data_6DZ0 # _model_server_result.job_id arI754tfa4QjyATLv9X0hg _model_server_result.datetime_utc '2024-11-30 18:54:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6DZ0 # _exptl.entry_id 6DZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6DZ0 _cell.length_a 121.812 _cell.length_b 121.812 _cell.length_c 44.372 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -y+2,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 243.624 0 0 3 'crystal symmetry operation' 3_775 -x+y+2,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 121.812 210.984573 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6DZ0 _atom_sites.fract_transf_matrix[1][1] 0.008209 _atom_sites.fract_transf_matrix[1][2] 0.00474 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 301 1 PO4 PO4 . C 3 EDO A 1 302 1 EDO EDO . D 3 EDO A 1 303 2 EDO EDO . E 3 EDO A 1 304 3 EDO EDO . F 3 EDO A 1 305 4 EDO EDO . G 3 EDO A 1 306 5 EDO EDO . H 4 OS3 A 1 307 1 OS3 OS3 . I 5 CL A 1 308 1 CL CL . J 6 HOH A 1 401 388 HOH HOH . J 6 HOH A 2 402 364 HOH HOH . J 6 HOH A 3 403 24 HOH HOH . J 6 HOH A 4 404 367 HOH HOH . J 6 HOH A 5 405 132 HOH HOH . J 6 HOH A 6 406 375 HOH HOH . J 6 HOH A 7 407 366 HOH HOH . J 6 HOH A 8 408 374 HOH HOH . J 6 HOH A 9 409 293 HOH HOH . J 6 HOH A 10 410 194 HOH HOH . J 6 HOH A 11 411 347 HOH HOH . J 6 HOH A 12 412 73 HOH HOH . J 6 HOH A 13 413 52 HOH HOH . J 6 HOH A 14 414 156 HOH HOH . J 6 HOH A 15 415 36 HOH HOH . J 6 HOH A 16 416 71 HOH HOH . J 6 HOH A 17 417 120 HOH HOH . J 6 HOH A 18 418 339 HOH HOH . J 6 HOH A 19 419 355 HOH HOH . J 6 HOH A 20 420 66 HOH HOH . J 6 HOH A 21 421 195 HOH HOH . J 6 HOH A 22 422 166 HOH HOH . J 6 HOH A 23 423 335 HOH HOH . J 6 HOH A 24 424 121 HOH HOH . J 6 HOH A 25 425 224 HOH HOH . J 6 HOH A 26 426 23 HOH HOH . J 6 HOH A 27 427 207 HOH HOH . J 6 HOH A 28 428 67 HOH HOH . J 6 HOH A 29 429 75 HOH HOH . J 6 HOH A 30 430 90 HOH HOH . J 6 HOH A 31 431 104 HOH HOH . J 6 HOH A 32 432 197 HOH HOH . J 6 HOH A 33 433 287 HOH HOH . J 6 HOH A 34 434 10 HOH HOH . J 6 HOH A 35 435 150 HOH HOH . J 6 HOH A 36 436 31 HOH HOH . J 6 HOH A 37 437 62 HOH HOH . J 6 HOH A 38 438 368 HOH HOH . J 6 HOH A 39 439 26 HOH HOH . J 6 HOH A 40 440 180 HOH HOH . J 6 HOH A 41 441 109 HOH HOH . J 6 HOH A 42 442 110 HOH HOH . J 6 HOH A 43 443 4 HOH HOH . J 6 HOH A 44 444 30 HOH HOH . J 6 HOH A 45 445 60 HOH HOH . J 6 HOH A 46 446 168 HOH HOH . J 6 HOH A 47 447 3 HOH HOH . J 6 HOH A 48 448 32 HOH HOH . J 6 HOH A 49 449 157 HOH HOH . J 6 HOH A 50 450 101 HOH HOH . J 6 HOH A 51 451 9 HOH HOH . J 6 HOH A 52 452 95 HOH HOH . J 6 HOH A 53 453 115 HOH HOH . J 6 HOH A 54 454 147 HOH HOH . J 6 HOH A 55 455 117 HOH HOH . J 6 HOH A 56 456 43 HOH HOH . J 6 HOH A 57 457 46 HOH HOH . J 6 HOH A 58 458 332 HOH HOH . J 6 HOH A 59 459 92 HOH HOH . J 6 HOH A 60 460 249 HOH HOH . J 6 HOH A 61 461 88 HOH HOH . J 6 HOH A 62 462 344 HOH HOH . J 6 HOH A 63 463 2 HOH HOH . J 6 HOH A 64 464 130 HOH HOH . J 6 HOH A 65 465 87 HOH HOH . J 6 HOH A 66 466 151 HOH HOH . J 6 HOH A 67 467 171 HOH HOH . J 6 HOH A 68 468 42 HOH HOH . J 6 HOH A 69 469 154 HOH HOH . J 6 HOH A 70 470 54 HOH HOH . J 6 HOH A 71 471 386 HOH HOH . J 6 HOH A 72 472 105 HOH HOH . J 6 HOH A 73 473 86 HOH HOH . J 6 HOH A 74 474 27 HOH HOH . J 6 HOH A 75 475 114 HOH HOH . J 6 HOH A 76 476 338 HOH HOH . J 6 HOH A 77 477 164 HOH HOH . J 6 HOH A 78 478 48 HOH HOH . J 6 HOH A 79 479 349 HOH HOH . J 6 HOH A 80 480 183 HOH HOH . J 6 HOH A 81 481 61 HOH HOH . J 6 HOH A 82 482 6 HOH HOH . J 6 HOH A 83 483 16 HOH HOH . J 6 HOH A 84 484 11 HOH HOH . J 6 HOH A 85 485 138 HOH HOH . J 6 HOH A 86 486 350 HOH HOH . J 6 HOH A 87 487 106 HOH HOH . J 6 HOH A 88 488 161 HOH HOH . J 6 HOH A 89 489 78 HOH HOH . J 6 HOH A 90 490 12 HOH HOH . J 6 HOH A 91 491 56 HOH HOH . J 6 HOH A 92 492 77 HOH HOH . J 6 HOH A 93 493 346 HOH HOH . J 6 HOH A 94 494 236 HOH HOH . J 6 HOH A 95 495 330 HOH HOH . J 6 HOH A 96 496 1 HOH HOH . J 6 HOH A 97 497 142 HOH HOH . J 6 HOH A 98 498 41 HOH HOH . J 6 HOH A 99 499 384 HOH HOH . J 6 HOH A 100 500 203 HOH HOH . J 6 HOH A 101 501 162 HOH HOH . J 6 HOH A 102 502 22 HOH HOH . J 6 HOH A 103 503 112 HOH HOH . J 6 HOH A 104 504 25 HOH HOH . J 6 HOH A 105 505 241 HOH HOH . J 6 HOH A 106 506 50 HOH HOH . J 6 HOH A 107 507 100 HOH HOH . J 6 HOH A 108 508 57 HOH HOH . J 6 HOH A 109 509 65 HOH HOH . J 6 HOH A 110 510 83 HOH HOH . J 6 HOH A 111 511 329 HOH HOH . J 6 HOH A 112 512 33 HOH HOH . J 6 HOH A 113 513 64 HOH HOH . J 6 HOH A 114 514 348 HOH HOH . J 6 HOH A 115 515 37 HOH HOH . J 6 HOH A 116 516 169 HOH HOH . J 6 HOH A 117 517 155 HOH HOH . J 6 HOH A 118 518 38 HOH HOH . J 6 HOH A 119 519 82 HOH HOH . J 6 HOH A 120 520 331 HOH HOH . J 6 HOH A 121 521 354 HOH HOH . J 6 HOH A 122 522 17 HOH HOH . J 6 HOH A 123 523 20 HOH HOH . J 6 HOH A 124 524 356 HOH HOH . J 6 HOH A 125 525 59 HOH HOH . J 6 HOH A 126 526 373 HOH HOH . J 6 HOH A 127 527 218 HOH HOH . J 6 HOH A 128 528 98 HOH HOH . J 6 HOH A 129 529 125 HOH HOH . J 6 HOH A 130 530 334 HOH HOH . J 6 HOH A 131 531 124 HOH HOH . J 6 HOH A 132 532 69 HOH HOH . J 6 HOH A 133 533 102 HOH HOH . J 6 HOH A 134 534 19 HOH HOH . J 6 HOH A 135 535 21 HOH HOH . J 6 HOH A 136 536 93 HOH HOH . J 6 HOH A 137 537 213 HOH HOH . J 6 HOH A 138 538 91 HOH HOH . J 6 HOH A 139 539 34 HOH HOH . J 6 HOH A 140 540 144 HOH HOH . J 6 HOH A 141 541 45 HOH HOH . J 6 HOH A 142 542 70 HOH HOH . J 6 HOH A 143 543 304 HOH HOH . J 6 HOH A 144 544 85 HOH HOH . J 6 HOH A 145 545 18 HOH HOH . J 6 HOH A 146 546 118 HOH HOH . J 6 HOH A 147 547 13 HOH HOH . J 6 HOH A 148 548 182 HOH HOH . J 6 HOH A 149 549 44 HOH HOH . J 6 HOH A 150 550 139 HOH HOH . J 6 HOH A 151 551 63 HOH HOH . J 6 HOH A 152 552 49 HOH HOH . J 6 HOH A 153 553 129 HOH HOH . J 6 HOH A 154 554 15 HOH HOH . J 6 HOH A 155 555 55 HOH HOH . J 6 HOH A 156 556 363 HOH HOH . J 6 HOH A 157 557 89 HOH HOH . J 6 HOH A 158 558 14 HOH HOH . J 6 HOH A 159 559 8 HOH HOH . J 6 HOH A 160 560 244 HOH HOH . J 6 HOH A 161 561 40 HOH HOH . J 6 HOH A 162 562 371 HOH HOH . J 6 HOH A 163 563 35 HOH HOH . J 6 HOH A 164 564 39 HOH HOH . J 6 HOH A 165 565 222 HOH HOH . J 6 HOH A 166 566 5 HOH HOH . J 6 HOH A 167 567 153 HOH HOH . J 6 HOH A 168 568 53 HOH HOH . J 6 HOH A 169 569 187 HOH HOH . J 6 HOH A 170 570 333 HOH HOH . J 6 HOH A 171 571 137 HOH HOH . J 6 HOH A 172 572 74 HOH HOH . J 6 HOH A 173 573 135 HOH HOH . J 6 HOH A 174 574 96 HOH HOH . J 6 HOH A 175 575 47 HOH HOH . J 6 HOH A 176 576 51 HOH HOH . J 6 HOH A 177 577 190 HOH HOH . J 6 HOH A 178 578 376 HOH HOH . J 6 HOH A 179 579 387 HOH HOH . J 6 HOH A 180 580 128 HOH HOH . J 6 HOH A 181 581 94 HOH HOH . J 6 HOH A 182 582 342 HOH HOH . J 6 HOH A 183 583 29 HOH HOH . J 6 HOH A 184 584 68 HOH HOH . J 6 HOH A 185 585 319 HOH HOH . J 6 HOH A 186 586 372 HOH HOH . J 6 HOH A 187 587 178 HOH HOH . J 6 HOH A 188 588 210 HOH HOH . J 6 HOH A 189 589 370 HOH HOH . J 6 HOH A 190 590 167 HOH HOH . J 6 HOH A 191 591 362 HOH HOH . J 6 HOH A 192 592 327 HOH HOH . J 6 HOH A 193 593 385 HOH HOH . J 6 HOH A 194 594 340 HOH HOH . J 6 HOH A 195 595 145 HOH HOH . J 6 HOH A 196 596 382 HOH HOH . J 6 HOH A 197 597 353 HOH HOH . J 6 HOH A 198 598 389 HOH HOH . J 6 HOH A 199 599 377 HOH HOH . J 6 HOH A 200 600 306 HOH HOH . J 6 HOH A 201 601 325 HOH HOH . J 6 HOH A 202 602 58 HOH HOH . J 6 HOH A 203 603 307 HOH HOH . J 6 HOH A 204 604 343 HOH HOH . J 6 HOH A 205 605 305 HOH HOH . J 6 HOH A 206 606 390 HOH HOH . J 6 HOH A 207 607 175 HOH HOH . J 6 HOH A 208 608 324 HOH HOH . J 6 HOH A 209 609 336 HOH HOH . J 6 HOH A 210 610 308 HOH HOH . J 6 HOH A 211 611 358 HOH HOH . J 6 HOH A 212 612 317 HOH HOH . J 6 HOH A 213 613 140 HOH HOH . J 6 HOH A 214 614 123 HOH HOH . J 6 HOH A 215 615 359 HOH HOH . J 6 HOH A 216 616 28 HOH HOH . J 6 HOH A 217 617 158 HOH HOH . J 6 HOH A 218 618 379 HOH HOH . J 6 HOH A 219 619 191 HOH HOH . J 6 HOH A 220 620 360 HOH HOH . J 6 HOH A 221 621 351 HOH HOH . J 6 HOH A 222 622 226 HOH HOH . J 6 HOH A 223 623 365 HOH HOH . J 6 HOH A 224 624 352 HOH HOH . J 6 HOH A 225 625 186 HOH HOH . J 6 HOH A 226 626 303 HOH HOH . J 6 HOH A 227 627 253 HOH HOH . J 6 HOH A 228 628 314 HOH HOH . J 6 HOH A 229 629 184 HOH HOH . J 6 HOH A 230 630 381 HOH HOH . J 6 HOH A 231 631 369 HOH HOH . J 6 HOH A 232 632 380 HOH HOH . J 6 HOH A 233 633 176 HOH HOH . J 6 HOH A 234 634 116 HOH HOH . J 6 HOH A 235 635 122 HOH HOH . J 6 HOH A 236 636 126 HOH HOH . J 6 HOH A 237 637 341 HOH HOH . J 6 HOH A 238 638 316 HOH HOH . J 6 HOH A 239 639 127 HOH HOH . J 6 HOH A 240 640 378 HOH HOH . J 6 HOH A 241 641 383 HOH HOH . J 6 HOH A 242 642 309 HOH HOH . J 6 HOH A 243 643 143 HOH HOH . J 6 HOH A 244 644 103 HOH HOH . J 6 HOH A 245 645 181 HOH HOH . J 6 HOH A 246 646 313 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 104.333 51.52 30.519 1 47.95 ? C1 EDO 303 A 1 HETATM 2 O O1 EDO . . . D 3 102.897 51.462 30.521 1 48.82 ? O1 EDO 303 A 1 HETATM 3 C C2 EDO . . . D 3 104.837 52.766 31.231 1 48.39 ? C2 EDO 303 A 1 HETATM 4 O O2 EDO . . . D 3 103.781 53.455 31.922 1 45.68 ? O2 EDO 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 4 #