data_6DZS
#
_model_server_result.job_id            0KhTgVX7DWNrX0L3yAuX2A 
_model_server_result.datetime_utc      '2025-01-02 20:53:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6dzs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":500}' 
#
_entry.id    6DZS 
#
_exptl.entry_id    6DZS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.83 
_cell.angle_gamma         90 
_cell.entry_id            6DZS 
_cell.length_a            93.8 
_cell.length_b            110.32 
_cell.length_c            97.53 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6DZS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     6DZS 
_atom_sites.fract_transf_matrix[1][1]    0.010661 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00034 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009065 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010258 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 500 500 NAP NAP . 
F 2 NAP B 1 500 500 NAP NAP . 
G 2 NAP C 1 500 500 NAP NAP . 
H 2 NAP D 1 500 500 NAP NAP . 
I 3 HOH A 1 601 90 HOH HOH . 
I 3 HOH A 2 602 25 HOH HOH . 
I 3 HOH A 3 603 45 HOH HOH . 
I 3 HOH A 4 604 31 HOH HOH . 
I 3 HOH A 5 605 54 HOH HOH . 
I 3 HOH A 6 606 11 HOH HOH . 
I 3 HOH A 7 607 36 HOH HOH . 
I 3 HOH A 8 608 55 HOH HOH . 
I 3 HOH A 9 609 86 HOH HOH . 
I 3 HOH A 10 610 3 HOH HOH . 
I 3 HOH A 11 611 41 HOH HOH . 
I 3 HOH A 12 612 66 HOH HOH . 
I 3 HOH A 13 613 67 HOH HOH . 
I 3 HOH A 14 614 69 HOH HOH . 
I 3 HOH A 15 615 70 HOH HOH . 
I 3 HOH A 16 616 94 HOH HOH . 
I 3 HOH A 17 617 71 HOH HOH . 
I 3 HOH A 18 618 32 HOH HOH . 
I 3 HOH A 19 619 65 HOH HOH . 
J 3 HOH B 1 601 95 HOH HOH . 
J 3 HOH B 2 602 13 HOH HOH . 
J 3 HOH B 3 603 37 HOH HOH . 
J 3 HOH B 4 604 72 HOH HOH . 
J 3 HOH B 5 605 10 HOH HOH . 
J 3 HOH B 6 606 93 HOH HOH . 
J 3 HOH B 7 607 44 HOH HOH . 
K 3 HOH C 1 601 91 HOH HOH . 
K 3 HOH C 2 602 75 HOH HOH . 
K 3 HOH C 3 603 78 HOH HOH . 
K 3 HOH C 4 604 15 HOH HOH . 
K 3 HOH C 5 605 21 HOH HOH . 
K 3 HOH C 6 606 76 HOH HOH . 
K 3 HOH C 7 607 29 HOH HOH . 
K 3 HOH C 8 608 77 HOH HOH . 
K 3 HOH C 9 609 74 HOH HOH . 
L 3 HOH D 1 601 23 HOH HOH . 
L 3 HOH D 2 602 81 HOH HOH . 
L 3 HOH D 3 603 28 HOH HOH . 
L 3 HOH D 4 604 83 HOH HOH . 
L 3 HOH D 5 605 82 HOH HOH . 
L 3 HOH D 6 606 80 HOH HOH . 
L 3 HOH D 7 607 84 HOH HOH . 
L 3 HOH D 8 608 88 HOH HOH . 
L 3 HOH D 9 609 87 HOH HOH . 
L 3 HOH D 10 610 79 HOH HOH . 
L 3 HOH D 11 611 92 HOH HOH . 
L 3 HOH D 12 612 9 HOH HOH . 
L 3 HOH D 13 613 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . H 2 -37.536 28.149 31.738 1 77.05 ? PA NAP 500 D 1 
HETATM 2 O O1A NAP . . . H 2 -36.064 28.188 31.892 1 76.83 ? O1A NAP 500 D 1 
HETATM 3 O O2A NAP . . . H 2 -38.183 28.971 32.845 1 75.61 ? O2A NAP 500 D 1 
HETATM 4 O O5B NAP . . . H 2 -38.047 28.738 30.281 1 77.19 ? O5B NAP 500 D 1 
HETATM 5 C C5B NAP . . . H 2 -39.449 28.898 29.994 1 77.87 ? C5B NAP 500 D 1 
HETATM 6 C C4B NAP . . . H 2 -39.586 29.278 28.538 1 79.09 ? C4B NAP 500 D 1 
HETATM 7 O O4B NAP . . . H 2 -40.984 29.442 28.207 1 79.5 ? O4B NAP 500 D 1 
HETATM 8 C C3B NAP . . . H 2 -38.896 30.586 28.147 1 80.3 ? C3B NAP 500 D 1 
HETATM 9 O O3B NAP . . . H 2 -38.363 30.493 26.83 1 80.94 ? O3B NAP 500 D 1 
HETATM 10 C C2B NAP . . . H 2 -40.037 31.598 28.207 1 80.55 ? C2B NAP 500 D 1 
HETATM 11 O O2B NAP . . . H 2 -39.78 32.76 27.391 1 81.01 ? O2B NAP 500 D 1 
HETATM 12 C C1B NAP . . . H 2 -41.23 30.759 27.752 1 80.3 ? C1B NAP 500 D 1 
HETATM 13 N N9A NAP . . . H 2 -42.516 31.204 28.288 1 80.07 ? N9A NAP 500 D 1 
HETATM 14 C C8A NAP . . . H 2 -42.882 31.283 29.604 1 79.4 ? C8A NAP 500 D 1 
HETATM 15 N N7A NAP . . . H 2 -44.09 31.76 29.797 1 78.79 ? N7A NAP 500 D 1 
HETATM 16 C C5A NAP . . . H 2 -44.548 32.011 28.515 1 79.31 ? C5A NAP 500 D 1 
HETATM 17 C C6A NAP . . . H 2 -45.758 32.547 28.028 1 79.43 ? C6A NAP 500 D 1 
HETATM 18 N N6A NAP . . . H 2 -46.759 32.952 28.812 1 79.28 ? N6A NAP 500 D 1 
HETATM 19 N N1A NAP . . . H 2 -45.896 32.672 26.69 1 79.79 ? N1A NAP 500 D 1 
HETATM 20 C C2A NAP . . . H 2 -44.887 32.29 25.901 1 79.8 ? C2A NAP 500 D 1 
HETATM 21 N N3A NAP . . . H 2 -43.702 31.778 26.243 1 80 ? N3A NAP 500 D 1 
HETATM 22 C C4A NAP . . . H 2 -43.595 31.666 27.57 1 79.89 ? C4A NAP 500 D 1 
HETATM 23 O O3 NAP . . . H 2 -38.064 26.651 31.887 1 78.97 ? O3 NAP 500 D 1 
HETATM 24 P PN NAP . . . H 2 -37.455 25.196 31.622 1 79.27 ? PN NAP 500 D 1 
HETATM 25 O O1N NAP . . . H 2 -36.479 24.879 32.687 1 79.62 ? O1N NAP 500 D 1 
HETATM 26 O O2N NAP . . . H 2 -37.036 25.1 30.205 1 79.38 ? O2N NAP 500 D 1 
HETATM 27 O O5D NAP . . . H 2 -38.741 24.286 31.861 1 79.57 ? O5D NAP 500 D 1 
HETATM 28 C C5D NAP . . . H 2 -39.71 24.13 30.8 1 80.01 ? C5D NAP 500 D 1 
HETATM 29 C C4D NAP . . . H 2 -40.771 23.166 31.261 1 80.17 ? C4D NAP 500 D 1 
HETATM 30 O O4D NAP . . . H 2 -40.161 21.889 31.552 1 80.63 ? O4D NAP 500 D 1 
HETATM 31 C C3D NAP . . . H 2 -41.541 23.582 32.517 1 80.19 ? C3D NAP 500 D 1 
HETATM 32 O O3D NAP . . . H 2 -42.935 23.345 32.345 1 81.04 ? O3D NAP 500 D 1 
HETATM 33 C C2D NAP . . . H 2 -40.957 22.676 33.602 1 80 ? C2D NAP 500 D 1 
HETATM 34 O O2D NAP . . . H 2 -41.916 22.366 34.606 1 80.39 ? O2D NAP 500 D 1 
HETATM 35 C C1D NAP . . . H 2 -40.625 21.431 32.791 1 80.14 ? C1D NAP 500 D 1 
HETATM 36 N N1N NAP . . . H 2 -39.547 20.526 33.408 1 79.9 ? N1N NAP 500 D 1 
HETATM 37 C C2N NAP . . . H 2 -38.328 21.075 33.548 1 80.27 ? C2N NAP 500 D 1 
HETATM 38 C C3N NAP . . . H 2 -37.288 20.34 34.082 1 80 ? C3N NAP 500 D 1 
HETATM 39 C C7N NAP . . . H 2 -35.921 20.933 34.227 1 80.18 ? C7N NAP 500 D 1 
HETATM 40 O O7N NAP . . . H 2 -35.008 20.243 34.69 1 80.45 ? O7N NAP 500 D 1 
HETATM 41 N N7N NAP . . . H 2 -35.74 22.179 33.843 1 80.17 ? N7N NAP 500 D 1 
HETATM 42 C C4N NAP . . . H 2 -37.533 19.032 34.479 1 79.12 ? C4N NAP 500 D 1 
HETATM 43 C C5N NAP . . . H 2 -38.794 18.489 34.327 1 78.7 ? C5N NAP 500 D 1 
HETATM 44 C C6N NAP . . . H 2 -39.797 19.255 33.782 1 79.07 ? C6N NAP 500 D 1 
HETATM 45 P P2B NAP . . . H 2 -38.808 33.943 27.922 1 82.46 ? P2B NAP 500 D 1 
HETATM 46 O O1X NAP . . . H 2 -37.4 33.463 28.04 1 82.94 ? O1X NAP 500 D 1 
HETATM 47 O O2X NAP . . . H 2 -38.944 35.099 26.925 1 82.65 ? O2X NAP 500 D 1 
HETATM 48 O O3X NAP . . . H 2 -39.385 34.4 29.263 1 81.97 ? O3X NAP 500 D 1 
HETATM 49 H H51A NAP . . . H 2 -39.879 29.657 30.645 1 93.45 ? H51A NAP 500 D 1 
HETATM 50 H H52A NAP . . . H 2 -39.984 27.976 30.216 1 93.45 ? H52A NAP 500 D 1 
HETATM 51 H H4B NAP . . . H 2 -39.291 28.459 27.884 1 94.91 ? H4B NAP 500 D 1 
HETATM 52 H H3B NAP . . . H 2 -38.092 30.807 28.847 1 96.36 ? H3B NAP 500 D 1 
HETATM 53 H HO3A NAP . . . H 2 -38.684 31.288 26.328 1 97.13 ? HO3A NAP 500 D 1 
HETATM 54 H H2B NAP . . . H 2 -40.173 31.92 29.238 1 96.66 ? H2B NAP 500 D 1 
HETATM 55 H H1B NAP . . . H 2 -41.327 30.734 26.668 1 96.37 ? H1B NAP 500 D 1 
HETATM 56 H H8A NAP . . . H 2 -42.224 30.976 30.416 1 95.27 ? H8A NAP 500 D 1 
HETATM 57 H H61A NAP . . . H 2 -46.675 32.883 29.821 1 95.14 ? H61A NAP 500 D 1 
HETATM 58 H H62A NAP . . . H 2 -47.606 33.33 28.401 1 95.14 ? H62A NAP 500 D 1 
HETATM 59 H H2A NAP . . . H 2 -45.068 32.418 24.835 1 95.75 ? H2A NAP 500 D 1 
HETATM 60 H H51N NAP . . . H 2 -39.236 23.755 29.895 1 96.01 ? H51N NAP 500 D 1 
HETATM 61 H H52N NAP . . . H 2 -40.165 25.088 30.548 1 96.01 ? H52N NAP 500 D 1 
HETATM 62 H H4D NAP . . . H 2 -41.456 22.928 30.448 1 96.2 ? H4D NAP 500 D 1 
HETATM 63 H H3D NAP . . . H 2 -41.391 24.628 32.782 1 96.23 ? H3D NAP 500 D 1 
HETATM 64 H HO3N NAP . . . H 2 -43.29 24.081 31.781 1 97.25 ? HO3N NAP 500 D 1 
HETATM 65 H H2D NAP . . . H 2 -40.107 23.115 34.124 1 96 ? H2D NAP 500 D 1 
HETATM 66 H HO2N NAP . . . H 2 -42.845 22.548 34.306 1 96.47 ? HO2N NAP 500 D 1 
HETATM 67 H H1D NAP . . . H 2 -41.47 20.762 32.637 1 96.16 ? H1D NAP 500 D 1 
HETATM 68 H H2N NAP . . . H 2 -38.178 22.107 33.233 1 96.32 ? H2N NAP 500 D 1 
HETATM 69 H H71N NAP . . . H 2 -36.524 22.699 33.462 1 96.2 ? H71N NAP 500 D 1 
HETATM 70 H H72N NAP . . . H 2 -34.819 22.596 33.934 1 96.2 ? H72N NAP 500 D 1 
HETATM 71 H H4N NAP . . . H 2 -36.753 18.408 34.912 1 94.94 ? H4N NAP 500 D 1 
HETATM 72 H H5N NAP . . . H 2 -38.995 17.465 34.636 1 94.44 ? H5N NAP 500 D 1 
HETATM 73 H H6N NAP . . . H 2 -40.798 18.85 33.646 1 94.88 ? H6N NAP 500 D 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           230 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           73 
#