data_6DYA
#
_model_server_result.job_id            '_O1qCtu-EfEPXvp6w2TJ9A' 
_model_server_result.datetime_utc      '2025-01-12 19:00:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dya 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    6DYA 
#
_exptl.entry_id    6DYA 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              360.237 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(3,5-dichlorophenyl)methyl]-3-[(1H-imidazol-1-yl)methyl]benzamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6DYA 
_cell.length_a            81.909 
_cell.length_b            86.793 
_cell.length_c            41.985 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DYA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C18 H15 Cl2 N3 O' 
_chem_comp.formula_weight    360.237 
_chem_comp.id                HHM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(3,5-dichlorophenyl)methyl]-3-[(1H-imidazol-1-yl)methyl]benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N16 C15 HHM sing 138 n y 
N16 C17 HHM doub 139 n y 
C15 C14 HHM doub 140 n y 
C17 N13 HHM sing 141 n y 
C14 N13 HHM sing 142 n y 
N13 C12 HHM sing 143 n n 
C12 C03 HHM sing 144 n n 
C03 C02 HHM doub 145 n y 
C03 C04 HHM sing 146 n y 
C02 C01 HHM sing 147 n y 
C04 C05 HHM doub 148 n y 
C01 C06 HHM doub 149 n y 
C05 C06 HHM sing 150 n y 
C05 C07 HHM sing 151 n n 
CL1 C19 HHM sing 152 n n 
O09 C07 HHM doub 153 n n 
C07 N08 HHM sing 154 n n 
C19 C18 HHM doub 155 n y 
C19 C20 HHM sing 156 n y 
C18 C11 HHM sing 157 n y 
N08 C10 HHM sing 158 n n 
C20 C21 HHM doub 159 n y 
C11 C10 HHM sing 160 n n 
C11 C22 HHM doub 161 n y 
C21 C22 HHM sing 162 n y 
C21 CL2 HHM sing 163 n n 
C22 H1 HHM sing 164 n n 
C01 H2 HHM sing 165 n n 
C02 H3 HHM sing 166 n n 
C04 H4 HHM sing 167 n n 
C06 H5 HHM sing 168 n n 
N08 H6 HHM sing 169 n n 
C10 H7 HHM sing 170 n n 
C10 H8 HHM sing 171 n n 
C12 H9 HHM sing 172 n n 
C12 H10 HHM sing 173 n n 
C14 H11 HHM sing 174 n n 
C15 H12 HHM sing 175 n n 
C17 H13 HHM sing 176 n n 
C18 H14 HHM sing 177 n n 
C20 H15 HHM sing 178 n n 
#
_atom_sites.entry_id                     6DYA 
_atom_sites.fract_transf_matrix[1][1]    0.012209 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011522 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023818 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HHM A 1 401 401 HHM ROC . 
C 3 SO4 A 1 402 501 SO4 SO4 . 
D 4 DMS A 1 403 502 DMS DMS . 
E 4 DMS A 1 404 503 DMS DMS . 
F 5 HOH A 1 501 2 HOH HOH . 
F 5 HOH A 2 502 36 HOH HOH . 
F 5 HOH A 3 503 20 HOH HOH . 
F 5 HOH A 4 504 37 HOH HOH . 
F 5 HOH A 5 505 23 HOH HOH . 
F 5 HOH A 6 506 19 HOH HOH . 
F 5 HOH A 7 507 4 HOH HOH . 
F 5 HOH A 8 508 9 HOH HOH . 
F 5 HOH A 9 509 13 HOH HOH . 
F 5 HOH A 10 510 7 HOH HOH . 
F 5 HOH A 11 511 5 HOH HOH . 
F 5 HOH A 12 512 17 HOH HOH . 
F 5 HOH A 13 513 24 HOH HOH . 
F 5 HOH A 14 514 8 HOH HOH . 
F 5 HOH A 15 515 32 HOH HOH . 
F 5 HOH A 16 516 30 HOH HOH . 
F 5 HOH A 17 517 14 HOH HOH . 
F 5 HOH A 18 518 3 HOH HOH . 
F 5 HOH A 19 519 1 HOH HOH . 
F 5 HOH A 20 520 26 HOH HOH . 
F 5 HOH A 21 521 18 HOH HOH . 
F 5 HOH A 22 522 22 HOH HOH . 
F 5 HOH A 23 523 6 HOH HOH . 
F 5 HOH A 24 524 31 HOH HOH . 
F 5 HOH A 25 525 11 HOH HOH . 
F 5 HOH A 26 526 28 HOH HOH . 
F 5 HOH A 27 527 16 HOH HOH . 
F 5 HOH A 28 528 12 HOH HOH . 
F 5 HOH A 29 529 29 HOH HOH . 
F 5 HOH A 30 530 10 HOH HOH . 
F 5 HOH A 31 531 25 HOH HOH . 
F 5 HOH A 32 532 21 HOH HOH . 
F 5 HOH A 33 533 34 HOH HOH . 
F 5 HOH A 34 534 27 HOH HOH . 
F 5 HOH A 35 535 33 HOH HOH . 
F 5 HOH A 36 536 35 HOH HOH . 
F 5 HOH A 37 537 15 HOH HOH . 
F 5 HOH A 38 538 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C21 HHM . . . B 2 16.822 18.26 27.821 1 55.69 ? C21 HHM 401 A 1 
HETATM 2 C C11 HHM . . . B 2 14.589 18.871 26.551 1 53.96 ? C11 HHM 401 A 1 
HETATM 3 C C22 HHM . . . B 2 15.371 18.735 27.851 1 55.43 ? C22 HHM 401 A 1 
HETATM 4 C C01 HHM . . . B 2 9.678 16.637 22.5 1 42.99 ? C01 HHM 401 A 1 
HETATM 5 C C02 HHM . . . B 2 9.708 17.177 21.074 1 43.03 ? C02 HHM 401 A 1 
HETATM 6 C C03 HHM . . . B 2 10.498 18.44 20.744 1 42.75 ? C03 HHM 401 A 1 
HETATM 7 C C04 HHM . . . B 2 11.256 19.174 21.842 1 43.41 ? C04 HHM 401 A 1 
HETATM 8 C C05 HHM . . . B 2 11.227 18.628 23.266 1 44.76 ? C05 HHM 401 A 1 
HETATM 9 C C06 HHM . . . B 2 10.44 17.366 23.6 1 43.81 ? C06 HHM 401 A 1 
HETATM 10 C C07 HHM . . . B 2 11.995 19.352 24.363 1 46.71 ? C07 HHM 401 A 1 
HETATM 11 N N08 HHM . . . B 2 12.411 18.633 25.551 1 48.19 ? N08 HHM 401 A 1 
HETATM 12 O O09 HHM . . . B 2 12.253 20.499 24.239 1 47.52 ? O09 HHM 401 A 1 
HETATM 13 C C10 HHM . . . B 2 13.142 19.342 26.582 1 50.84 ? C10 HHM 401 A 1 
HETATM 14 C C12 HHM . . . B 2 10.519 18.976 19.315 1 43.48 ? C12 HHM 401 A 1 
HETATM 15 N N13 HHM . . . B 2 11.755 18.593 18.654 1 44.14 ? N13 HHM 401 A 1 
HETATM 16 C C14 HHM . . . B 2 12.784 19.376 18.422 1 42.88 ? C14 HHM 401 A 1 
HETATM 17 C C15 HHM . . . B 2 13.731 18.641 17.78 1 43.21 ? C15 HHM 401 A 1 
HETATM 18 N N16 HHM . . . B 2 13.27 17.423 17.629 1 43.48 1 N16 HHM 401 A 1 
HETATM 19 C C17 HHM . . . B 2 12.041 17.376 18.166 1 44.05 ? C17 HHM 401 A 1 
HETATM 20 C C18 HHM . . . B 2 15.247 18.534 25.219 1 54.93 ? C18 HHM 401 A 1 
HETATM 21 C C19 HHM . . . B 2 16.697 18.058 25.185 1 55.17 ? C19 HHM 401 A 1 
HETATM 22 C C20 HHM . . . B 2 17.487 17.921 26.487 1 55.73 ? C20 HHM 401 A 1 
HETATM 23 CL CL2 HHM . . . B 2 17.741 18.102 29.34 1 76.26 ? CL2 HHM 401 A 1 
HETATM 24 CL CL1 HHM . . . B 2 17.473 17.661 23.631 1 55.57 ? CL1 HHM 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           505 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#