data_6DYG
#
_model_server_result.job_id            btJ-ni1ZJ75g94YlqYVY0A 
_model_server_result.datetime_utc      '2024-10-18 16:30:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dyg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    6DYG 
#
_exptl.entry_id    6DYG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              55.845 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE (III) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.99 
_cell.angle_gamma         90 
_cell.entry_id            6DYG 
_cell.length_a            34.739 
_cell.length_b            83.513 
_cell.length_c            39.088 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DYG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
covale ? covale1 A SG CYS 98 A CYS 98 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.724 ? 
covale ? covale2 A SG CYS 101 A CYS 101 1_555 C CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? 
covale ? covale3 B SG CYS 98 B CYS 98 1_555 E CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.754 ? 
covale ? covale4 B SG CYS 101 B CYS 101 1_555 E CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc1 A SD MET 7 A MET 7 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 D FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc3 A NE2 HIS 71 A HIS 71 1_555 D FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc4 A NE2 HIS 97 A HIS 97 1_555 D FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc5 A NE2 HIS 102 A HIS 102 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc6 D FE FE . A FE 202 1_555 G O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc7 D FE FE . A FE 202 1_555 B NE2 HIS 67 B HIS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc8 D FE FE . A FE 202 1_555 B NE2 HIS 71 B HIS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc9 B OE1 GLU 4 B GLU 4 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc10 B SD MET 7 B MET 7 1_555 E FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc11 B NE2 HIS 102 B HIS 102 1_555 E FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc12 E O1A HEC . B HEC 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
#
_chem_comp.formula           'Fe 3' 
_chem_comp.formula_weight    55.845 
_chem_comp.id                FE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE (III) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6DYG 
_atom_sites.fract_transf_matrix[1][1]    0.028786 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005072 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011974 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025977 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEC A 1 201 2 HEC HEC . 
D 3 FE A 1 202 1 FE FE . 
E 2 HEC B 1 201 2 HEC HEC . 
F 4 MG B 1 202 1 MG MG . 
G 5 HOH A 1 301 106 HOH HOH . 
G 5 HOH A 2 302 65 HOH HOH . 
G 5 HOH A 3 303 96 HOH HOH . 
G 5 HOH A 4 304 186 HOH HOH . 
G 5 HOH A 5 305 72 HOH HOH . 
G 5 HOH A 6 306 159 HOH HOH . 
G 5 HOH A 7 307 71 HOH HOH . 
G 5 HOH A 8 308 29 HOH HOH . 
G 5 HOH A 9 309 110 HOH HOH . 
G 5 HOH A 10 310 157 HOH HOH . 
G 5 HOH A 11 311 47 HOH HOH . 
G 5 HOH A 12 312 99 HOH HOH . 
G 5 HOH A 13 313 103 HOH HOH . 
G 5 HOH A 14 314 98 HOH HOH . 
G 5 HOH A 15 315 66 HOH HOH . 
G 5 HOH A 16 316 37 HOH HOH . 
G 5 HOH A 17 317 104 HOH HOH . 
G 5 HOH A 18 318 46 HOH HOH . 
G 5 HOH A 19 319 84 HOH HOH . 
G 5 HOH A 20 320 117 HOH HOH . 
G 5 HOH A 21 321 79 HOH HOH . 
G 5 HOH A 22 322 120 HOH HOH . 
G 5 HOH A 23 323 14 HOH HOH . 
G 5 HOH A 24 324 67 HOH HOH . 
G 5 HOH A 25 325 8 HOH HOH . 
G 5 HOH A 26 326 177 HOH HOH . 
G 5 HOH A 27 327 16 HOH HOH . 
G 5 HOH A 28 328 108 HOH HOH . 
G 5 HOH A 29 329 23 HOH HOH . 
G 5 HOH A 30 330 100 HOH HOH . 
G 5 HOH A 31 331 154 HOH HOH . 
G 5 HOH A 32 332 102 HOH HOH . 
G 5 HOH A 33 333 10 HOH HOH . 
G 5 HOH A 34 334 35 HOH HOH . 
G 5 HOH A 35 335 13 HOH HOH . 
G 5 HOH A 36 336 136 HOH HOH . 
G 5 HOH A 37 337 80 HOH HOH . 
G 5 HOH A 38 338 122 HOH HOH . 
G 5 HOH A 39 339 170 HOH HOH . 
G 5 HOH A 40 340 144 HOH HOH . 
G 5 HOH A 41 341 142 HOH HOH . 
G 5 HOH A 42 342 63 HOH HOH . 
G 5 HOH A 43 343 59 HOH HOH . 
G 5 HOH A 44 344 57 HOH HOH . 
G 5 HOH A 45 345 33 HOH HOH . 
G 5 HOH A 46 346 28 HOH HOH . 
G 5 HOH A 47 347 114 HOH HOH . 
G 5 HOH A 48 348 43 HOH HOH . 
G 5 HOH A 49 349 135 HOH HOH . 
G 5 HOH A 50 350 129 HOH HOH . 
G 5 HOH A 51 351 181 HOH HOH . 
G 5 HOH A 52 352 54 HOH HOH . 
G 5 HOH A 53 353 115 HOH HOH . 
G 5 HOH A 54 354 140 HOH HOH . 
G 5 HOH A 55 355 97 HOH HOH . 
G 5 HOH A 56 356 101 HOH HOH . 
G 5 HOH A 57 357 146 HOH HOH . 
G 5 HOH A 58 358 193 HOH HOH . 
G 5 HOH A 59 359 88 HOH HOH . 
G 5 HOH A 60 360 32 HOH HOH . 
G 5 HOH A 61 361 92 HOH HOH . 
G 5 HOH A 62 362 153 HOH HOH . 
G 5 HOH A 63 363 125 HOH HOH . 
G 5 HOH A 64 364 61 HOH HOH . 
G 5 HOH A 65 365 130 HOH HOH . 
G 5 HOH A 66 366 17 HOH HOH . 
G 5 HOH A 67 367 132 HOH HOH . 
G 5 HOH A 68 368 158 HOH HOH . 
G 5 HOH A 69 369 169 HOH HOH . 
G 5 HOH A 70 370 138 HOH HOH . 
G 5 HOH A 71 371 131 HOH HOH . 
G 5 HOH A 72 372 155 HOH HOH . 
G 5 HOH A 73 373 45 HOH HOH . 
G 5 HOH A 74 374 160 HOH HOH . 
G 5 HOH A 75 375 109 HOH HOH . 
G 5 HOH A 76 376 179 HOH HOH . 
G 5 HOH A 77 377 113 HOH HOH . 
G 5 HOH A 78 378 134 HOH HOH . 
G 5 HOH A 79 379 151 HOH HOH . 
G 5 HOH A 80 380 75 HOH HOH . 
G 5 HOH A 81 381 9 HOH HOH . 
G 5 HOH A 82 382 164 HOH HOH . 
G 5 HOH A 83 383 162 HOH HOH . 
G 5 HOH A 84 384 161 HOH HOH . 
G 5 HOH A 85 385 15 HOH HOH . 
G 5 HOH A 86 386 91 HOH HOH . 
G 5 HOH A 87 387 58 HOH HOH . 
G 5 HOH A 88 388 18 HOH HOH . 
G 5 HOH A 89 389 118 HOH HOH . 
H 5 HOH B 1 301 111 HOH HOH . 
H 5 HOH B 2 302 187 HOH HOH . 
H 5 HOH B 3 303 116 HOH HOH . 
H 5 HOH B 4 304 48 HOH HOH . 
H 5 HOH B 5 305 145 HOH HOH . 
H 5 HOH B 6 306 94 HOH HOH . 
H 5 HOH B 7 307 49 HOH HOH . 
H 5 HOH B 8 308 44 HOH HOH . 
H 5 HOH B 9 309 165 HOH HOH . 
H 5 HOH B 10 310 141 HOH HOH . 
H 5 HOH B 11 311 56 HOH HOH . 
H 5 HOH B 12 312 73 HOH HOH . 
H 5 HOH B 13 313 41 HOH HOH . 
H 5 HOH B 14 314 4 HOH HOH . 
H 5 HOH B 15 315 81 HOH HOH . 
H 5 HOH B 16 316 42 HOH HOH . 
H 5 HOH B 17 317 19 HOH HOH . 
H 5 HOH B 18 318 70 HOH HOH . 
H 5 HOH B 19 319 20 HOH HOH . 
H 5 HOH B 20 320 36 HOH HOH . 
H 5 HOH B 21 321 147 HOH HOH . 
H 5 HOH B 22 322 85 HOH HOH . 
H 5 HOH B 23 323 3 HOH HOH . 
H 5 HOH B 24 324 38 HOH HOH . 
H 5 HOH B 25 325 188 HOH HOH . 
H 5 HOH B 26 326 39 HOH HOH . 
H 5 HOH B 27 327 107 HOH HOH . 
H 5 HOH B 28 328 50 HOH HOH . 
H 5 HOH B 29 329 53 HOH HOH . 
H 5 HOH B 30 330 25 HOH HOH . 
H 5 HOH B 31 331 5 HOH HOH . 
H 5 HOH B 32 332 124 HOH HOH . 
H 5 HOH B 33 333 12 HOH HOH . 
H 5 HOH B 34 334 89 HOH HOH . 
H 5 HOH B 35 335 2 HOH HOH . 
H 5 HOH B 36 336 40 HOH HOH . 
H 5 HOH B 37 337 74 HOH HOH . 
H 5 HOH B 38 338 78 HOH HOH . 
H 5 HOH B 39 339 76 HOH HOH . 
H 5 HOH B 40 340 27 HOH HOH . 
H 5 HOH B 41 341 166 HOH HOH . 
H 5 HOH B 42 342 22 HOH HOH . 
H 5 HOH B 43 343 137 HOH HOH . 
H 5 HOH B 44 344 62 HOH HOH . 
H 5 HOH B 45 345 1 HOH HOH . 
H 5 HOH B 46 346 105 HOH HOH . 
H 5 HOH B 47 347 30 HOH HOH . 
H 5 HOH B 48 348 31 HOH HOH . 
H 5 HOH B 49 349 6 HOH HOH . 
H 5 HOH B 50 350 149 HOH HOH . 
H 5 HOH B 51 351 119 HOH HOH . 
H 5 HOH B 52 352 68 HOH HOH . 
H 5 HOH B 53 353 26 HOH HOH . 
H 5 HOH B 54 354 87 HOH HOH . 
H 5 HOH B 55 355 11 HOH HOH . 
H 5 HOH B 56 356 60 HOH HOH . 
H 5 HOH B 57 357 139 HOH HOH . 
H 5 HOH B 58 358 90 HOH HOH . 
H 5 HOH B 59 359 24 HOH HOH . 
H 5 HOH B 60 360 192 HOH HOH . 
H 5 HOH B 61 361 52 HOH HOH . 
H 5 HOH B 62 362 83 HOH HOH . 
H 5 HOH B 63 363 163 HOH HOH . 
H 5 HOH B 64 364 21 HOH HOH . 
H 5 HOH B 65 365 69 HOH HOH . 
H 5 HOH B 66 366 95 HOH HOH . 
H 5 HOH B 67 367 77 HOH HOH . 
H 5 HOH B 68 368 121 HOH HOH . 
H 5 HOH B 69 369 143 HOH HOH . 
H 5 HOH B 70 370 184 HOH HOH . 
H 5 HOH B 71 371 64 HOH HOH . 
H 5 HOH B 72 372 93 HOH HOH . 
H 5 HOH B 73 373 86 HOH HOH . 
H 5 HOH B 74 374 51 HOH HOH . 
H 5 HOH B 75 375 133 HOH HOH . 
H 5 HOH B 76 376 183 HOH HOH . 
H 5 HOH B 77 377 128 HOH HOH . 
H 5 HOH B 78 378 123 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           FE 
_atom_site.label_atom_id         FE 
_atom_site.label_comp_id         FE 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -12.729 
_atom_site.Cartn_y               -13.121 
_atom_site.Cartn_z               -10.951 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        28.43 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          FE 
_atom_site.auth_comp_id          FE 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           362 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#