data_6DYN # _model_server_result.job_id jmKqbuTV8GELwsobF-af5g _model_server_result.datetime_utc '2024-11-29 17:01:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dyn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 6DYN # _exptl.entry_id 6DYN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 111.145 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HISTAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.23 _cell.angle_gamma 90 _cell.entry_id 6DYN _cell.length_a 44.58 _cell.length_b 57.47 _cell.length_c 50.13 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 161 A THR 825 1_555 C CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.188 ? metalc ? metalc2 A OD1 ASN 163 A ASN 827 1_555 C CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc3 C CA CA . A CA 902 1_555 D O HOH . A HOH 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.162 ? metalc ? metalc4 C CA CA . A CA 902 1_555 D O HOH . A HOH 1094 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? # _chem_comp.formula 'C5 H9 N3' _chem_comp.formula_weight 111.145 _chem_comp.id HSM _chem_comp.mon_nstd_flag . _chem_comp.name HISTAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA HSM sing 152 n n N H1 HSM sing 153 n n N H2 HSM sing 154 n n CA CB HSM sing 155 n n CA HA1 HSM sing 156 n n CA HA2 HSM sing 157 n n CB CG HSM sing 158 n n CB HB1 HSM sing 159 n n CB HB2 HSM sing 160 n n CG ND1 HSM sing 161 n y CG CD2 HSM doub 162 n y ND1 CE1 HSM doub 163 n y CD2 NE2 HSM sing 164 n y CD2 HD2 HSM sing 165 n n CE1 NE2 HSM sing 166 n y CE1 HE1 HSM sing 167 n n NE2 HE2 HSM sing 168 n n # _atom_sites.entry_id 6DYN _atom_sites.fract_transf_matrix[1][1] 0.022432 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009628 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HSM A 1 901 1 HSM HSM . C 3 CA A 1 902 1 CA CA . D 4 HOH A 1 1001 117 HOH HOH . D 4 HOH A 2 1002 21 HOH HOH . D 4 HOH A 3 1003 63 HOH HOH . D 4 HOH A 4 1004 40 HOH HOH . D 4 HOH A 5 1005 31 HOH HOH . D 4 HOH A 6 1006 28 HOH HOH . D 4 HOH A 7 1007 72 HOH HOH . D 4 HOH A 8 1008 44 HOH HOH . D 4 HOH A 9 1009 29 HOH HOH . D 4 HOH A 10 1010 144 HOH HOH . D 4 HOH A 11 1011 32 HOH HOH . D 4 HOH A 12 1012 85 HOH HOH . D 4 HOH A 13 1013 18 HOH HOH . D 4 HOH A 14 1014 67 HOH HOH . D 4 HOH A 15 1015 99 HOH HOH . D 4 HOH A 16 1016 45 HOH HOH . D 4 HOH A 17 1017 116 HOH HOH . D 4 HOH A 18 1018 75 HOH HOH . D 4 HOH A 19 1019 150 HOH HOH . D 4 HOH A 20 1020 17 HOH HOH . D 4 HOH A 21 1021 127 HOH HOH . D 4 HOH A 22 1022 143 HOH HOH . D 4 HOH A 23 1023 65 HOH HOH . D 4 HOH A 24 1024 55 HOH HOH . D 4 HOH A 25 1025 107 HOH HOH . D 4 HOH A 26 1026 120 HOH HOH . D 4 HOH A 27 1027 8 HOH HOH . D 4 HOH A 28 1028 171 HOH HOH . D 4 HOH A 29 1029 30 HOH HOH . D 4 HOH A 30 1030 106 HOH HOH . D 4 HOH A 31 1031 49 HOH HOH . D 4 HOH A 32 1032 9 HOH HOH . D 4 HOH A 33 1033 10 HOH HOH . D 4 HOH A 34 1034 57 HOH HOH . D 4 HOH A 35 1035 103 HOH HOH . D 4 HOH A 36 1036 6 HOH HOH . D 4 HOH A 37 1037 100 HOH HOH . D 4 HOH A 38 1038 60 HOH HOH . D 4 HOH A 39 1039 68 HOH HOH . D 4 HOH A 40 1040 78 HOH HOH . D 4 HOH A 41 1041 70 HOH HOH . D 4 HOH A 42 1042 128 HOH HOH . D 4 HOH A 43 1043 124 HOH HOH . D 4 HOH A 44 1044 104 HOH HOH . D 4 HOH A 45 1045 98 HOH HOH . D 4 HOH A 46 1046 50 HOH HOH . D 4 HOH A 47 1047 4 HOH HOH . D 4 HOH A 48 1048 5 HOH HOH . D 4 HOH A 49 1049 12 HOH HOH . D 4 HOH A 50 1050 2 HOH HOH . D 4 HOH A 51 1051 61 HOH HOH . D 4 HOH A 52 1052 80 HOH HOH . D 4 HOH A 53 1053 48 HOH HOH . D 4 HOH A 54 1054 56 HOH HOH . D 4 HOH A 55 1055 46 HOH HOH . D 4 HOH A 56 1056 20 HOH HOH . D 4 HOH A 57 1057 1 HOH HOH . D 4 HOH A 58 1058 27 HOH HOH . D 4 HOH A 59 1059 23 HOH HOH . D 4 HOH A 60 1060 126 HOH HOH . D 4 HOH A 61 1061 66 HOH HOH . D 4 HOH A 62 1062 54 HOH HOH . D 4 HOH A 63 1063 155 HOH HOH . D 4 HOH A 64 1064 19 HOH HOH . D 4 HOH A 65 1065 170 HOH HOH . D 4 HOH A 66 1066 62 HOH HOH . D 4 HOH A 67 1067 93 HOH HOH . D 4 HOH A 68 1068 52 HOH HOH . D 4 HOH A 69 1069 139 HOH HOH . D 4 HOH A 70 1070 24 HOH HOH . D 4 HOH A 71 1071 26 HOH HOH . D 4 HOH A 72 1072 122 HOH HOH . D 4 HOH A 73 1073 47 HOH HOH . D 4 HOH A 74 1074 152 HOH HOH . D 4 HOH A 75 1075 34 HOH HOH . D 4 HOH A 76 1076 82 HOH HOH . D 4 HOH A 77 1077 166 HOH HOH . D 4 HOH A 78 1078 16 HOH HOH . D 4 HOH A 79 1079 89 HOH HOH . D 4 HOH A 80 1080 38 HOH HOH . D 4 HOH A 81 1081 101 HOH HOH . D 4 HOH A 82 1082 7 HOH HOH . D 4 HOH A 83 1083 92 HOH HOH . D 4 HOH A 84 1084 173 HOH HOH . D 4 HOH A 85 1085 22 HOH HOH . D 4 HOH A 86 1086 43 HOH HOH . D 4 HOH A 87 1087 141 HOH HOH . D 4 HOH A 88 1088 87 HOH HOH . D 4 HOH A 89 1089 125 HOH HOH . D 4 HOH A 90 1090 73 HOH HOH . D 4 HOH A 91 1091 39 HOH HOH . D 4 HOH A 92 1092 51 HOH HOH . D 4 HOH A 93 1093 133 HOH HOH . D 4 HOH A 94 1094 172 HOH HOH . D 4 HOH A 95 1095 13 HOH HOH . D 4 HOH A 96 1096 37 HOH HOH . D 4 HOH A 97 1097 14 HOH HOH . D 4 HOH A 98 1098 132 HOH HOH . D 4 HOH A 99 1099 81 HOH HOH . D 4 HOH A 100 1100 90 HOH HOH . D 4 HOH A 101 1101 174 HOH HOH . D 4 HOH A 102 1102 25 HOH HOH . D 4 HOH A 103 1103 131 HOH HOH . D 4 HOH A 104 1104 130 HOH HOH . D 4 HOH A 105 1105 157 HOH HOH . D 4 HOH A 106 1106 138 HOH HOH . D 4 HOH A 107 1107 35 HOH HOH . D 4 HOH A 108 1108 160 HOH HOH . D 4 HOH A 109 1109 88 HOH HOH . D 4 HOH A 110 1110 156 HOH HOH . D 4 HOH A 111 1111 114 HOH HOH . D 4 HOH A 112 1112 135 HOH HOH . D 4 HOH A 113 1113 121 HOH HOH . D 4 HOH A 114 1114 96 HOH HOH . D 4 HOH A 115 1115 36 HOH HOH . D 4 HOH A 116 1116 163 HOH HOH . D 4 HOH A 117 1117 154 HOH HOH . D 4 HOH A 118 1118 105 HOH HOH . D 4 HOH A 119 1119 136 HOH HOH . D 4 HOH A 120 1120 134 HOH HOH . D 4 HOH A 121 1121 168 HOH HOH . D 4 HOH A 122 1122 83 HOH HOH . D 4 HOH A 123 1123 53 HOH HOH . D 4 HOH A 124 1124 91 HOH HOH . D 4 HOH A 125 1125 94 HOH HOH . D 4 HOH A 126 1126 142 HOH HOH . D 4 HOH A 127 1127 102 HOH HOH . D 4 HOH A 128 1128 165 HOH HOH . D 4 HOH A 129 1129 159 HOH HOH . D 4 HOH A 130 1130 95 HOH HOH . D 4 HOH A 131 1131 86 HOH HOH . D 4 HOH A 132 1132 77 HOH HOH . D 4 HOH A 133 1133 151 HOH HOH . D 4 HOH A 134 1134 76 HOH HOH . D 4 HOH A 135 1135 146 HOH HOH . D 4 HOH A 136 1136 110 HOH HOH . D 4 HOH A 137 1137 158 HOH HOH . D 4 HOH A 138 1138 119 HOH HOH . D 4 HOH A 139 1139 169 HOH HOH . D 4 HOH A 140 1140 64 HOH HOH . D 4 HOH A 141 1141 145 HOH HOH . D 4 HOH A 142 1142 69 HOH HOH . D 4 HOH A 143 1143 111 HOH HOH . D 4 HOH A 144 1144 147 HOH HOH . D 4 HOH A 145 1145 148 HOH HOH . D 4 HOH A 146 1146 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HSM . . . B 2 9.644 -3.538 14.707 1 40.15 0 N HSM 901 A 1 HETATM 2 C CA HSM . . . B 2 8.568 -2.665 15.154 1 33.6 0 CA HSM 901 A 1 HETATM 3 C CB HSM . . . B 2 7.28 -3.483 15.34 1 42.38 0 CB HSM 901 A 1 HETATM 4 C CG HSM . . . B 2 6.221 -3.045 14.318 1 54.59 0 CG HSM 901 A 1 HETATM 5 N ND1 HSM . . . B 2 6.456 -2.635 13.085 1 53.62 0 ND1 HSM 901 A 1 HETATM 6 C CD2 HSM . . . B 2 4.864 -3.019 14.513 1 53.3 0 CD2 HSM 901 A 1 HETATM 7 C CE1 HSM . . . B 2 5.274 -2.346 12.507 1 53.06 0 CE1 HSM 901 A 1 HETATM 8 N NE2 HSM . . . B 2 4.298 -2.592 13.401 1 54.19 0 NE2 HSM 901 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #