data_6DZ2 # _model_server_result.job_id XzmXtXLjxY22VVFbYAwX_g _model_server_result.datetime_utc '2024-10-19 11:29:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":305}' # _entry.id 6DZ2 # _exptl.entry_id 6DZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DZ2 _cell.length_a 79.39 _cell.length_b 135.316 _cell.length_c 159.268 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 K N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 159 A CYS 145 1_555 A SG CYS 225 A CYS 211 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 B SG CYS 159 B CYS 145 1_555 B SG CYS 225 B CYS 211 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.013 ? disulf ? disulf3 C SG CYS 159 C CYS 145 1_555 C SG CYS 225 C CYS 211 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 90 n n C1 C2 EDO sing 91 n n C1 H11 EDO sing 92 n n C1 H12 EDO sing 93 n n O1 HO1 EDO sing 94 n n C2 O2 EDO sing 95 n n C2 H21 EDO sing 96 n n C2 H22 EDO sing 97 n n O2 HO2 EDO sing 98 n n # _atom_sites.entry_id 6DZ2 _atom_sites.fract_transf_matrix[1][1] 0.012596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 EDO A 1 301 1 EDO EDO . E 2 EDO A 1 302 3 EDO EDO . F 2 EDO A 1 303 9 EDO EDO . G 3 CL A 1 304 1 CL CL . H 3 CL A 1 305 5 CL CL . I 4 ACY A 1 306 1 ACY ACY . J 5 OS5 A 1 307 1 OS5 OS5 . K 2 EDO B 1 301 4 EDO EDO . L 3 CL B 1 302 3 CL CL . M 5 OS5 B 1 303 2 OS5 OS5 . N 2 EDO C 1 301 2 EDO EDO . O 2 EDO C 1 302 5 EDO EDO . P 2 EDO C 1 303 6 EDO EDO . Q 2 EDO C 1 304 7 EDO EDO . R 2 EDO C 1 305 8 EDO EDO . S 2 EDO C 1 306 10 EDO EDO . T 3 CL C 1 307 4 CL CL . U 5 OS5 C 1 308 3 OS5 OS5 . V 6 HOH A 1 401 452 HOH HOH . V 6 HOH A 2 402 496 HOH HOH . V 6 HOH A 3 403 447 HOH HOH . V 6 HOH A 4 404 473 HOH HOH . V 6 HOH A 5 405 458 HOH HOH . V 6 HOH A 6 406 467 HOH HOH . V 6 HOH A 7 407 405 HOH HOH . V 6 HOH A 8 408 103 HOH HOH . V 6 HOH A 9 409 130 HOH HOH . V 6 HOH A 10 410 269 HOH HOH . V 6 HOH A 11 411 14 HOH HOH . V 6 HOH A 12 412 149 HOH HOH . V 6 HOH A 13 413 63 HOH HOH . V 6 HOH A 14 414 486 HOH HOH . V 6 HOH A 15 415 268 HOH HOH . V 6 HOH A 16 416 477 HOH HOH . V 6 HOH A 17 417 443 HOH HOH . V 6 HOH A 18 418 84 HOH HOH . V 6 HOH A 19 419 75 HOH HOH . V 6 HOH A 20 420 2 HOH HOH . V 6 HOH A 21 421 491 HOH HOH . V 6 HOH A 22 422 66 HOH HOH . V 6 HOH A 23 423 413 HOH HOH . V 6 HOH A 24 424 26 HOH HOH . V 6 HOH A 25 425 40 HOH HOH . V 6 HOH A 26 426 317 HOH HOH . V 6 HOH A 27 427 414 HOH HOH . V 6 HOH A 28 428 487 HOH HOH . V 6 HOH A 29 429 179 HOH HOH . V 6 HOH A 30 430 95 HOH HOH . V 6 HOH A 31 431 250 HOH HOH . V 6 HOH A 32 432 460 HOH HOH . V 6 HOH A 33 433 50 HOH HOH . V 6 HOH A 34 434 112 HOH HOH . V 6 HOH A 35 435 169 HOH HOH . V 6 HOH A 36 436 48 HOH HOH . V 6 HOH A 37 437 19 HOH HOH . V 6 HOH A 38 438 478 HOH HOH . V 6 HOH A 39 439 490 HOH HOH . V 6 HOH A 40 440 236 HOH HOH . V 6 HOH A 41 441 11 HOH HOH . V 6 HOH A 42 442 107 HOH HOH . V 6 HOH A 43 443 254 HOH HOH . V 6 HOH A 44 444 101 HOH HOH . V 6 HOH A 45 445 116 HOH HOH . V 6 HOH A 46 446 148 HOH HOH . V 6 HOH A 47 447 215 HOH HOH . V 6 HOH A 48 448 78 HOH HOH . V 6 HOH A 49 449 284 HOH HOH . V 6 HOH A 50 450 7 HOH HOH . V 6 HOH A 51 451 200 HOH HOH . V 6 HOH A 52 452 462 HOH HOH . V 6 HOH A 53 453 138 HOH HOH . V 6 HOH A 54 454 82 HOH HOH . V 6 HOH A 55 455 34 HOH HOH . V 6 HOH A 56 456 54 HOH HOH . V 6 HOH A 57 457 41 HOH HOH . V 6 HOH A 58 458 256 HOH HOH . V 6 HOH A 59 459 12 HOH HOH . V 6 HOH A 60 460 60 HOH HOH . V 6 HOH A 61 461 20 HOH HOH . V 6 HOH A 62 462 466 HOH HOH . V 6 HOH A 63 463 489 HOH HOH . V 6 HOH A 64 464 164 HOH HOH . V 6 HOH A 65 465 193 HOH HOH . V 6 HOH A 66 466 233 HOH HOH . V 6 HOH A 67 467 502 HOH HOH . V 6 HOH A 68 468 142 HOH HOH . V 6 HOH A 69 469 168 HOH HOH . V 6 HOH A 70 470 453 HOH HOH . V 6 HOH A 71 471 23 HOH HOH . V 6 HOH A 72 472 298 HOH HOH . V 6 HOH A 73 473 39 HOH HOH . V 6 HOH A 74 474 15 HOH HOH . V 6 HOH A 75 475 96 HOH HOH . V 6 HOH A 76 476 175 HOH HOH . V 6 HOH A 77 477 106 HOH HOH . V 6 HOH A 78 478 493 HOH HOH . V 6 HOH A 79 479 165 HOH HOH . V 6 HOH A 80 480 227 HOH HOH . V 6 HOH A 81 481 42 HOH HOH . V 6 HOH A 82 482 45 HOH HOH . V 6 HOH A 83 483 448 HOH HOH . V 6 HOH A 84 484 483 HOH HOH . V 6 HOH A 85 485 184 HOH HOH . V 6 HOH A 86 486 438 HOH HOH . V 6 HOH A 87 487 492 HOH HOH . V 6 HOH A 88 488 252 HOH HOH . V 6 HOH A 89 489 126 HOH HOH . V 6 HOH A 90 490 498 HOH HOH . V 6 HOH A 91 491 484 HOH HOH . V 6 HOH A 92 492 494 HOH HOH . V 6 HOH A 93 493 497 HOH HOH . V 6 HOH A 94 494 418 HOH HOH . V 6 HOH A 95 495 423 HOH HOH . V 6 HOH A 96 496 277 HOH HOH . V 6 HOH A 97 497 419 HOH HOH . V 6 HOH A 98 498 482 HOH HOH . V 6 HOH A 99 499 429 HOH HOH . V 6 HOH A 100 500 147 HOH HOH . V 6 HOH A 101 501 153 HOH HOH . W 6 HOH B 1 401 481 HOH HOH . W 6 HOH B 2 402 475 HOH HOH . W 6 HOH B 3 403 22 HOH HOH . W 6 HOH B 4 404 455 HOH HOH . W 6 HOH B 5 405 59 HOH HOH . W 6 HOH B 6 406 10 HOH HOH . W 6 HOH B 7 407 471 HOH HOH . W 6 HOH B 8 408 205 HOH HOH . W 6 HOH B 9 409 18 HOH HOH . W 6 HOH B 10 410 461 HOH HOH . W 6 HOH B 11 411 472 HOH HOH . W 6 HOH B 12 412 204 HOH HOH . W 6 HOH B 13 413 163 HOH HOH . W 6 HOH B 14 414 464 HOH HOH . W 6 HOH B 15 415 119 HOH HOH . W 6 HOH B 16 416 243 HOH HOH . W 6 HOH B 17 417 65 HOH HOH . W 6 HOH B 18 418 440 HOH HOH . W 6 HOH B 19 419 140 HOH HOH . W 6 HOH B 20 420 73 HOH HOH . W 6 HOH B 21 421 53 HOH HOH . W 6 HOH B 22 422 143 HOH HOH . W 6 HOH B 23 423 456 HOH HOH . W 6 HOH B 24 424 92 HOH HOH . W 6 HOH B 25 425 98 HOH HOH . W 6 HOH B 26 426 85 HOH HOH . W 6 HOH B 27 427 476 HOH HOH . W 6 HOH B 28 428 212 HOH HOH . W 6 HOH B 29 429 56 HOH HOH . W 6 HOH B 30 430 297 HOH HOH . W 6 HOH B 31 431 155 HOH HOH . W 6 HOH B 32 432 28 HOH HOH . W 6 HOH B 33 433 64 HOH HOH . W 6 HOH B 34 434 81 HOH HOH . W 6 HOH B 35 435 454 HOH HOH . W 6 HOH B 36 436 99 HOH HOH . W 6 HOH B 37 437 182 HOH HOH . W 6 HOH B 38 438 218 HOH HOH . W 6 HOH B 39 439 29 HOH HOH . W 6 HOH B 40 440 199 HOH HOH . W 6 HOH B 41 441 167 HOH HOH . W 6 HOH B 42 442 445 HOH HOH . W 6 HOH B 43 443 191 HOH HOH . W 6 HOH B 44 444 137 HOH HOH . W 6 HOH B 45 445 120 HOH HOH . W 6 HOH B 46 446 109 HOH HOH . W 6 HOH B 47 447 451 HOH HOH . W 6 HOH B 48 448 62 HOH HOH . W 6 HOH B 49 449 158 HOH HOH . W 6 HOH B 50 450 36 HOH HOH . W 6 HOH B 51 451 249 HOH HOH . W 6 HOH B 52 452 500 HOH HOH . W 6 HOH B 53 453 9 HOH HOH . W 6 HOH B 54 454 16 HOH HOH . W 6 HOH B 55 455 117 HOH HOH . W 6 HOH B 56 456 504 HOH HOH . W 6 HOH B 57 457 228 HOH HOH . W 6 HOH B 58 458 446 HOH HOH . W 6 HOH B 59 459 505 HOH HOH . W 6 HOH B 60 460 230 HOH HOH . W 6 HOH B 61 461 55 HOH HOH . W 6 HOH B 62 462 309 HOH HOH . W 6 HOH B 63 463 141 HOH HOH . W 6 HOH B 64 464 111 HOH HOH . W 6 HOH B 65 465 43 HOH HOH . W 6 HOH B 66 466 290 HOH HOH . W 6 HOH B 67 467 480 HOH HOH . W 6 HOH B 68 468 139 HOH HOH . W 6 HOH B 69 469 196 HOH HOH . W 6 HOH B 70 470 255 HOH HOH . W 6 HOH B 71 471 470 HOH HOH . W 6 HOH B 72 472 170 HOH HOH . W 6 HOH B 73 473 457 HOH HOH . W 6 HOH B 74 474 104 HOH HOH . W 6 HOH B 75 475 503 HOH HOH . W 6 HOH B 76 476 495 HOH HOH . W 6 HOH B 77 477 189 HOH HOH . W 6 HOH B 78 478 425 HOH HOH . W 6 HOH B 79 479 245 HOH HOH . W 6 HOH B 80 480 449 HOH HOH . W 6 HOH B 81 481 390 HOH HOH . W 6 HOH B 82 482 463 HOH HOH . W 6 HOH B 83 483 219 HOH HOH . W 6 HOH B 84 484 422 HOH HOH . W 6 HOH B 85 485 439 HOH HOH . X 6 HOH C 1 401 474 HOH HOH . X 6 HOH C 2 402 181 HOH HOH . X 6 HOH C 3 403 279 HOH HOH . X 6 HOH C 4 404 433 HOH HOH . X 6 HOH C 5 405 459 HOH HOH . X 6 HOH C 6 406 176 HOH HOH . X 6 HOH C 7 407 58 HOH HOH . X 6 HOH C 8 408 52 HOH HOH . X 6 HOH C 9 409 69 HOH HOH . X 6 HOH C 10 410 89 HOH HOH . X 6 HOH C 11 411 239 HOH HOH . X 6 HOH C 12 412 465 HOH HOH . X 6 HOH C 13 413 70 HOH HOH . X 6 HOH C 14 414 134 HOH HOH . X 6 HOH C 15 415 386 HOH HOH . X 6 HOH C 16 416 336 HOH HOH . X 6 HOH C 17 417 32 HOH HOH . X 6 HOH C 18 418 216 HOH HOH . X 6 HOH C 19 419 77 HOH HOH . X 6 HOH C 20 420 133 HOH HOH . X 6 HOH C 21 421 488 HOH HOH . X 6 HOH C 22 422 234 HOH HOH . X 6 HOH C 23 423 5 HOH HOH . X 6 HOH C 24 424 30 HOH HOH . X 6 HOH C 25 425 308 HOH HOH . X 6 HOH C 26 426 61 HOH HOH . X 6 HOH C 27 427 13 HOH HOH . X 6 HOH C 28 428 129 HOH HOH . X 6 HOH C 29 429 171 HOH HOH . X 6 HOH C 30 430 469 HOH HOH . X 6 HOH C 31 431 31 HOH HOH . X 6 HOH C 32 432 8 HOH HOH . X 6 HOH C 33 433 25 HOH HOH . X 6 HOH C 34 434 97 HOH HOH . X 6 HOH C 35 435 198 HOH HOH . X 6 HOH C 36 436 118 HOH HOH . X 6 HOH C 37 437 105 HOH HOH . X 6 HOH C 38 438 24 HOH HOH . X 6 HOH C 39 439 46 HOH HOH . X 6 HOH C 40 440 177 HOH HOH . X 6 HOH C 41 441 110 HOH HOH . X 6 HOH C 42 442 444 HOH HOH . X 6 HOH C 43 443 251 HOH HOH . X 6 HOH C 44 444 38 HOH HOH . X 6 HOH C 45 445 203 HOH HOH . X 6 HOH C 46 446 192 HOH HOH . X 6 HOH C 47 447 86 HOH HOH . X 6 HOH C 48 448 210 HOH HOH . X 6 HOH C 49 449 72 HOH HOH . X 6 HOH C 50 450 47 HOH HOH . X 6 HOH C 51 451 225 HOH HOH . X 6 HOH C 52 452 501 HOH HOH . X 6 HOH C 53 453 187 HOH HOH . X 6 HOH C 54 454 93 HOH HOH . X 6 HOH C 55 455 6 HOH HOH . X 6 HOH C 56 456 88 HOH HOH . X 6 HOH C 57 457 37 HOH HOH . X 6 HOH C 58 458 197 HOH HOH . X 6 HOH C 59 459 51 HOH HOH . X 6 HOH C 60 460 468 HOH HOH . X 6 HOH C 61 461 76 HOH HOH . X 6 HOH C 62 462 364 HOH HOH . X 6 HOH C 63 463 145 HOH HOH . X 6 HOH C 64 464 499 HOH HOH . X 6 HOH C 65 465 74 HOH HOH . X 6 HOH C 66 466 122 HOH HOH . X 6 HOH C 67 467 113 HOH HOH . X 6 HOH C 68 468 427 HOH HOH . X 6 HOH C 69 469 331 HOH HOH . X 6 HOH C 70 470 100 HOH HOH . X 6 HOH C 71 471 442 HOH HOH . X 6 HOH C 72 472 479 HOH HOH . X 6 HOH C 73 473 410 HOH HOH . X 6 HOH C 74 474 421 HOH HOH . X 6 HOH C 75 475 420 HOH HOH . X 6 HOH C 76 476 485 HOH HOH . X 6 HOH C 77 477 271 HOH HOH . X 6 HOH C 78 478 87 HOH HOH . X 6 HOH C 79 479 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . R 2 84.186 149.56 182.897 1 56.56 ? C1 EDO 305 C 1 HETATM 2 O O1 EDO . . . R 2 84.589 148.227 183.237 1 56.35 ? O1 EDO 305 C 1 HETATM 3 C C2 EDO . . . R 2 84.754 149.932 181.527 1 56.38 ? C2 EDO 305 C 1 HETATM 4 O O2 EDO . . . R 2 83.754 149.701 180.529 1 52.18 ? O2 EDO 305 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #