 76 376 36 HOH HOH . 
K 4 HOH A 77 377 46 HOH HOH . 
K 4 HOH A 78 378 68 HOH HOH . 
K 4 HOH A 79 379 179 HOH HOH . 
K 4 HOH A 80 380 147 HOH HOH . 
K 4 HOH A 81 381 109 HOH HOH . 
K 4 HOH A 82 382 126 HOH HOH . 
K 4 HOH A 83 383 57 HOH HOH . 
K 4 HOH A 84 384 138 HOH HOH . 
K 4 HOH A 85 385 111 HOH HOH . 
K 4 HOH A 86 386 93 HOH HOH . 
K 4 HOH A 87 387 152 HOH HOH . 
L 4 HOH B 1 301 72 HOH HOH . 
L 4 HOH B 2 302 187 HOH HOH . 
L 4 HOH B 3 303 34 HOH HOH . 
L 4 HOH B 4 304 103 HOH HOH . 
L 4 HOH B 5 305 173 HOH HOH . 
M 4 HOH C 1 301 33 HOH HOH . 
M 4 HOH C 2 302 63 HOH HOH . 
M 4 HOH C 3 303 1 HOH HOH . 
M 4 HOH C 4 304 92 HOH HOH . 
M 4 HOH C 5 305 91 HOH HOH . 
M 4 HOH C 6 306 119 HOH HOH . 
M 4 HOH C 7 307 146 HOH HOH . 
M 4 HOH C 8 308 99 HOH HOH . 
M 4 HOH C 9 309 97 HOH HOH . 
M 4 HOH C 10 310 102 HOH HOH . 
M 4 HOH C 11 311 171 HOH HOH . 
M 4 HOH C 12 312 28 HOH HOH . 
M 4 HOH C 13 313 132 HOH HOH . 
M 4 HOH C 14 314 94 HOH HOH . 
M 4 HOH C 15 315 40 HOH HOH . 
M 4 HOH C 16 316 5 HOH HOH . 
M 4 HOH C 17 317 106 HOH HOH . 
M 4 HOH C 18 318 191 HOH HOH . 
M 4 HOH C 19 319 52 HOH HOH . 
M 4 HOH C 20 320 15 HOH HOH . 
M 4 HOH C 21 321 151 HOH HOH . 
M 4 HOH C 22 322 30 HOH HOH . 
M 4 HOH C 23 323 13 HOH HOH . 
M 4 HOH C 24 324 186 HOH HOH . 
M 4 HOH C 25 325 41 HOH HOH . 
M 4 HOH C 26 326 23 HOH HOH . 
M 4 HOH C 27 327 82 HOH HOH . 
M 4 HOH C 28 328 42 HOH HOH . 
M 4 HOH C 29 329 54 HOH HOH . 
M 4 HOH C 30 330 61 HOH HOH . 
M 4 HOH C 31 331 9 HOH HOH . 
M 4 HOH C 32 332 79 HOH HOH . 
M 4 HOH C 33 333 84 HOH HOH . 
M 4 HOH C 34 334 136 HOH HOH . 
M 4 HOH C 35 335 4 HOH HOH . 
M 4 HOH C 36 336 55 HOH HOH . 
M 4 HOH C 37 337 90 HOH HOH . 
M 4 HOH C 38 338 107 HOH HOH . 
M 4 HOH C 39 339 100 HOH HOH . 
M 4 HOH C 40 340 194 HOH HOH . 
M 4 HOH C 41 341 162 HOH HOH . 
M 4 HOH C 42 342 155 HOH HOH . 
M 4 HOH C 43 343 189 HOH HOH . 
M 4 HOH C 44 344 164 HOH HOH . 
M 4 HOH C 45 345 77 HOH HOH . 
M 4 HOH C 46 346 65 HOH HOH . 
M 4 HOH C 47 347 53 HOH HOH . 
M 4 HOH C 48 348 149 HOH HOH . 
M 4 HOH C 49 349 166 HOH HOH . 
M 4 HOH C 50 350 142 HOH HOH . 
M 4 HOH C 51 351 180 HOH HOH . 
M 4 HOH C 52 352 130 HOH HOH . 
M 4 HOH C 53 353 182 HOH HOH . 
M 4 HOH C 54 354 157 HOH HOH . 
M 4 HOH C 55 355 195 HOH HOH . 
N 4 HOH D 1 301 135 HOH HOH . 
N 4 HOH D 2 302 24 HOH HOH . 
N 4 HOH D 3 303 48 HOH HOH . 
N 4 HOH D 4 304 114 HOH HOH . 
N 4 HOH D 5 305 196 HOH HOH . 
N 4 HOH D 6 306 170 HOH HOH . 
N 4 HOH D 7 307 178 HOH HOH . 
N 4 HOH D 8 308 176 HOH HOH . 
N 4 HOH D 9 309 175 HOH HOH . 
N 4 HOH D 10 310 185 HOH HOH . 
N 4 HOH D 11 311 29 HOH HOH . 
N 4 HOH D 12 312 44 HOH HOH . 
N 4 HOH D 13 313 38 HOH HOH . 
N 4 HOH D 14 314 134 HOH HOH . 
N 4 HOH D 15 315 66 HOH HOH . 
N 4 HOH D 16 316 124 HOH HOH . 
N 4 HOH D 17 317 118 HOH HOH . 
N 4 HOH D 18 318 87 HOH HOH . 
N 4 HOH D 19 319 108 HOH HOH . 
N 4 HOH D 20 320 141 HOH HOH . 
N 4 HOH D 21 321 133 HOH HOH . 
N 4 HOH D 22 322 58 HOH HOH . 
N 4 HOH D 23 323 19 HOH HOH . 
N 4 HOH D 24 324 160 HOH HOH . 
N 4 HOH D 25 325 113 HOH HOH . 
N 4 HOH D 26 326 59 HOH HOH . 
N 4 HOH D 27 327 188 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               8.824 
_atom_site.Cartn_y               22.268 
_atom_site.Cartn_z               32.9 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        39.48 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#