data_6DYE # _model_server_result.job_id ccVh4mLRBROcumGut45mfg _model_server_result.datetime_utc '2024-11-15 21:39:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6DYE # _exptl.entry_id 6DYE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.39 _cell.angle_gamma 90 _cell.entry_id 6DYE _cell.length_a 32.994 _cell.length_b 82.687 _cell.length_c 38.779 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A SG CYS 98 A CYS 98 1_555 D CAB HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale2 A SG CYS 101 A CYS 101 1_555 D CAC HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? covale ? covale3 B SG CYS 98 B CYS 98 1_555 F CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale4 B SG CYS 101 B CYS 101 1_555 F CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? metalc ? metalc1 A OE1 GLU 4 A GLU 4 1_555 E CA CA . A CA 203 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc2 A OE2 GLU 4 A GLU 4 1_555 E CA CA . A CA 203 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc3 A SD MET 7 A MET 7 1_555 D FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc4 A NE2 HIS 67 A HIS 67 1_555 C FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 A NE2 HIS 71 A HIS 71 1_555 C FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc6 A OD1 ASP 74 A ASP 74 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc7 A OD2 ASP 74 A ASP 74 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc8 A NE2 HIS 97 A HIS 97 1_555 C FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc9 A NE2 HIS 102 A HIS 102 1_555 D FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc10 C FE FE . A FE 201 1_555 G O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc11 C FE FE . A FE 201 1_555 B NE2 HIS 67 B HIS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc12 C FE FE . A FE 201 1_555 B NE2 HIS 71 B HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc13 B SD MET 7 B MET 7 1_555 F FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc14 B NE2 HIS 102 B HIS 102 1_555 F FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DYE _atom_sites.fract_transf_matrix[1][1] 0.030309 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005558 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 201 1 FE FE . D 3 HEC A 1 202 2 HEC HEC . E 4 CA A 1 203 1 CA CA . F 3 HEC B 1 201 1 HEC HEC . G 5 HOH A 1 301 22 HOH HOH . G 5 HOH A 2 302 17 HOH HOH . G 5 HOH A 3 303 92 HOH HOH . G 5 HOH A 4 304 74 HOH HOH . G 5 HOH A 5 305 29 HOH HOH . G 5 HOH A 6 306 30 HOH HOH . G 5 HOH A 7 307 39 HOH HOH . G 5 HOH A 8 308 90 HOH HOH . G 5 HOH A 9 309 62 HOH HOH . G 5 HOH A 10 310 8 HOH HOH . G 5 HOH A 11 311 58 HOH HOH . G 5 HOH A 12 312 21 HOH HOH . G 5 HOH A 13 313 69 HOH HOH . G 5 HOH A 14 314 45 HOH HOH . G 5 HOH A 15 315 9 HOH HOH . G 5 HOH A 16 316 20 HOH HOH . G 5 HOH A 17 317 53 HOH HOH . G 5 HOH A 18 318 56 HOH HOH . G 5 HOH A 19 319 67 HOH HOH . G 5 HOH A 20 320 60 HOH HOH . G 5 HOH A 21 321 5 HOH HOH . G 5 HOH A 22 322 35 HOH HOH . G 5 HOH A 23 323 36 HOH HOH . G 5 HOH A 24 324 18 HOH HOH . G 5 HOH A 25 325 120 HOH HOH . G 5 HOH A 26 326 1 HOH HOH . G 5 HOH A 27 327 12 HOH HOH . G 5 HOH A 28 328 113 HOH HOH . G 5 HOH A 29 329 43 HOH HOH . G 5 HOH A 30 330 117 HOH HOH . G 5 HOH A 31 331 91 HOH HOH . G 5 HOH A 32 332 75 HOH HOH . G 5 HOH A 33 333 63 HOH HOH . G 5 HOH A 34 334 3 HOH HOH . G 5 HOH A 35 335 111 HOH HOH . G 5 HOH A 36 336 52 HOH HOH . G 5 HOH A 37 337 54 HOH HOH . G 5 HOH A 38 338 57 HOH HOH . G 5 HOH A 39 339 115 HOH HOH . G 5 HOH A 40 340 44 HOH HOH . G 5 HOH A 41 341 10 HOH HOH . G 5 HOH A 42 342 47 HOH HOH . G 5 HOH A 43 343 14 HOH HOH . G 5 HOH A 44 344 76 HOH HOH . G 5 HOH A 45 345 15 HOH HOH . G 5 HOH A 46 346 41 HOH HOH . G 5 HOH A 47 347 26 HOH HOH . G 5 HOH A 48 348 42 HOH HOH . G 5 HOH A 49 349 116 HOH HOH . G 5 HOH A 50 350 84 HOH HOH . G 5 HOH A 51 351 107 HOH HOH . G 5 HOH A 52 352 118 HOH HOH . G 5 HOH A 53 353 97 HOH HOH . G 5 HOH A 54 354 109 HOH HOH . G 5 HOH A 55 355 106 HOH HOH . G 5 HOH A 56 356 72 HOH HOH . G 5 HOH A 57 357 23 HOH HOH . G 5 HOH A 58 358 98 HOH HOH . G 5 HOH A 59 359 86 HOH HOH . G 5 HOH A 60 360 59 HOH HOH . H 5 HOH B 1 301 11 HOH HOH . H 5 HOH B 2 302 85 HOH HOH . H 5 HOH B 3 303 27 HOH HOH . H 5 HOH B 4 304 33 HOH HOH . H 5 HOH B 5 305 51 HOH HOH . H 5 HOH B 6 306 82 HOH HOH . H 5 HOH B 7 307 7 HOH HOH . H 5 HOH B 8 308 31 HOH HOH . H 5 HOH B 9 309 24 HOH HOH . H 5 HOH B 10 310 2 HOH HOH . H 5 HOH B 11 311 37 HOH HOH . H 5 HOH B 12 312 13 HOH HOH . H 5 HOH B 13 313 6 HOH HOH . H 5 HOH B 14 314 101 HOH HOH . H 5 HOH B 15 315 4 HOH HOH . H 5 HOH B 16 316 114 HOH HOH . H 5 HOH B 17 317 25 HOH HOH . H 5 HOH B 18 318 50 HOH HOH . H 5 HOH B 19 319 119 HOH HOH . H 5 HOH B 20 320 93 HOH HOH . H 5 HOH B 21 321 110 HOH HOH . H 5 HOH B 22 322 46 HOH HOH . H 5 HOH B 23 323 49 HOH HOH . H 5 HOH B 24 324 19 HOH HOH . H 5 HOH B 25 325 94 HOH HOH . H 5 HOH B 26 326 48 HOH HOH . H 5 HOH B 27 327 112 HOH HOH . H 5 HOH B 28 328 104 HOH HOH . H 5 HOH B 29 329 40 HOH HOH . H 5 HOH B 30 330 34 HOH HOH . H 5 HOH B 31 331 103 HOH HOH . H 5 HOH B 32 332 64 HOH HOH . H 5 HOH B 33 333 108 HOH HOH . H 5 HOH B 34 334 102 HOH HOH . H 5 HOH B 35 335 68 HOH HOH . H 5 HOH B 36 336 61 HOH HOH . H 5 HOH B 37 337 78 HOH HOH . H 5 HOH B 38 338 70 HOH HOH . H 5 HOH B 39 339 66 HOH HOH . H 5 HOH B 40 340 96 HOH HOH . H 5 HOH B 41 341 65 HOH HOH . H 5 HOH B 42 342 38 HOH HOH . H 5 HOH B 43 343 71 HOH HOH . H 5 HOH B 44 344 77 HOH HOH . H 5 HOH B 45 345 89 HOH HOH . H 5 HOH B 46 346 87 HOH HOH . H 5 HOH B 47 347 55 HOH HOH . H 5 HOH B 48 348 28 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -17.552 _atom_site.Cartn_y 26.44 _atom_site.Cartn_z -7.873 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #