data_6DYM # _model_server_result.job_id FsT1MDrGGXnosI-LPbsTWg _model_server_result.datetime_utc '2024-11-29 17:19:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 6DYM # _exptl.entry_id 6DYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.32 _cell.angle_gamma 90 _cell.entry_id 6DYM _cell.length_a 44.958 _cell.length_b 56.486 _cell.length_c 50.523 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id CA _struct_conn.ptnr1_label_comp_id CA _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CA _struct_conn.ptnr1_auth_seq_id 901 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id O _struct_conn.ptnr2_label_comp_id HOH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HOH _struct_conn.ptnr2_auth_seq_id 1067 _struct_conn.ptnr2_symmetry 2_545 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 3.036 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DYM _atom_sites.fract_transf_matrix[1][1] 0.022243 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009589 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021554 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 901 1 CA CA . C 3 HOH A 1 1001 98 HOH HOH . C 3 HOH A 2 1002 125 HOH HOH . C 3 HOH A 3 1003 77 HOH HOH . C 3 HOH A 4 1004 56 HOH HOH . C 3 HOH A 5 1005 15 HOH HOH . C 3 HOH A 6 1006 27 HOH HOH . C 3 HOH A 7 1007 61 HOH HOH . C 3 HOH A 8 1008 54 HOH HOH . C 3 HOH A 9 1009 47 HOH HOH . C 3 HOH A 10 1010 11 HOH HOH . C 3 HOH A 11 1011 95 HOH HOH . C 3 HOH A 12 1012 17 HOH HOH . C 3 HOH A 13 1013 89 HOH HOH . C 3 HOH A 14 1014 30 HOH HOH . C 3 HOH A 15 1015 94 HOH HOH . C 3 HOH A 16 1016 14 HOH HOH . C 3 HOH A 17 1017 120 HOH HOH . C 3 HOH A 18 1018 91 HOH HOH . C 3 HOH A 19 1019 101 HOH HOH . C 3 HOH A 20 1020 9 HOH HOH . C 3 HOH A 21 1021 82 HOH HOH . C 3 HOH A 22 1022 33 HOH HOH . C 3 HOH A 23 1023 97 HOH HOH . C 3 HOH A 24 1024 43 HOH HOH . C 3 HOH A 25 1025 74 HOH HOH . C 3 HOH A 26 1026 28 HOH HOH . C 3 HOH A 27 1027 69 HOH HOH . C 3 HOH A 28 1028 110 HOH HOH . C 3 HOH A 29 1029 31 HOH HOH . C 3 HOH A 30 1030 38 HOH HOH . C 3 HOH A 31 1031 68 HOH HOH . C 3 HOH A 32 1032 5 HOH HOH . C 3 HOH A 33 1033 1 HOH HOH . C 3 HOH A 34 1034 3 HOH HOH . C 3 HOH A 35 1035 72 HOH HOH . C 3 HOH A 36 1036 41 HOH HOH . C 3 HOH A 37 1037 60 HOH HOH . C 3 HOH A 38 1038 79 HOH HOH . C 3 HOH A 39 1039 4 HOH HOH . C 3 HOH A 40 1040 100 HOH HOH . C 3 HOH A 41 1041 6 HOH HOH . C 3 HOH A 42 1042 24 HOH HOH . C 3 HOH A 43 1043 40 HOH HOH . C 3 HOH A 44 1044 2 HOH HOH . C 3 HOH A 45 1045 22 HOH HOH . C 3 HOH A 46 1046 83 HOH HOH . C 3 HOH A 47 1047 114 HOH HOH . C 3 HOH A 48 1048 118 HOH HOH . C 3 HOH A 49 1049 18 HOH HOH . C 3 HOH A 50 1050 7 HOH HOH . C 3 HOH A 51 1051 103 HOH HOH . C 3 HOH A 52 1052 8 HOH HOH . C 3 HOH A 53 1053 55 HOH HOH . C 3 HOH A 54 1054 65 HOH HOH . C 3 HOH A 55 1055 109 HOH HOH . C 3 HOH A 56 1056 13 HOH HOH . C 3 HOH A 57 1057 73 HOH HOH . C 3 HOH A 58 1058 21 HOH HOH . C 3 HOH A 59 1059 132 HOH HOH . C 3 HOH A 60 1060 46 HOH HOH . C 3 HOH A 61 1061 113 HOH HOH . C 3 HOH A 62 1062 87 HOH HOH . C 3 HOH A 63 1063 86 HOH HOH . C 3 HOH A 64 1064 19 HOH HOH . C 3 HOH A 65 1065 26 HOH HOH . C 3 HOH A 66 1066 70 HOH HOH . C 3 HOH A 67 1067 76 HOH HOH . C 3 HOH A 68 1068 12 HOH HOH . C 3 HOH A 69 1069 37 HOH HOH . C 3 HOH A 70 1070 35 HOH HOH . C 3 HOH A 71 1071 48 HOH HOH . C 3 HOH A 72 1072 53 HOH HOH . C 3 HOH A 73 1073 44 HOH HOH . C 3 HOH A 74 1074 23 HOH HOH . C 3 HOH A 75 1075 36 HOH HOH . C 3 HOH A 76 1076 90 HOH HOH . C 3 HOH A 77 1077 84 HOH HOH . C 3 HOH A 78 1078 50 HOH HOH . C 3 HOH A 79 1079 45 HOH HOH . C 3 HOH A 80 1080 20 HOH HOH . C 3 HOH A 81 1081 25 HOH HOH . C 3 HOH A 82 1082 58 HOH HOH . C 3 HOH A 83 1083 66 HOH HOH . C 3 HOH A 84 1084 64 HOH HOH . C 3 HOH A 85 1085 10 HOH HOH . C 3 HOH A 86 1086 39 HOH HOH . C 3 HOH A 87 1087 16 HOH HOH . C 3 HOH A 88 1088 107 HOH HOH . C 3 HOH A 89 1089 121 HOH HOH . C 3 HOH A 90 1090 78 HOH HOH . C 3 HOH A 91 1091 59 HOH HOH . C 3 HOH A 92 1092 29 HOH HOH . C 3 HOH A 93 1093 63 HOH HOH . C 3 HOH A 94 1094 127 HOH HOH . C 3 HOH A 95 1095 128 HOH HOH . C 3 HOH A 96 1096 49 HOH HOH . C 3 HOH A 97 1097 71 HOH HOH . C 3 HOH A 98 1098 99 HOH HOH . C 3 HOH A 99 1099 75 HOH HOH . C 3 HOH A 100 1100 126 HOH HOH . C 3 HOH A 101 1101 104 HOH HOH . C 3 HOH A 102 1102 57 HOH HOH . C 3 HOH A 103 1103 34 HOH HOH . C 3 HOH A 104 1104 51 HOH HOH . C 3 HOH A 105 1105 102 HOH HOH . C 3 HOH A 106 1106 32 HOH HOH . C 3 HOH A 107 1107 112 HOH HOH . C 3 HOH A 108 1108 106 HOH HOH . C 3 HOH A 109 1109 92 HOH HOH . C 3 HOH A 110 1110 52 HOH HOH . C 3 HOH A 111 1111 108 HOH HOH . C 3 HOH A 112 1112 111 HOH HOH . C 3 HOH A 113 1113 62 HOH HOH . C 3 HOH A 114 1114 67 HOH HOH . C 3 HOH A 115 1115 123 HOH HOH . C 3 HOH A 116 1116 116 HOH HOH . C 3 HOH A 117 1117 81 HOH HOH . C 3 HOH A 118 1118 105 HOH HOH . C 3 HOH A 119 1119 42 HOH HOH . C 3 HOH A 120 1120 88 HOH HOH . C 3 HOH A 121 1121 115 HOH HOH . C 3 HOH A 122 1122 93 HOH HOH . C 3 HOH A 123 1123 117 HOH HOH . C 3 HOH A 124 1124 80 HOH HOH . C 3 HOH A 125 1125 85 HOH HOH . C 3 HOH A 126 1126 96 HOH HOH . C 3 HOH A 127 1127 129 HOH HOH . C 3 HOH A 128 1128 119 HOH HOH . C 3 HOH A 129 1129 122 HOH HOH . C 3 HOH A 130 1130 130 HOH HOH . C 3 HOH A 131 1131 124 HOH HOH . C 3 HOH A 132 1132 131 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 0.448 _atom_site.Cartn_y -27.099 _atom_site.Cartn_z -9.872 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 901 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #