data_6DZS
#
_model_server_result.job_id            i11us9BF4iljm1CZ28ctdA 
_model_server_result.datetime_utc      '2025-01-02 20:51:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dzs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":500}' 
#
_entry.id    6DZS 
#
_exptl.entry_id    6DZS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.83 
_cell.angle_gamma         90 
_cell.entry_id            6DZS 
_cell.length_a            93.8 
_cell.length_b            110.32 
_cell.length_c            97.53 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DZS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     6DZS 
_atom_sites.fract_transf_matrix[1][1]    0.010661 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00034 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009065 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010258 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 500 500 NAP NAP . 
F 2 NAP B 1 500 500 NAP NAP . 
G 2 NAP C 1 500 500 NAP NAP . 
H 2 NAP D 1 500 500 NAP NAP . 
I 3 HOH A 1 601 90 HOH HOH . 
I 3 HOH A 2 602 25 HOH HOH . 
I 3 HOH A 3 603 45 HOH HOH . 
I 3 HOH A 4 604 31 HOH HOH . 
I 3 HOH A 5 605 54 HOH HOH . 
I 3 HOH A 6 606 11 HOH HOH . 
I 3 HOH A 7 607 36 HOH HOH . 
I 3 HOH A 8 608 55 HOH HOH . 
I 3 HOH A 9 609 86 HOH HOH . 
I 3 HOH A 10 610 3 HOH HOH . 
I 3 HOH A 11 611 41 HOH HOH . 
I 3 HOH A 12 612 66 HOH HOH . 
I 3 HOH A 13 613 67 HOH HOH . 
I 3 HOH A 14 614 69 HOH HOH . 
I 3 HOH A 15 615 70 HOH HOH . 
I 3 HOH A 16 616 94 HOH HOH . 
I 3 HOH A 17 617 71 HOH HOH . 
I 3 HOH A 18 618 32 HOH HOH . 
I 3 HOH A 19 619 65 HOH HOH . 
J 3 HOH B 1 601 95 HOH HOH . 
J 3 HOH B 2 602 13 HOH HOH . 
J 3 HOH B 3 603 37 HOH HOH . 
J 3 HOH B 4 604 72 HOH HOH . 
J 3 HOH B 5 605 10 HOH HOH . 
J 3 HOH B 6 606 93 HOH HOH . 
J 3 HOH B 7 607 44 HOH HOH . 
K 3 HOH C 1 601 91 HOH HOH . 
K 3 HOH C 2 602 75 HOH HOH . 
K 3 HOH C 3 603 78 HOH HOH . 
K 3 HOH C 4 604 15 HOH HOH . 
K 3 HOH C 5 605 21 HOH HOH . 
K 3 HOH C 6 606 76 HOH HOH . 
K 3 HOH C 7 607 29 HOH HOH . 
K 3 HOH C 8 608 77 HOH HOH . 
K 3 HOH C 9 609 74 HOH HOH . 
L 3 HOH D 1 601 23 HOH HOH . 
L 3 HOH D 2 602 81 HOH HOH . 
L 3 HOH D 3 603 28 HOH HOH . 
L 3 HOH D 4 604 83 HOH HOH . 
L 3 HOH D 5 605 82 HOH HOH . 
L 3 HOH D 6 606 80 HOH HOH . 
L 3 HOH D 7 607 84 HOH HOH . 
L 3 HOH D 8 608 88 HOH HOH . 
L 3 HOH D 9 609 87 HOH HOH . 
L 3 HOH D 10 610 79 HOH HOH . 
L 3 HOH D 11 611 92 HOH HOH . 
L 3 HOH D 12 612 9 HOH HOH . 
L 3 HOH D 13 613 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . F 2 13.582 20.622 -14.791 1 96.95 ? PA NAP 500 B 1 
HETATM 2 O O1A NAP . . . F 2 12.151 20.946 -15.002 1 96.09 ? O1A NAP 500 B 1 
HETATM 3 O O2A NAP . . . F 2 14.413 21.326 -15.858 1 96.47 ? O2A NAP 500 B 1 
HETATM 4 O O5B NAP . . . F 2 14.169 21.066 -13.302 1 97.33 ? O5B NAP 500 B 1 
HETATM 5 C C5B NAP . . . F 2 15.583 21.033 -13.015 1 98.24 ? C5B NAP 500 B 1 
HETATM 6 C C4B NAP . . . F 2 15.808 21.497 -11.593 1 99.23 ? C4B NAP 500 B 1 
HETATM 7 O O4B NAP . . . F 2 17.203 21.344 -11.249 1 99.71 ? O4B NAP 500 B 1 
HETATM 8 C C3B NAP . . . F 2 15.455 22.959 -11.323 1 99.3 ? C3B NAP 500 B 1 
HETATM 9 O O3B NAP . . . F 2 14.742 23.076 -10.093 1 99.21 ? O3B NAP 500 B 1 
HETATM 10 C C2B NAP . . . F 2 16.804 23.666 -11.212 1 99.34 ? C2B NAP 500 B 1 
HETATM 11 O O2B NAP . . . F 2 16.723 24.803 -10.326 1 99.75 ? O2B NAP 500 B 1 
HETATM 12 C C1B NAP . . . F 2 17.729 22.552 -10.73 1 98.84 ? C1B NAP 500 B 1 
HETATM 13 N N9A NAP . . . F 2 19.112 22.681 -11.192 1 96.63 ? N9A NAP 500 B 1 
HETATM 14 C C8A NAP . . . F 2 19.538 22.704 -12.493 1 95.57 ? C8A NAP 500 B 1 
HETATM 15 N N7A NAP . . . F 2 20.837 22.824 -12.622 1 95.13 ? N7A NAP 500 B 1 
HETATM 16 C C5A NAP . . . F 2 21.298 22.885 -11.323 1 95.33 ? C5A NAP 500 B 1 
HETATM 17 C C6A NAP . . . F 2 22.588 23.02 -10.774 1 95.34 ? C6A NAP 500 B 1 
HETATM 18 N N6A NAP . . . F 2 23.696 23.132 -11.511 1 95.8 ? N6A NAP 500 B 1 
HETATM 19 N N1A NAP . . . F 2 22.702 23.05 -9.429 1 94.75 ? N1A NAP 500 B 1 
HETATM 20 C C2A NAP . . . F 2 21.594 22.954 -8.688 1 94.83 ? C2A NAP 500 B 1 
HETATM 21 N N3A NAP . . . F 2 20.325 22.824 -9.088 1 95.34 ? N3A NAP 500 B 1 
HETATM 22 C C4A NAP . . . F 2 20.244 22.796 -10.421 1 95.68 ? C4A NAP 500 B 1 
HETATM 23 O O3 NAP . . . F 2 13.821 19.054 -14.959 1 98.02 ? O3 NAP 500 B 1 
HETATM 24 P PN NAP . . . F 2 12.927 17.744 -14.746 1 96.66 ? PN NAP 500 B 1 
HETATM 25 O O1N NAP . . . F 2 12.003 17.614 -15.894 1 96.48 ? O1N NAP 500 B 1 
HETATM 26 O O2N NAP . . . F 2 12.373 17.758 -13.373 1 96.39 ? O2N NAP 500 B 1 
HETATM 27 O O5D NAP . . . F 2 14.036 16.602 -14.877 1 96.71 ? O5D NAP 500 B 1 
HETATM 28 C C5D NAP . . . F 2 14.869 16.256 -13.744 1 96.62 ? C5D NAP 500 B 1 
HETATM 29 C C4D NAP . . . F 2 15.54 14.929 -13.994 1 96.87 ? C4D NAP 500 B 1 
HETATM 30 O O4D NAP . . . F 2 14.536 13.897 -14.113 1 97.14 ? O4D NAP 500 B 1 
HETATM 31 C C3D NAP . . . F 2 16.398 14.85 -15.257 1 97.34 ? C3D NAP 500 B 1 
HETATM 32 O O3D NAP . . . F 2 17.584 14.098 -15.02 1 97.14 ? O3D NAP 500 B 1 
HETATM 33 C C2D NAP . . . F 2 15.472 14.147 -16.253 1 97.73 ? C2D NAP 500 B 1 
HETATM 34 O O2D NAP . . . F 2 16.218 13.418 -17.22 1 97.25 ? O2D NAP 500 B 1 
HETATM 35 C C1D NAP . . . F 2 14.697 13.213 -15.328 1 97.97 ? C1D NAP 500 B 1 
HETATM 36 N N1N NAP . . . F 2 13.296 12.792 -15.842 1 98.85 ? N1N NAP 500 B 1 
HETATM 37 C C2N NAP . . . F 2 12.425 13.777 -16.127 1 99.27 ? C2N NAP 500 B 1 
HETATM 38 C C3N NAP . . . F 2 11.153 13.477 -16.575 1 100.09 ? C3N NAP 500 B 1 
HETATM 39 C C7N NAP . . . F 2 10.15 14.547 -16.888 1 100.8 ? C7N NAP 500 B 1 
HETATM 40 O O7N NAP . . . F 2 9.027 14.225 -17.304 1 100.41 ? O7N NAP 500 B 1 
HETATM 41 N N7N NAP . . . F 2 10.505 15.802 -16.715 1 101.3 ? N7N NAP 500 B 1 
HETATM 42 C C4N NAP . . . F 2 10.798 12.143 -16.725 1 99.99 ? C4N NAP 500 B 1 
HETATM 43 C C5N NAP . . . F 2 11.708 11.148 -16.426 1 99.6 ? C5N NAP 500 B 1 
HETATM 44 C C6N NAP . . . F 2 12.963 11.493 -15.982 1 99.14 ? C6N NAP 500 B 1 
HETATM 45 P P2B NAP . . . F 2 16.247 26.253 -10.872 1 100.91 ? P2B NAP 500 B 1 
HETATM 46 O O1X NAP . . . F 2 14.777 26.28 -11.153 1 101.45 ? O1X NAP 500 B 1 
HETATM 47 O O2X NAP . . . F 2 16.655 27.266 -9.809 1 100.78 ? O2X NAP 500 B 1 
HETATM 48 O O3X NAP . . . F 2 17.093 26.535 -12.115 1 102.18 ? O3X NAP 500 B 1 
HETATM 49 H H51A NAP . . . F 2 16.117 21.664 -13.724 1 117.89 ? H51A NAP 500 B 1 
HETATM 50 H H52A NAP . . . F 2 15.966 20.025 -13.166 1 117.89 ? H52A NAP 500 B 1 
HETATM 51 H H4B NAP . . . F 2 15.322 20.833 -10.88 1 119.07 ? H4B NAP 500 B 1 
HETATM 52 H H3B NAP . . . F 2 14.855 23.33 -12.152 1 119.16 ? H3B NAP 500 B 1 
HETATM 53 H HO3A NAP . . . F 2 15.235 23.729 -9.53 1 119.05 ? HO3A NAP 500 B 1 
HETATM 54 H H2B NAP . . . F 2 17.12 23.998 -12.2 1 119.21 ? H2B NAP 500 B 1 
HETATM 55 H H1B NAP . . . F 2 17.75 22.481 -9.643 1 118.61 ? H1B NAP 500 B 1 
HETATM 56 H H8A NAP . . . F 2 18.855 22.629 -13.338 1 114.68 ? H8A NAP 500 B 1 
HETATM 57 H H61A NAP . . . F 2 23.637 23.122 -12.524 1 114.96 ? H61A NAP 500 B 1 
HETATM 58 H H62A NAP . . . F 2 24.6 23.227 -11.059 1 114.96 ? H62A NAP 500 B 1 
HETATM 59 H H2A NAP . . . F 2 21.759 22.987 -7.612 1 113.79 ? H2A NAP 500 B 1 
HETATM 60 H H51N NAP . . . F 2 14.272 16.197 -12.835 1 115.94 ? H51N NAP 500 B 1 
HETATM 61 H H52N NAP . . . F 2 15.626 17.022 -13.579 1 115.94 ? H52N NAP 500 B 1 
HETATM 62 H H4D NAP . . . F 2 16.107 14.616 -13.118 1 116.25 ? H4D NAP 500 B 1 
HETATM 63 H H3D NAP . . . F 2 16.687 15.827 -15.64 1 116.81 ? H3D NAP 500 B 1 
HETATM 64 H HO3N NAP . . . F 2 17.841 13.674 -15.88 1 116.57 ? HO3N NAP 500 B 1 
HETATM 65 H H2D NAP . . . F 2 14.832 14.822 -16.821 1 117.28 ? H2D NAP 500 B 1 
HETATM 66 H HO2N NAP . . . F 2 16.136 13.808 -18.13 1 116.7 ? HO2N NAP 500 B 1 
HETATM 67 H H1D NAP . . . F 2 15.202 12.266 -15.141 1 117.56 ? H1D NAP 500 B 1 
HETATM 68 H H2N NAP . . . F 2 12.742 14.811 -15.997 1 119.12 ? H2N NAP 500 B 1 
HETATM 69 H H71N NAP . . . F 2 11.439 16.01 -16.377 1 121.56 ? H71N NAP 500 B 1 
HETATM 70 H H72N NAP . . . F 2 9.838 16.538 -16.922 1 121.56 ? H72N NAP 500 B 1 
HETATM 71 H H4N NAP . . . F 2 9.81 11.848 -17.076 1 119.99 ? H4N NAP 500 B 1 
HETATM 72 H H5N NAP . . . F 2 11.439 10.099 -16.54 1 119.52 ? H5N NAP 500 B 1 
HETATM 73 H H6N NAP . . . F 2 13.699 10.728 -15.74 1 118.97 ? H6N NAP 500 B 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    71 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           73 
#