data_6DYC # _model_server_result.job_id M7Liwyc0gk-tq6jy0evIyg _model_server_result.datetime_utc '2024-11-15 19:13:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dyc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6DYC # _exptl.entry_id 6DYC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.49 _cell.angle_gamma 90 _cell.entry_id 6DYC _cell.length_a 33.239 _cell.length_b 83.29 _cell.length_c 39.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DYC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 A SG CYS 98 A CYS 98 1_555 D CAB HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? covale ? covale2 A SG CYS 101 A CYS 101 1_555 D CAC HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? covale ? covale3 B SG CYS 98 B CYS 98 1_555 E CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? covale ? covale4 B SG CYS 101 B CYS 101 1_555 E CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc1 A SD MET 7 A MET 7 1_555 D FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 C CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc3 A NE2 HIS 71 A HIS 71 1_555 C CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc4 A NE2 HIS 97 A HIS 97 1_555 C CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc5 A NE2 HIS 102 A HIS 102 1_555 D FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc6 C CO CO . A CO 201 1_555 B NE2 HIS 67 B HIS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc7 C CO CO . A CO 201 1_555 B NE2 HIS 71 B HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc8 C CO CO . A CO 201 1_555 H O HOH . B HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc9 B OD1 ASP 2 B ASP 2 1_555 F CA CA . B CA 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc10 B OD2 ASP 2 B ASP 2 1_555 F CA CA . B CA 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc11 B SD MET 7 B MET 7 1_555 E FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc12 B NE2 HIS 102 B HIS 102 1_555 E FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DYC _atom_sites.fract_transf_matrix[1][1] 0.030085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00557 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 201 1 CO CO . D 3 HEC A 1 202 1 HEC HEC . E 3 HEC B 1 201 2 HEC HEC . F 4 CA B 1 202 1 CA CA . G 5 HOH A 1 301 261 HOH HOH . G 5 HOH A 2 302 198 HOH HOH . G 5 HOH A 3 303 145 HOH HOH . G 5 HOH A 4 304 182 HOH HOH . G 5 HOH A 5 305 180 HOH HOH . G 5 HOH A 6 306 171 HOH HOH . G 5 HOH A 7 307 195 HOH HOH . G 5 HOH A 8 308 147 HOH HOH . G 5 HOH A 9 309 47 HOH HOH . G 5 HOH A 10 310 112 HOH HOH . G 5 HOH A 11 311 102 HOH HOH . G 5 HOH A 12 312 104 HOH HOH . G 5 HOH A 13 313 187 HOH HOH . G 5 HOH A 14 314 243 HOH HOH . G 5 HOH A 15 315 98 HOH HOH . G 5 HOH A 16 316 52 HOH HOH . G 5 HOH A 17 317 88 HOH HOH . G 5 HOH A 18 318 11 HOH HOH . G 5 HOH A 19 319 67 HOH HOH . G 5 HOH A 20 320 136 HOH HOH . G 5 HOH A 21 321 143 HOH HOH . G 5 HOH A 22 322 123 HOH HOH . G 5 HOH A 23 323 51 HOH HOH . G 5 HOH A 24 324 19 HOH HOH . G 5 HOH A 25 325 119 HOH HOH . G 5 HOH A 26 326 177 HOH HOH . G 5 HOH A 27 327 259 HOH HOH . G 5 HOH A 28 328 73 HOH HOH . G 5 HOH A 29 329 109 HOH HOH . G 5 HOH A 30 330 196 HOH HOH . G 5 HOH A 31 331 69 HOH HOH . G 5 HOH A 32 332 264 HOH HOH . G 5 HOH A 33 333 56 HOH HOH . G 5 HOH A 34 334 118 HOH HOH . G 5 HOH A 35 335 45 HOH HOH . G 5 HOH A 36 336 247 HOH HOH . G 5 HOH A 37 337 151 HOH HOH . G 5 HOH A 38 338 6 HOH HOH . G 5 HOH A 39 339 59 HOH HOH . G 5 HOH A 40 340 36 HOH HOH . G 5 HOH A 41 341 218 HOH HOH . G 5 HOH A 42 342 158 HOH HOH . G 5 HOH A 43 343 40 HOH HOH . G 5 HOH A 44 344 46 HOH HOH . G 5 HOH A 45 345 16 HOH HOH . G 5 HOH A 46 346 58 HOH HOH . G 5 HOH A 47 347 172 HOH HOH . G 5 HOH A 48 348 35 HOH HOH . G 5 HOH A 49 349 20 HOH HOH . G 5 HOH A 50 350 9 HOH HOH . G 5 HOH A 51 351 28 HOH HOH . G 5 HOH A 52 352 33 HOH HOH . G 5 HOH A 53 353 160 HOH HOH . G 5 HOH A 54 354 134 HOH HOH . G 5 HOH A 55 355 199 HOH HOH . G 5 HOH A 56 356 260 HOH HOH . G 5 HOH A 57 357 75 HOH HOH . G 5 HOH A 58 358 23 HOH HOH . G 5 HOH A 59 359 234 HOH HOH . G 5 HOH A 60 360 42 HOH HOH . G 5 HOH A 61 361 55 HOH HOH . G 5 HOH A 62 362 27 HOH HOH . G 5 HOH A 63 363 18 HOH HOH . G 5 HOH A 64 364 229 HOH HOH . G 5 HOH A 65 365 201 HOH HOH . G 5 HOH A 66 366 190 HOH HOH . G 5 HOH A 67 367 121 HOH HOH . G 5 HOH A 68 368 162 HOH HOH . G 5 HOH A 69 369 166 HOH HOH . G 5 HOH A 70 370 7 HOH HOH . G 5 HOH A 71 371 17 HOH HOH . G 5 HOH A 72 372 86 HOH HOH . G 5 HOH A 73 373 200 HOH HOH . G 5 HOH A 74 374 106 HOH HOH . G 5 HOH A 75 375 252 HOH HOH . G 5 HOH A 76 376 41 HOH HOH . G 5 HOH A 77 377 32 HOH HOH . G 5 HOH A 78 378 37 HOH HOH . G 5 HOH A 79 379 4 HOH HOH . G 5 HOH A 80 380 144 HOH HOH . G 5 HOH A 81 381 63 HOH HOH . G 5 HOH A 82 382 83 HOH HOH . G 5 HOH A 83 383 223 HOH HOH . G 5 HOH A 84 384 159 HOH HOH . G 5 HOH A 85 385 185 HOH HOH . G 5 HOH A 86 386 90 HOH HOH . G 5 HOH A 87 387 152 HOH HOH . G 5 HOH A 88 388 228 HOH HOH . G 5 HOH A 89 389 146 HOH HOH . G 5 HOH A 90 390 215 HOH HOH . G 5 HOH A 91 391 163 HOH HOH . G 5 HOH A 92 392 79 HOH HOH . G 5 HOH A 93 393 221 HOH HOH . G 5 HOH A 94 394 150 HOH HOH . G 5 HOH A 95 395 89 HOH HOH . G 5 HOH A 96 396 21 HOH HOH . G 5 HOH A 97 397 137 HOH HOH . G 5 HOH A 98 398 207 HOH HOH . G 5 HOH A 99 399 242 HOH HOH . G 5 HOH A 100 400 179 HOH HOH . G 5 HOH A 101 401 64 HOH HOH . G 5 HOH A 102 402 156 HOH HOH . G 5 HOH A 103 403 222 HOH HOH . G 5 HOH A 104 404 103 HOH HOH . G 5 HOH A 105 405 124 HOH HOH . G 5 HOH A 106 406 66 HOH HOH . G 5 HOH A 107 407 49 HOH HOH . G 5 HOH A 108 408 188 HOH HOH . G 5 HOH A 109 409 140 HOH HOH . G 5 HOH A 110 410 244 HOH HOH . G 5 HOH A 111 411 113 HOH HOH . G 5 HOH A 112 412 127 HOH HOH . G 5 HOH A 113 413 70 HOH HOH . G 5 HOH A 114 414 128 HOH HOH . G 5 HOH A 115 415 108 HOH HOH . G 5 HOH A 116 416 170 HOH HOH . G 5 HOH A 117 417 24 HOH HOH . G 5 HOH A 118 418 181 HOH HOH . G 5 HOH A 119 419 255 HOH HOH . G 5 HOH A 120 420 135 HOH HOH . G 5 HOH A 121 421 92 HOH HOH . G 5 HOH A 122 422 80 HOH HOH . G 5 HOH A 123 423 248 HOH HOH . G 5 HOH A 124 424 142 HOH HOH . G 5 HOH A 125 425 214 HOH HOH . G 5 HOH A 126 426 227 HOH HOH . G 5 HOH A 127 427 116 HOH HOH . G 5 HOH A 128 428 132 HOH HOH . G 5 HOH A 129 429 176 HOH HOH . G 5 HOH A 130 430 220 HOH HOH . G 5 HOH A 131 431 82 HOH HOH . G 5 HOH A 132 432 71 HOH HOH . G 5 HOH A 133 433 100 HOH HOH . G 5 HOH A 134 434 94 HOH HOH . G 5 HOH A 135 435 241 HOH HOH . H 5 HOH B 1 301 226 HOH HOH . H 5 HOH B 2 302 114 HOH HOH . H 5 HOH B 3 303 174 HOH HOH . H 5 HOH B 4 304 111 HOH HOH . H 5 HOH B 5 305 164 HOH HOH . H 5 HOH B 6 306 25 HOH HOH . H 5 HOH B 7 307 211 HOH HOH . H 5 HOH B 8 308 133 HOH HOH . H 5 HOH B 9 309 62 HOH HOH . H 5 HOH B 10 310 3 HOH HOH . H 5 HOH B 11 311 107 HOH HOH . H 5 HOH B 12 312 192 HOH HOH . H 5 HOH B 13 313 15 HOH HOH . H 5 HOH B 14 314 96 HOH HOH . H 5 HOH B 15 315 122 HOH HOH . H 5 HOH B 16 316 129 HOH HOH . H 5 HOH B 17 317 184 HOH HOH . H 5 HOH B 18 318 148 HOH HOH . H 5 HOH B 19 319 233 HOH HOH . H 5 HOH B 20 320 97 HOH HOH . H 5 HOH B 21 321 251 HOH HOH . H 5 HOH B 22 322 120 HOH HOH . H 5 HOH B 23 323 224 HOH HOH . H 5 HOH B 24 324 258 HOH HOH . H 5 HOH B 25 325 10 HOH HOH . H 5 HOH B 26 326 13 HOH HOH . H 5 HOH B 27 327 54 HOH HOH . H 5 HOH B 28 328 44 HOH HOH . H 5 HOH B 29 329 39 HOH HOH . H 5 HOH B 30 330 256 HOH HOH . H 5 HOH B 31 331 22 HOH HOH . H 5 HOH B 32 332 117 HOH HOH . H 5 HOH B 33 333 8 HOH HOH . H 5 HOH B 34 334 93 HOH HOH . H 5 HOH B 35 335 157 HOH HOH . H 5 HOH B 36 336 110 HOH HOH . H 5 HOH B 37 337 43 HOH HOH . H 5 HOH B 38 338 115 HOH HOH . H 5 HOH B 39 339 68 HOH HOH . H 5 HOH B 40 340 253 HOH HOH . H 5 HOH B 41 341 99 HOH HOH . H 5 HOH B 42 342 60 HOH HOH . H 5 HOH B 43 343 72 HOH HOH . H 5 HOH B 44 344 38 HOH HOH . H 5 HOH B 45 345 257 HOH HOH . H 5 HOH B 46 346 14 HOH HOH . H 5 HOH B 47 347 12 HOH HOH . H 5 HOH B 48 348 262 HOH HOH . H 5 HOH B 49 349 101 HOH HOH . H 5 HOH B 50 350 131 HOH HOH . H 5 HOH B 51 351 48 HOH HOH . H 5 HOH B 52 352 1 HOH HOH . H 5 HOH B 53 353 236 HOH HOH . H 5 HOH B 54 354 5 HOH HOH . H 5 HOH B 55 355 191 HOH HOH . H 5 HOH B 56 356 167 HOH HOH . H 5 HOH B 57 357 161 HOH HOH . H 5 HOH B 58 358 61 HOH HOH . H 5 HOH B 59 359 217 HOH HOH . H 5 HOH B 60 360 85 HOH HOH . H 5 HOH B 61 361 53 HOH HOH . H 5 HOH B 62 362 263 HOH HOH . H 5 HOH B 63 363 213 HOH HOH . H 5 HOH B 64 364 30 HOH HOH . H 5 HOH B 65 365 2 HOH HOH . H 5 HOH B 66 366 186 HOH HOH . H 5 HOH B 67 367 202 HOH HOH . H 5 HOH B 68 368 212 HOH HOH . H 5 HOH B 69 369 210 HOH HOH . H 5 HOH B 70 370 232 HOH HOH . H 5 HOH B 71 371 65 HOH HOH . H 5 HOH B 72 372 105 HOH HOH . H 5 HOH B 73 373 168 HOH HOH . H 5 HOH B 74 374 76 HOH HOH . H 5 HOH B 75 375 231 HOH HOH . H 5 HOH B 76 376 205 HOH HOH . H 5 HOH B 77 377 29 HOH HOH . H 5 HOH B 78 378 237 HOH HOH . H 5 HOH B 79 379 165 HOH HOH . H 5 HOH B 80 380 154 HOH HOH . H 5 HOH B 81 381 126 HOH HOH . H 5 HOH B 82 382 34 HOH HOH . H 5 HOH B 83 383 173 HOH HOH . H 5 HOH B 84 384 87 HOH HOH . H 5 HOH B 85 385 81 HOH HOH . H 5 HOH B 86 386 78 HOH HOH . H 5 HOH B 87 387 153 HOH HOH . H 5 HOH B 88 388 209 HOH HOH . H 5 HOH B 89 389 31 HOH HOH . H 5 HOH B 90 390 141 HOH HOH . H 5 HOH B 91 391 194 HOH HOH . H 5 HOH B 92 392 26 HOH HOH . H 5 HOH B 93 393 230 HOH HOH . H 5 HOH B 94 394 193 HOH HOH . H 5 HOH B 95 395 84 HOH HOH . H 5 HOH B 96 396 57 HOH HOH . H 5 HOH B 97 397 225 HOH HOH . H 5 HOH B 98 398 138 HOH HOH . H 5 HOH B 99 399 239 HOH HOH . H 5 HOH B 100 400 178 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 27.073 _atom_site.Cartn_y -16.619 _atom_site.Cartn_z 46.843 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 709 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #