data_6DYK # _model_server_result.job_id W7ivap_hEtuYMVsRMmCy4g _model_server_result.datetime_utc '2024-11-15 22:03:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dyk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 6DYK # _exptl.entry_id 6DYK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 30.006 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRIC OXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DYK _cell.length_a 48.919 _cell.length_b 98.69 _cell.length_c 178.99 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DYK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I 1 1 B,J 2 1 C,E,F,K 3 1 D,G,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 C SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 B SG CYS 96 C CYS 96 1_555 D SG CYS 96 G CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A NE2 HIS 67 A HIS 67 1_555 E FE FE . E FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc2 A NE2 HIS 71 A HIS 71 1_555 E FE FE . E FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc3 B NE2 HIS 67 C HIS 67 1_555 G FE FE . G FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc4 B NE2 HIS 71 C HIS 71 1_555 G FE FE . G FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc5 C NE2 HIS 67 E HIS 67 1_555 E FE FE . E FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc6 C NE2 HIS 71 E HIS 71 1_555 E FE FE . E FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc7 C NE2 HIS 97 E HIS 97 1_555 E FE FE . E FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc8 E FE FE . E FE 201 1_555 F N NO . E NO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc9 E FE FE . E FE 201 1_555 F O NO . E NO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc10 D NE2 HIS 67 G HIS 67 1_555 G FE FE . G FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc11 D NE2 HIS 71 G HIS 71 1_555 G FE FE . G FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc12 D NE2 HIS 97 G HIS 97 1_555 G FE FE . G FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc13 G FE FE . G FE 201 1_555 H N NO . G NO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? # _chem_comp.formula 'N O' _chem_comp.formula_weight 30.006 _chem_comp.id NO _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRIC OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Nitrogen monoxide' # _chem_comp_bond.atom_id_1 N _chem_comp_bond.atom_id_2 O _chem_comp_bond.comp_id NO _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 237 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 6DYK _atom_sites.fract_transf_matrix[1][1] 0.020442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005587 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FE E 1 201 2 FE FE . F 3 NO E 1 202 2 NO NO . G 2 FE G 1 201 1 FE FE . H 3 NO G 1 202 1 NO NO . I 4 HOH A 1 201 270 HOH HOH . I 4 HOH A 2 202 123 HOH HOH . I 4 HOH A 3 203 244 HOH HOH . I 4 HOH A 4 204 133 HOH HOH . I 4 HOH A 5 205 230 HOH HOH . I 4 HOH A 6 206 8 HOH HOH . I 4 HOH A 7 207 175 HOH HOH . I 4 HOH A 8 208 120 HOH HOH . I 4 HOH A 9 209 145 HOH HOH . I 4 HOH A 10 210 170 HOH HOH . I 4 HOH A 11 211 168 HOH HOH . I 4 HOH A 12 212 81 HOH HOH . I 4 HOH A 13 213 24 HOH HOH . I 4 HOH A 14 214 47 HOH HOH . I 4 HOH A 15 215 58 HOH HOH . I 4 HOH A 16 216 200 HOH HOH . I 4 HOH A 17 217 39 HOH HOH . I 4 HOH A 18 218 15 HOH HOH . I 4 HOH A 19 219 92 HOH HOH . I 4 HOH A 20 220 132 HOH HOH . I 4 HOH A 21 221 258 HOH HOH . I 4 HOH A 22 222 134 HOH HOH . I 4 HOH A 23 223 206 HOH HOH . I 4 HOH A 24 224 130 HOH HOH . I 4 HOH A 25 225 19 HOH HOH . I 4 HOH A 26 226 229 HOH HOH . I 4 HOH A 27 227 253 HOH HOH . I 4 HOH A 28 228 153 HOH HOH . I 4 HOH A 29 229 185 HOH HOH . I 4 HOH A 30 230 216 HOH HOH . I 4 HOH A 31 231 112 HOH HOH . I 4 HOH A 32 232 219 HOH HOH . I 4 HOH A 33 233 242 HOH HOH . I 4 HOH A 34 234 188 HOH HOH . I 4 HOH A 35 235 139 HOH HOH . I 4 HOH A 36 236 127 HOH HOH . I 4 HOH A 37 237 26 HOH HOH . I 4 HOH A 38 238 245 HOH HOH . I 4 HOH A 39 239 21 HOH HOH . I 4 HOH A 40 240 29 HOH HOH . I 4 HOH A 41 241 155 HOH HOH . I 4 HOH A 42 242 161 HOH HOH . I 4 HOH A 43 243 265 HOH HOH . I 4 HOH A 44 244 201 HOH HOH . I 4 HOH A 45 245 182 HOH HOH . I 4 HOH A 46 246 275 HOH HOH . I 4 HOH A 47 247 165 HOH HOH . I 4 HOH A 48 248 214 HOH HOH . I 4 HOH A 49 249 57 HOH HOH . I 4 HOH A 50 250 86 HOH HOH . I 4 HOH A 51 251 109 HOH HOH . I 4 HOH A 52 252 252 HOH HOH . I 4 HOH A 53 253 227 HOH HOH . I 4 HOH A 54 254 223 HOH HOH . I 4 HOH A 55 255 178 HOH HOH . I 4 HOH A 56 256 239 HOH HOH . I 4 HOH A 57 257 231 HOH HOH . I 4 HOH A 58 258 143 HOH HOH . J 4 HOH C 1 201 146 HOH HOH . J 4 HOH C 2 202 166 HOH HOH . J 4 HOH C 3 203 183 HOH HOH . J 4 HOH C 4 204 220 HOH HOH . J 4 HOH C 5 205 98 HOH HOH . J 4 HOH C 6 206 52 HOH HOH . J 4 HOH C 7 207 66 HOH HOH . J 4 HOH C 8 208 76 HOH HOH . J 4 HOH C 9 209 28 HOH HOH . J 4 HOH C 10 210 59 HOH HOH . J 4 HOH C 11 211 64 HOH HOH . J 4 HOH C 12 212 72 HOH HOH . J 4 HOH C 13 213 224 HOH HOH . J 4 HOH C 14 214 164 HOH HOH . J 4 HOH C 15 215 197 HOH HOH . J 4 HOH C 16 216 196 HOH HOH . J 4 HOH C 17 217 104 HOH HOH . J 4 HOH C 18 218 4 HOH HOH . J 4 HOH C 19 219 95 HOH HOH . J 4 HOH C 20 220 122 HOH HOH . J 4 HOH C 21 221 100 HOH HOH . J 4 HOH C 22 222 117 HOH HOH . J 4 HOH C 23 223 247 HOH HOH . J 4 HOH C 24 224 25 HOH HOH . J 4 HOH C 25 225 121 HOH HOH . J 4 HOH C 26 226 44 HOH HOH . J 4 HOH C 27 227 263 HOH HOH . J 4 HOH C 28 228 126 HOH HOH . J 4 HOH C 29 229 7 HOH HOH . J 4 HOH C 30 230 50 HOH HOH . J 4 HOH C 31 231 23 HOH HOH . J 4 HOH C 32 232 97 HOH HOH . J 4 HOH C 33 233 157 HOH HOH . J 4 HOH C 34 234 77 HOH HOH . J 4 HOH C 35 235 140 HOH HOH . J 4 HOH C 36 236 259 HOH HOH . J 4 HOH C 37 237 41 HOH HOH . J 4 HOH C 38 238 42 HOH HOH . J 4 HOH C 39 239 71 HOH HOH . J 4 HOH C 40 240 68 HOH HOH . J 4 HOH C 41 241 34 HOH HOH . J 4 HOH C 42 242 189 HOH HOH . J 4 HOH C 43 243 56 HOH HOH . J 4 HOH C 44 244 180 HOH HOH . J 4 HOH C 45 245 210 HOH HOH . J 4 HOH C 46 246 9 HOH HOH . J 4 HOH C 47 247 85 HOH HOH . J 4 HOH C 48 248 144 HOH HOH . J 4 HOH C 49 249 131 HOH HOH . J 4 HOH C 50 250 78 HOH HOH . J 4 HOH C 51 251 82 HOH HOH . J 4 HOH C 52 252 101 HOH HOH . J 4 HOH C 53 253 69 HOH HOH . J 4 HOH C 54 254 113 HOH HOH . J 4 HOH C 55 255 225 HOH HOH . J 4 HOH C 56 256 264 HOH HOH . J 4 HOH C 57 257 45 HOH HOH . J 4 HOH C 58 258 148 HOH HOH . J 4 HOH C 59 259 63 HOH HOH . J 4 HOH C 60 260 73 HOH HOH . J 4 HOH C 61 261 75 HOH HOH . J 4 HOH C 62 262 190 HOH HOH . J 4 HOH C 63 263 142 HOH HOH . J 4 HOH C 64 264 96 HOH HOH . J 4 HOH C 65 265 174 HOH HOH . J 4 HOH C 66 266 218 HOH HOH . J 4 HOH C 67 267 10 HOH HOH . J 4 HOH C 68 268 171 HOH HOH . J 4 HOH C 69 269 215 HOH HOH . J 4 HOH C 70 270 257 HOH HOH . K 4 HOH E 1 301 234 HOH HOH . K 4 HOH E 2 302 61 HOH HOH . K 4 HOH E 3 303 93 HOH HOH . K 4 HOH E 4 304 115 HOH HOH . K 4 HOH E 5 305 163 HOH HOH . K 4 HOH E 6 306 14 HOH HOH . K 4 HOH E 7 307 271 HOH HOH . K 4 HOH E 8 308 30 HOH HOH . K 4 HOH E 9 309 119 HOH HOH . K 4 HOH E 10 310 151 HOH HOH . K 4 HOH E 11 311 18 HOH HOH . K 4 HOH E 12 312 31 HOH HOH . K 4 HOH E 13 313 110 HOH HOH . K 4 HOH E 14 314 11 HOH HOH . K 4 HOH E 15 315 89 HOH HOH . K 4 HOH E 16 316 160 HOH HOH . K 4 HOH E 17 317 103 HOH HOH . K 4 HOH E 18 318 213 HOH HOH . K 4 HOH E 19 319 33 HOH HOH . K 4 HOH E 20 320 169 HOH HOH . K 4 HOH E 21 321 22 HOH HOH . K 4 HOH E 22 322 158 HOH HOH . K 4 HOH E 23 323 226 HOH HOH . K 4 HOH E 24 324 54 HOH HOH . K 4 HOH E 25 325 36 HOH HOH . K 4 HOH E 26 326 91 HOH HOH . K 4 HOH E 27 327 240 HOH HOH . K 4 HOH E 28 328 198 HOH HOH . K 4 HOH E 29 329 207 HOH HOH . K 4 HOH E 30 330 106 HOH HOH . K 4 HOH E 31 331 37 HOH HOH . K 4 HOH E 32 332 129 HOH HOH . K 4 HOH E 33 333 249 HOH HOH . K 4 HOH E 34 334 65 HOH HOH . K 4 HOH E 35 335 195 HOH HOH . K 4 HOH E 36 336 260 HOH HOH . K 4 HOH E 37 337 74 HOH HOH . K 4 HOH E 38 338 105 HOH HOH . K 4 HOH E 39 339 186 HOH HOH . K 4 HOH E 40 340 43 HOH HOH . K 4 HOH E 41 341 192 HOH HOH . K 4 HOH E 42 342 67 HOH HOH . K 4 HOH E 43 343 251 HOH HOH . L 4 HOH G 1 301 268 HOH HOH . L 4 HOH G 2 302 147 HOH HOH . L 4 HOH G 3 303 99 HOH HOH . L 4 HOH G 4 304 70 HOH HOH . L 4 HOH G 5 305 173 HOH HOH . L 4 HOH G 6 306 62 HOH HOH . L 4 HOH G 7 307 20 HOH HOH . L 4 HOH G 8 308 203 HOH HOH . L 4 HOH G 9 309 124 HOH HOH . L 4 HOH G 10 310 48 HOH HOH . L 4 HOH G 11 311 108 HOH HOH . L 4 HOH G 12 312 40 HOH HOH . L 4 HOH G 13 313 128 HOH HOH . L 4 HOH G 14 314 80 HOH HOH . L 4 HOH G 15 315 111 HOH HOH . L 4 HOH G 16 316 55 HOH HOH . L 4 HOH G 17 317 13 HOH HOH . L 4 HOH G 18 318 236 HOH HOH . L 4 HOH G 19 319 53 HOH HOH . L 4 HOH G 20 320 156 HOH HOH . L 4 HOH G 21 321 211 HOH HOH . L 4 HOH G 22 322 150 HOH HOH . L 4 HOH G 23 323 6 HOH HOH . L 4 HOH G 24 324 94 HOH HOH . L 4 HOH G 25 325 3 HOH HOH . L 4 HOH G 26 326 2 HOH HOH . L 4 HOH G 27 327 49 HOH HOH . L 4 HOH G 28 328 116 HOH HOH . L 4 HOH G 29 329 136 HOH HOH . L 4 HOH G 30 330 35 HOH HOH . L 4 HOH G 31 331 32 HOH HOH . L 4 HOH G 32 332 84 HOH HOH . L 4 HOH G 33 333 184 HOH HOH . L 4 HOH G 34 334 102 HOH HOH . L 4 HOH G 35 335 51 HOH HOH . L 4 HOH G 36 336 272 HOH HOH . L 4 HOH G 37 337 27 HOH HOH . L 4 HOH G 38 338 152 HOH HOH . L 4 HOH G 39 339 38 HOH HOH . L 4 HOH G 40 340 16 HOH HOH . L 4 HOH G 41 341 269 HOH HOH . L 4 HOH G 42 342 187 HOH HOH . L 4 HOH G 43 343 154 HOH HOH . L 4 HOH G 44 344 90 HOH HOH . L 4 HOH G 45 345 199 HOH HOH . L 4 HOH G 46 346 137 HOH HOH . L 4 HOH G 47 347 162 HOH HOH . L 4 HOH G 48 348 177 HOH HOH . L 4 HOH G 49 349 141 HOH HOH . L 4 HOH G 50 350 181 HOH HOH . L 4 HOH G 51 351 12 HOH HOH . L 4 HOH G 52 352 17 HOH HOH . L 4 HOH G 53 353 274 HOH HOH . L 4 HOH G 54 354 205 HOH HOH . L 4 HOH G 55 355 191 HOH HOH . L 4 HOH G 56 356 193 HOH HOH . L 4 HOH G 57 357 167 HOH HOH . L 4 HOH G 58 358 138 HOH HOH . L 4 HOH G 59 359 209 HOH HOH . L 4 HOH G 60 360 46 HOH HOH . L 4 HOH G 61 361 233 HOH HOH . L 4 HOH G 62 362 83 HOH HOH . L 4 HOH G 63 363 79 HOH HOH . L 4 HOH G 64 364 159 HOH HOH . L 4 HOH G 65 365 261 HOH HOH . L 4 HOH G 66 366 212 HOH HOH . L 4 HOH G 67 367 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO . . . F 3 1.608 -19.215 37.924 1 28.5 ? N NO 202 E 1 HETATM 2 O O NO . . . F 3 2.704 -18.79 38.764 1 26.72 ? O NO 202 E 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 2 #