data_6DZD # _model_server_result.job_id uZksAhJP8gDzGdLgrk7ngw _model_server_result.datetime_utc '2024-11-23 12:46:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dzd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 6DZD # _exptl.entry_id 6DZD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DZD _cell.length_a 42.567 _cell.length_b 69.464 _cell.length_c 179.589 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 189 A CYS 189 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A SG CYS 190 A CYS 190 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc3 A O ASP 210 A ASP 210 1_555 D K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc4 A O PHE 213 A PHE 213 1_555 D K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc5 A SG CYS 249 A CYS 249 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc6 A SG CYS 252 A CYS 252 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc7 D K K . A K 302 1_555 B O ASP 210 B ASP 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc8 D K K . A K 302 1_555 B O PHE 213 B PHE 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc9 D K K . A K 302 1_555 I O HOH . B HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc10 B OE1 GLU 88 B GLU 88 1_555 G NA NA . B NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc11 B OE2 GLU 88 B GLU 88 1_555 G NA NA . B NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc12 B O ARG 170 B ARG 170 1_555 G NA NA . B NA 302 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc13 B SG CYS 189 B CYS 189 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc14 B SG CYS 190 B CYS 190 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc15 B SG CYS 249 B CYS 249 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc16 B SG CYS 252 B CYS 252 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc17 G NA NA . B NA 302 1_555 I O HOH . B HOH 413 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 3.001 ? metalc ? metalc18 G NA NA . B NA 302 1_555 I O HOH . B HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc19 G NA NA . B NA 302 1_555 I O HOH . B HOH 450 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6DZD _atom_sites.fract_transf_matrix[1][1] 0.023492 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 2 ZN ZN . D 3 K A 1 302 1 K K . E 4 CL A 1 303 1 CL CL . F 2 ZN B 1 301 1 ZN ZN . G 5 NA B 1 302 1 NA NA . H 6 HOH A 1 401 100 HOH HOH . H 6 HOH A 2 402 89 HOH HOH . H 6 HOH A 3 403 55 HOH HOH . H 6 HOH A 4 404 77 HOH HOH . H 6 HOH A 5 405 83 HOH HOH . H 6 HOH A 6 406 120 HOH HOH . H 6 HOH A 7 407 56 HOH HOH . H 6 HOH A 8 408 104 HOH HOH . H 6 HOH A 9 409 82 HOH HOH . H 6 HOH A 10 410 31 HOH HOH . H 6 HOH A 11 411 117 HOH HOH . H 6 HOH A 12 412 2 HOH HOH . H 6 HOH A 13 413 66 HOH HOH . H 6 HOH A 14 414 72 HOH HOH . H 6 HOH A 15 415 13 HOH HOH . H 6 HOH A 16 416 152 HOH HOH . H 6 HOH A 17 417 157 HOH HOH . H 6 HOH A 18 418 37 HOH HOH . H 6 HOH A 19 419 101 HOH HOH . H 6 HOH A 20 420 114 HOH HOH . H 6 HOH A 21 421 140 HOH HOH . H 6 HOH A 22 422 43 HOH HOH . H 6 HOH A 23 423 129 HOH HOH . H 6 HOH A 24 424 139 HOH HOH . H 6 HOH A 25 425 59 HOH HOH . H 6 HOH A 26 426 30 HOH HOH . H 6 HOH A 27 427 4 HOH HOH . H 6 HOH A 28 428 103 HOH HOH . H 6 HOH A 29 429 99 HOH HOH . H 6 HOH A 30 430 26 HOH HOH . H 6 HOH A 31 431 97 HOH HOH . H 6 HOH A 32 432 119 HOH HOH . H 6 HOH A 33 433 145 HOH HOH . H 6 HOH A 34 434 19 HOH HOH . H 6 HOH A 35 435 33 HOH HOH . H 6 HOH A 36 436 41 HOH HOH . H 6 HOH A 37 437 24 HOH HOH . H 6 HOH A 38 438 60 HOH HOH . H 6 HOH A 39 439 105 HOH HOH . H 6 HOH A 40 440 54 HOH HOH . H 6 HOH A 41 441 133 HOH HOH . H 6 HOH A 42 442 128 HOH HOH . H 6 HOH A 43 443 44 HOH HOH . H 6 HOH A 44 444 153 HOH HOH . H 6 HOH A 45 445 118 HOH HOH . H 6 HOH A 46 446 22 HOH HOH . H 6 HOH A 47 447 14 HOH HOH . H 6 HOH A 48 448 96 HOH HOH . H 6 HOH A 49 449 11 HOH HOH . H 6 HOH A 50 450 131 HOH HOH . H 6 HOH A 51 451 10 HOH HOH . H 6 HOH A 52 452 25 HOH HOH . H 6 HOH A 53 453 58 HOH HOH . H 6 HOH A 54 454 160 HOH HOH . H 6 HOH A 55 455 18 HOH HOH . H 6 HOH A 56 456 81 HOH HOH . H 6 HOH A 57 457 87 HOH HOH . H 6 HOH A 58 458 32 HOH HOH . H 6 HOH A 59 459 107 HOH HOH . H 6 HOH A 60 460 135 HOH HOH . H 6 HOH A 61 461 67 HOH HOH . H 6 HOH A 62 462 47 HOH HOH . H 6 HOH A 63 463 111 HOH HOH . H 6 HOH A 64 464 127 HOH HOH . H 6 HOH A 65 465 124 HOH HOH . H 6 HOH A 66 466 162 HOH HOH . H 6 HOH A 67 467 163 HOH HOH . H 6 HOH A 68 468 161 HOH HOH . H 6 HOH A 69 469 95 HOH HOH . H 6 HOH A 70 470 75 HOH HOH . H 6 HOH A 71 471 78 HOH HOH . H 6 HOH A 72 472 164 HOH HOH . H 6 HOH A 73 473 15 HOH HOH . H 6 HOH A 74 474 85 HOH HOH . H 6 HOH A 75 475 70 HOH HOH . H 6 HOH A 76 476 88 HOH HOH . H 6 HOH A 77 477 165 HOH HOH . H 6 HOH A 78 478 35 HOH HOH . H 6 HOH A 79 479 125 HOH HOH . H 6 HOH A 80 480 173 HOH HOH . H 6 HOH A 81 481 142 HOH HOH . H 6 HOH A 82 482 166 HOH HOH . H 6 HOH A 83 483 76 HOH HOH . H 6 HOH A 84 484 172 HOH HOH . I 6 HOH B 1 401 156 HOH HOH . I 6 HOH B 2 402 38 HOH HOH . I 6 HOH B 3 403 144 HOH HOH . I 6 HOH B 4 404 154 HOH HOH . I 6 HOH B 5 405 109 HOH HOH . I 6 HOH B 6 406 20 HOH HOH . I 6 HOH B 7 407 42 HOH HOH . I 6 HOH B 8 408 106 HOH HOH . I 6 HOH B 9 409 71 HOH HOH . I 6 HOH B 10 410 23 HOH HOH . I 6 HOH B 11 411 169 HOH HOH . I 6 HOH B 12 412 29 HOH HOH . I 6 HOH B 13 413 91 HOH HOH . I 6 HOH B 14 414 149 HOH HOH . I 6 HOH B 15 415 94 HOH HOH . I 6 HOH B 16 416 50 HOH HOH . I 6 HOH B 17 417 17 HOH HOH . I 6 HOH B 18 418 62 HOH HOH . I 6 HOH B 19 419 16 HOH HOH . I 6 HOH B 20 420 108 HOH HOH . I 6 HOH B 21 421 45 HOH HOH . I 6 HOH B 22 422 122 HOH HOH . I 6 HOH B 23 423 123 HOH HOH . I 6 HOH B 24 424 74 HOH HOH . I 6 HOH B 25 425 9 HOH HOH . I 6 HOH B 26 426 98 HOH HOH . I 6 HOH B 27 427 21 HOH HOH . I 6 HOH B 28 428 126 HOH HOH . I 6 HOH B 29 429 68 HOH HOH . I 6 HOH B 30 430 63 HOH HOH . I 6 HOH B 31 431 134 HOH HOH . I 6 HOH B 32 432 49 HOH HOH . I 6 HOH B 33 433 168 HOH HOH . I 6 HOH B 34 434 12 HOH HOH . I 6 HOH B 35 435 6 HOH HOH . I 6 HOH B 36 436 51 HOH HOH . I 6 HOH B 37 437 64 HOH HOH . I 6 HOH B 38 438 90 HOH HOH . I 6 HOH B 39 439 112 HOH HOH . I 6 HOH B 40 440 8 HOH HOH . I 6 HOH B 41 441 132 HOH HOH . I 6 HOH B 42 442 102 HOH HOH . I 6 HOH B 43 443 5 HOH HOH . I 6 HOH B 44 444 65 HOH HOH . I 6 HOH B 45 445 48 HOH HOH . I 6 HOH B 46 446 34 HOH HOH . I 6 HOH B 47 447 3 HOH HOH . I 6 HOH B 48 448 57 HOH HOH . I 6 HOH B 49 449 36 HOH HOH . I 6 HOH B 50 450 155 HOH HOH . I 6 HOH B 51 451 52 HOH HOH . I 6 HOH B 52 452 27 HOH HOH . I 6 HOH B 53 453 148 HOH HOH . I 6 HOH B 54 454 39 HOH HOH . I 6 HOH B 55 455 92 HOH HOH . I 6 HOH B 56 456 143 HOH HOH . I 6 HOH B 57 457 1 HOH HOH . I 6 HOH B 58 458 7 HOH HOH . I 6 HOH B 59 459 28 HOH HOH . I 6 HOH B 60 460 69 HOH HOH . I 6 HOH B 61 461 146 HOH HOH . I 6 HOH B 62 462 84 HOH HOH . I 6 HOH B 63 463 93 HOH HOH . I 6 HOH B 64 464 53 HOH HOH . I 6 HOH B 65 465 151 HOH HOH . I 6 HOH B 66 466 147 HOH HOH . I 6 HOH B 67 467 115 HOH HOH . I 6 HOH B 68 468 73 HOH HOH . I 6 HOH B 69 469 150 HOH HOH . I 6 HOH B 70 470 40 HOH HOH . I 6 HOH B 71 471 136 HOH HOH . I 6 HOH B 72 472 137 HOH HOH . I 6 HOH B 73 473 159 HOH HOH . I 6 HOH B 74 474 130 HOH HOH . I 6 HOH B 75 475 46 HOH HOH . I 6 HOH B 76 476 116 HOH HOH . I 6 HOH B 77 477 79 HOH HOH . I 6 HOH B 78 478 170 HOH HOH . I 6 HOH B 79 479 141 HOH HOH . I 6 HOH B 80 480 80 HOH HOH . I 6 HOH B 81 481 86 HOH HOH . I 6 HOH B 82 482 171 HOH HOH . I 6 HOH B 83 483 121 HOH HOH . I 6 HOH B 84 484 167 HOH HOH . I 6 HOH B 85 485 61 HOH HOH . I 6 HOH B 86 486 158 HOH HOH . I 6 HOH B 87 487 138 HOH HOH . I 6 HOH B 88 488 110 HOH HOH . I 6 HOH B 89 489 113 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 34.531 _atom_site.Cartn_y 32.901 _atom_site.Cartn_z 26.527 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 129 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #