data_6DYZ # _model_server_result.job_id RVrL6uOx5dS51iTzYrPzFw _model_server_result.datetime_utc '2024-10-19 15:51:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dyz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6DYZ # _exptl.entry_id 6DYZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6DYZ _cell.length_a 122.821 _cell.length_b 122.821 _cell.length_c 44.624 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DYZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 122.821 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 61.4105 106.366106 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6DYZ _atom_sites.fract_transf_matrix[1][1] 0.008142 _atom_sites.fract_transf_matrix[1][2] 0.004701 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 301 2 CL CL . C 2 CL A 1 302 3 CL CL . D 3 PO4 A 1 303 1 PO4 PO4 . E 4 EDO A 1 304 2 EDO EDO . F 4 EDO A 1 305 3 EDO EDO . G 4 EDO A 1 306 4 EDO EDO . H 5 OS2 A 1 307 1 OS2 OS2 . I 6 HOH A 1 401 156 HOH HOH . I 6 HOH A 2 402 411 HOH HOH . I 6 HOH A 3 403 62 HOH HOH . I 6 HOH A 4 404 177 HOH HOH . I 6 HOH A 5 405 435 HOH HOH . I 6 HOH A 6 406 424 HOH HOH . I 6 HOH A 7 407 391 HOH HOH . I 6 HOH A 8 408 390 HOH HOH . I 6 HOH A 9 409 419 HOH HOH . I 6 HOH A 10 410 144 HOH HOH . I 6 HOH A 11 411 85 HOH HOH . I 6 HOH A 12 412 176 HOH HOH . I 6 HOH A 13 413 95 HOH HOH . I 6 HOH A 14 414 59 HOH HOH . I 6 HOH A 15 415 389 HOH HOH . I 6 HOH A 16 416 402 HOH HOH . I 6 HOH A 17 417 395 HOH HOH . I 6 HOH A 18 418 407 HOH HOH . I 6 HOH A 19 419 119 HOH HOH . I 6 HOH A 20 420 181 HOH HOH . I 6 HOH A 21 421 29 HOH HOH . I 6 HOH A 22 422 22 HOH HOH . I 6 HOH A 23 423 89 HOH HOH . I 6 HOH A 24 424 108 HOH HOH . I 6 HOH A 25 425 8 HOH HOH . I 6 HOH A 26 426 6 HOH HOH . I 6 HOH A 27 427 172 HOH HOH . I 6 HOH A 28 428 81 HOH HOH . I 6 HOH A 29 429 261 HOH HOH . I 6 HOH A 30 430 53 HOH HOH . I 6 HOH A 31 431 418 HOH HOH . I 6 HOH A 32 432 97 HOH HOH . I 6 HOH A 33 433 408 HOH HOH . I 6 HOH A 34 434 106 HOH HOH . I 6 HOH A 35 435 149 HOH HOH . I 6 HOH A 36 436 68 HOH HOH . I 6 HOH A 37 437 404 HOH HOH . I 6 HOH A 38 438 91 HOH HOH . I 6 HOH A 39 439 46 HOH HOH . I 6 HOH A 40 440 151 HOH HOH . I 6 HOH A 41 441 104 HOH HOH . I 6 HOH A 42 442 198 HOH HOH . I 6 HOH A 43 443 146 HOH HOH . I 6 HOH A 44 444 120 HOH HOH . I 6 HOH A 45 445 194 HOH HOH . I 6 HOH A 46 446 193 HOH HOH . I 6 HOH A 47 447 83 HOH HOH . I 6 HOH A 48 448 397 HOH HOH . I 6 HOH A 49 449 12 HOH HOH . I 6 HOH A 50 450 66 HOH HOH . I 6 HOH A 51 451 416 HOH HOH . I 6 HOH A 52 452 42 HOH HOH . I 6 HOH A 53 453 30 HOH HOH . I 6 HOH A 54 454 107 HOH HOH . I 6 HOH A 55 455 74 HOH HOH . I 6 HOH A 56 456 284 HOH HOH . I 6 HOH A 57 457 55 HOH HOH . I 6 HOH A 58 458 49 HOH HOH . I 6 HOH A 59 459 72 HOH HOH . I 6 HOH A 60 460 109 HOH HOH . I 6 HOH A 61 461 140 HOH HOH . I 6 HOH A 62 462 71 HOH HOH . I 6 HOH A 63 463 430 HOH HOH . I 6 HOH A 64 464 40 HOH HOH . I 6 HOH A 65 465 173 HOH HOH . I 6 HOH A 66 466 60 HOH HOH . I 6 HOH A 67 467 101 HOH HOH . I 6 HOH A 68 468 37 HOH HOH . I 6 HOH A 69 469 122 HOH HOH . I 6 HOH A 70 470 5 HOH HOH . I 6 HOH A 71 471 51 HOH HOH . I 6 HOH A 72 472 398 HOH HOH . I 6 HOH A 73 473 20 HOH HOH . I 6 HOH A 74 474 157 HOH HOH . I 6 HOH A 75 475 16 HOH HOH . I 6 HOH A 76 476 36 HOH HOH . I 6 HOH A 77 477 19 HOH HOH . I 6 HOH A 78 478 92 HOH HOH . I 6 HOH A 79 479 400 HOH HOH . I 6 HOH A 80 480 9 HOH HOH . I 6 HOH A 81 481 155 HOH HOH . I 6 HOH A 82 482 422 HOH HOH . I 6 HOH A 83 483 21 HOH HOH . I 6 HOH A 84 484 394 HOH HOH . I 6 HOH A 85 485 256 HOH HOH . I 6 HOH A 86 486 200 HOH HOH . I 6 HOH A 87 487 135 HOH HOH . I 6 HOH A 88 488 147 HOH HOH . I 6 HOH A 89 489 94 HOH HOH . I 6 HOH A 90 490 3 HOH HOH . I 6 HOH A 91 491 243 HOH HOH . I 6 HOH A 92 492 63 HOH HOH . I 6 HOH A 93 493 345 HOH HOH . I 6 HOH A 94 494 117 HOH HOH . I 6 HOH A 95 495 431 HOH HOH . I 6 HOH A 96 496 41 HOH HOH . I 6 HOH A 97 497 2 HOH HOH . I 6 HOH A 98 498 23 HOH HOH . I 6 HOH A 99 499 28 HOH HOH . I 6 HOH A 100 500 227 HOH HOH . I 6 HOH A 101 501 366 HOH HOH . I 6 HOH A 102 502 76 HOH HOH . I 6 HOH A 103 503 405 HOH HOH . I 6 HOH A 104 504 18 HOH HOH . I 6 HOH A 105 505 4 HOH HOH . I 6 HOH A 106 506 240 HOH HOH . I 6 HOH A 107 507 58 HOH HOH . I 6 HOH A 108 508 84 HOH HOH . I 6 HOH A 109 509 112 HOH HOH . I 6 HOH A 110 510 98 HOH HOH . I 6 HOH A 111 511 188 HOH HOH . I 6 HOH A 112 512 10 HOH HOH . I 6 HOH A 113 513 225 HOH HOH . I 6 HOH A 114 514 129 HOH HOH . I 6 HOH A 115 515 399 HOH HOH . I 6 HOH A 116 516 105 HOH HOH . I 6 HOH A 117 517 38 HOH HOH . I 6 HOH A 118 518 1 HOH HOH . I 6 HOH A 119 519 47 HOH HOH . I 6 HOH A 120 520 183 HOH HOH . I 6 HOH A 121 521 54 HOH HOH . I 6 HOH A 122 522 387 HOH HOH . I 6 HOH A 123 523 165 HOH HOH . I 6 HOH A 124 524 195 HOH HOH . I 6 HOH A 125 525 189 HOH HOH . I 6 HOH A 126 526 126 HOH HOH . I 6 HOH A 127 527 182 HOH HOH . I 6 HOH A 128 528 432 HOH HOH . I 6 HOH A 129 529 32 HOH HOH . I 6 HOH A 130 530 426 HOH HOH . I 6 HOH A 131 531 67 HOH HOH . I 6 HOH A 132 532 123 HOH HOH . I 6 HOH A 133 533 31 HOH HOH . I 6 HOH A 134 534 35 HOH HOH . I 6 HOH A 135 535 11 HOH HOH . I 6 HOH A 136 536 24 HOH HOH . I 6 HOH A 137 537 61 HOH HOH . I 6 HOH A 138 538 131 HOH HOH . I 6 HOH A 139 539 115 HOH HOH . I 6 HOH A 140 540 13 HOH HOH . I 6 HOH A 141 541 52 HOH HOH . I 6 HOH A 142 542 132 HOH HOH . I 6 HOH A 143 543 26 HOH HOH . I 6 HOH A 144 544 167 HOH HOH . I 6 HOH A 145 545 169 HOH HOH . I 6 HOH A 146 546 118 HOH HOH . I 6 HOH A 147 547 43 HOH HOH . I 6 HOH A 148 548 73 HOH HOH . I 6 HOH A 149 549 39 HOH HOH . I 6 HOH A 150 550 116 HOH HOH . I 6 HOH A 151 551 191 HOH HOH . I 6 HOH A 152 552 163 HOH HOH . I 6 HOH A 153 553 27 HOH HOH . I 6 HOH A 154 554 159 HOH HOH . I 6 HOH A 155 555 111 HOH HOH . I 6 HOH A 156 556 100 HOH HOH . I 6 HOH A 157 557 93 HOH HOH . I 6 HOH A 158 558 121 HOH HOH . I 6 HOH A 159 559 64 HOH HOH . I 6 HOH A 160 560 221 HOH HOH . I 6 HOH A 161 561 48 HOH HOH . I 6 HOH A 162 562 25 HOH HOH . I 6 HOH A 163 563 70 HOH HOH . I 6 HOH A 164 564 7 HOH HOH . I 6 HOH A 165 565 14 HOH HOH . I 6 HOH A 166 566 388 HOH HOH . I 6 HOH A 167 567 57 HOH HOH . I 6 HOH A 168 568 367 HOH HOH . I 6 HOH A 169 569 124 HOH HOH . I 6 HOH A 170 570 17 HOH HOH . I 6 HOH A 171 571 45 HOH HOH . I 6 HOH A 172 572 226 HOH HOH . I 6 HOH A 173 573 202 HOH HOH . I 6 HOH A 174 574 143 HOH HOH . I 6 HOH A 175 575 79 HOH HOH . I 6 HOH A 176 576 114 HOH HOH . I 6 HOH A 177 577 428 HOH HOH . I 6 HOH A 178 578 378 HOH HOH . I 6 HOH A 179 579 238 HOH HOH . I 6 HOH A 180 580 127 HOH HOH . I 6 HOH A 181 581 433 HOH HOH . I 6 HOH A 182 582 77 HOH HOH . I 6 HOH A 183 583 136 HOH HOH . I 6 HOH A 184 584 15 HOH HOH . I 6 HOH A 185 585 88 HOH HOH . I 6 HOH A 186 586 356 HOH HOH . I 6 HOH A 187 587 179 HOH HOH . I 6 HOH A 188 588 190 HOH HOH . I 6 HOH A 189 589 125 HOH HOH . I 6 HOH A 190 590 347 HOH HOH . I 6 HOH A 191 591 99 HOH HOH . I 6 HOH A 192 592 216 HOH HOH . I 6 HOH A 193 593 212 HOH HOH . I 6 HOH A 194 594 228 HOH HOH . I 6 HOH A 195 595 393 HOH HOH . I 6 HOH A 196 596 56 HOH HOH . I 6 HOH A 197 597 87 HOH HOH . I 6 HOH A 198 598 75 HOH HOH . I 6 HOH A 199 599 164 HOH HOH . I 6 HOH A 200 600 103 HOH HOH . I 6 HOH A 201 601 412 HOH HOH . I 6 HOH A 202 602 414 HOH HOH . I 6 HOH A 203 603 420 HOH HOH . I 6 HOH A 204 604 280 HOH HOH . I 6 HOH A 205 605 403 HOH HOH . I 6 HOH A 206 606 392 HOH HOH . I 6 HOH A 207 607 350 HOH HOH . I 6 HOH A 208 608 78 HOH HOH . I 6 HOH A 209 609 96 HOH HOH . I 6 HOH A 210 610 69 HOH HOH . I 6 HOH A 211 611 148 HOH HOH . I 6 HOH A 212 612 417 HOH HOH . I 6 HOH A 213 613 196 HOH HOH . I 6 HOH A 214 614 174 HOH HOH . I 6 HOH A 215 615 358 HOH HOH . I 6 HOH A 216 616 142 HOH HOH . I 6 HOH A 217 617 368 HOH HOH . I 6 HOH A 218 618 409 HOH HOH . I 6 HOH A 219 619 145 HOH HOH . I 6 HOH A 220 620 361 HOH HOH . I 6 HOH A 221 621 296 HOH HOH . I 6 HOH A 222 622 138 HOH HOH . I 6 HOH A 223 623 421 HOH HOH . I 6 HOH A 224 624 315 HOH HOH . I 6 HOH A 225 625 65 HOH HOH . I 6 HOH A 226 626 287 HOH HOH . I 6 HOH A 227 627 429 HOH HOH . I 6 HOH A 228 628 401 HOH HOH . I 6 HOH A 229 629 244 HOH HOH . I 6 HOH A 230 630 158 HOH HOH . I 6 HOH A 231 631 44 HOH HOH . I 6 HOH A 232 632 354 HOH HOH . I 6 HOH A 233 633 425 HOH HOH . I 6 HOH A 234 634 128 HOH HOH . I 6 HOH A 235 635 90 HOH HOH . I 6 HOH A 236 636 406 HOH HOH . I 6 HOH A 237 637 241 HOH HOH . I 6 HOH A 238 638 223 HOH HOH . I 6 HOH A 239 639 410 HOH HOH . I 6 HOH A 240 640 355 HOH HOH . I 6 HOH A 241 641 353 HOH HOH . I 6 HOH A 242 642 254 HOH HOH . I 6 HOH A 243 643 385 HOH HOH . I 6 HOH A 244 644 217 HOH HOH . I 6 HOH A 245 645 161 HOH HOH . I 6 HOH A 246 646 133 HOH HOH . I 6 HOH A 247 647 434 HOH HOH . I 6 HOH A 248 648 186 HOH HOH . I 6 HOH A 249 649 383 HOH HOH . I 6 HOH A 250 650 360 HOH HOH . I 6 HOH A 251 651 436 HOH HOH . I 6 HOH A 252 652 427 HOH HOH . I 6 HOH A 253 653 232 HOH HOH . I 6 HOH A 254 654 185 HOH HOH . I 6 HOH A 255 655 357 HOH HOH . I 6 HOH A 256 656 102 HOH HOH . I 6 HOH A 257 657 276 HOH HOH . I 6 HOH A 258 658 171 HOH HOH . I 6 HOH A 259 659 349 HOH HOH . I 6 HOH A 260 660 206 HOH HOH . I 6 HOH A 261 661 215 HOH HOH . I 6 HOH A 262 662 380 HOH HOH . I 6 HOH A 263 663 386 HOH HOH . I 6 HOH A 264 664 413 HOH HOH . I 6 HOH A 265 665 374 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 65.328 35.235 28.665 1 28.29 ? C1 EDO 304 A 1 HETATM 2 O O1 EDO . . . E 4 64.18 35.928 28.16 1 25.86 ? O1 EDO 304 A 1 HETATM 3 C C2 EDO . . . E 4 65.097 33.74 28.903 1 27.52 ? C2 EDO 304 A 1 HETATM 4 O O2 EDO . . . E 4 63.682 33.483 28.853 1 31.69 ? O2 EDO 304 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #