data_6DZQ # _model_server_result.job_id PgGPJ-ehHUpCZWyMSz182A _model_server_result.datetime_utc '2025-01-25 08:29:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dzq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6DZQ # _exptl.entry_id 6DZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-hydroxy-6-methyl-4-oxo-4H-pyran-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6DZQ _cell.length_a 75.2 _cell.length_b 75.2 _cell.length_c 119.62 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 47 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc2 A OE2 GLU 74 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc3 A OD2 ASP 102 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc4 A OD1 ASP 102 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc5 A OE2 GLU 113 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc6 A O ILE 114 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D OAK HJP . A HJP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D OAL HJP . A HJP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc9 C MN MN . A MN 202 1_555 D OAF HJP . A HJP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc10 C MN MN . A MN 202 1_555 D OAL HJP . A HJP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc11 C MN MN . A MN 202 1_555 G O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc12 C MN MN . A MN 202 1_555 G O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? # _chem_comp.formula 'C7 H6 O5' _chem_comp.formula_weight 170.12 _chem_comp.id HJP _chem_comp.mon_nstd_flag . _chem_comp.name '3-hydroxy-6-methyl-4-oxo-4H-pyran-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAK CAH HJP doub 159 n n OAL CAI HJP sing 160 n n CAH CAI HJP sing 161 n n CAH CAG HJP sing 162 n n CAI CAD HJP doub 163 n n CAG CAB HJP doub 164 n n OAF CAE HJP doub 165 n n CAD CAE HJP sing 166 n n CAD OAC HJP sing 167 n n CAE OAJ HJP sing 168 n n CAB OAC HJP sing 169 n n CAB CAA HJP sing 170 n n OAJ H1 HJP sing 171 n n CAA H2 HJP sing 172 n n CAA H3 HJP sing 173 n n CAA H4 HJP sing 174 n n CAG H5 HJP sing 175 n n OAL H6 HJP sing 176 n n # _atom_sites.entry_id 6DZQ _atom_sites.fract_transf_matrix[1][1] 0.013298 _atom_sites.fract_transf_matrix[1][2] 0.007678 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 199 MN MN . C 2 MN A 1 202 200 MN MN . D 3 HJP A 1 203 201 HJP DRG . E 4 EDO A 1 204 202 EDO EDO . F 4 EDO A 1 205 203 EDO EDO . G 5 HOH A 1 301 214 HOH HOH . G 5 HOH A 2 302 204 HOH HOH . G 5 HOH A 3 303 205 HOH HOH . G 5 HOH A 4 304 215 HOH HOH . G 5 HOH A 5 305 213 HOH HOH . G 5 HOH A 6 306 212 HOH HOH . G 5 HOH A 7 307 211 HOH HOH . G 5 HOH A 8 308 206 HOH HOH . G 5 HOH A 9 309 208 HOH HOH . G 5 HOH A 10 310 209 HOH HOH . G 5 HOH A 11 311 210 HOH HOH . G 5 HOH A 12 312 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAF HJP . . . D 3 -17.399 15.756 14.82 1 36.95 ? OAF HJP 203 A 1 HETATM 2 C CAE HJP . . . D 3 -18.209 16.448 15.49 1 40.74 ? CAE HJP 203 A 1 HETATM 3 O OAJ HJP . . . D 3 -18.04 16.528 16.717 1 45.56 ? OAJ HJP 203 A 1 HETATM 4 C CAD HJP . . . D 3 -19.264 17.199 14.964 1 37.88 ? CAD HJP 203 A 1 HETATM 5 O OAC HJP . . . D 3 -19.942 17.916 15.927 1 34.76 ? OAC HJP 203 A 1 HETATM 6 C CAB HJP . . . D 3 -21.013 18.668 15.546 1 38.24 ? CAB HJP 203 A 1 HETATM 7 C CAA HJP . . . D 3 -21.691 19.325 16.617 1 39.84 ? CAA HJP 203 A 1 HETATM 8 C CAG HJP . . . D 3 -21.427 18.778 14.21 1 35.03 ? CAG HJP 203 A 1 HETATM 9 C CAH HJP . . . D 3 -20.768 18.076 13.204 1 36.54 ? CAH HJP 203 A 1 HETATM 10 O OAK HJP . . . D 3 -21.141 18.178 12.009 1 37.18 ? OAK HJP 203 A 1 HETATM 11 C CAI HJP . . . D 3 -19.645 17.323 13.613 1 35.19 ? CAI HJP 203 A 1 HETATM 12 O OAL HJP . . . D 3 -18.993 16.574 12.693 1 30.6 ? OAL HJP 203 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #