data_6DZW # _model_server_result.job_id MfuNDV6DcDFOU29yFfLbEg _model_server_result.datetime_utc '2024-11-14 19:08:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dzw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 6DZW # _exptl.entry_id 6DZW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 329.365 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Paroxetine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 B 1 NAG A 702 NAG 5 n E NAG 2 B 2 NAG A 703 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 122 A CYS 200 1_555 A SG CYS 131 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 22 V CYS 37 1_555 B SG CYS 96 V CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 157 V CYS 172 1_555 B SG CYS 222 V CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 C SG CYS 22 H CYS 41 1_555 C SG CYS 96 H CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 D SG CYS 23 L CYS 43 1_555 D SG CYS 92 L CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 130 A ASN 208 1_555 E C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale2 E O4 NAG . B NAG 1 1_555 E C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C19 H20 F N O3' _chem_comp.formula_weight 329.365 _chem_comp.id 8PR _chem_comp.mon_nstd_flag . _chem_comp.name Paroxetine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3S,4R)-3-[(1,3-benzodioxol-5-yloxy)methyl]-4-(4-fluorophenyl)piperidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FAA CAR 8PR sing 1 n n CAR CAB 8PR doub 2 n y CAB CAE 8PR sing 3 n y CAB HAB 8PR sing 4 n n CAR CAC 8PR sing 5 n y CAC CAF 8PR doub 6 n y CAC HAC 8PR sing 7 n n CAS CAD 8PR doub 8 n y CAD CAG 8PR sing 9 n y CAD HAD 8PR sing 10 n n CAE CAT 8PR doub 11 n y CAE HAE 8PR sing 12 n n CAF CAT 8PR sing 13 n y CAF HAF 8PR sing 14 n n CAU CAG 8PR doub 15 n y CAG HAG 8PR sing 16 n n CAH CAS 8PR sing 17 n y CAH CAV 8PR doub 18 n y CAH HAH 8PR sing 19 n n CAJ CAI 8PR sing 20 n n CAI NAN 8PR sing 21 n n CAI HAI 8PR sing 22 n n CAI HAIA 8PR sing 23 n n CAJ CAX 8PR sing 24 n n CAJ HAJ 8PR sing 25 n n CAJ HAJA 8PR sing 26 n n CAW CAK 8PR sing 27 n n NAN CAK 8PR sing 28 n n CAK HAK 8PR sing 29 n n CAK HAKA 8PR sing 30 n n OAQ CAL 8PR sing 31 n n OAP CAL 8PR sing 32 n n CAL HAL 8PR sing 33 n n CAL HALA 8PR sing 34 n n CAW CAM 8PR sing 35 n n CAM OAO 8PR sing 36 n n CAM HAM 8PR sing 37 n n CAM HAMA 8PR sing 38 n n NAN HNAN 8PR sing 39 n n OAO CAS 8PR sing 40 n n CAU OAP 8PR sing 41 n n CAV OAQ 8PR sing 42 n n CAT CAX 8PR sing 43 n n CAV CAU 8PR sing 44 n y CAX CAW 8PR sing 45 n n CAW HAW 8PR sing 46 n n CAX HAX 8PR sing 47 n n # _atom_sites.entry_id 6DZW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 8PR A 1 701 701 8PR 8PR . G 7 NAG A 1 704 704 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FAA 8PR . . . F 6 123.198 129.61 106.626 1 219.56 ? FAA 8PR 701 A 1 HETATM 2 C CAB 8PR . . . F 6 125.386 128.833 106.486 1 219.56 ? CAB 8PR 701 A 1 HETATM 3 C CAC 8PR . . . F 6 124.938 131.091 105.788 1 219.56 ? CAC 8PR 701 A 1 HETATM 4 C CAD 8PR . . . F 6 130.344 133.653 108.89 1 219.56 ? CAD 8PR 701 A 1 HETATM 5 C CAE 8PR . . . F 6 126.726 129.003 106.177 1 219.56 ? CAE 8PR 701 A 1 HETATM 6 C CAF 8PR . . . F 6 126.279 131.261 105.479 1 219.56 ? CAF 8PR 701 A 1 HETATM 7 C CAG 8PR . . . F 6 130.567 134.929 109.387 1 219.56 ? CAG 8PR 701 A 1 HETATM 8 C CAH 8PR . . . F 6 129.491 134.588 106.843 1 219.56 ? CAH 8PR 701 A 1 HETATM 9 C CAI 8PR . . . F 6 130.51 128.873 104.177 1 219.56 ? CAI 8PR 701 A 1 HETATM 10 C CAJ 8PR . . . F 6 129.007 129.087 104.395 1 219.56 ? CAJ 8PR 701 A 1 HETATM 11 C CAK 8PR . . . F 6 130.964 129.751 106.478 1 219.56 ? CAK 8PR 701 A 1 HETATM 12 C CAL 8PR . . . F 6 129.696 138.114 107.806 1 219.56 ? CAL 8PR 701 A 1 HETATM 13 C CAM 8PR . . . F 6 129.266 131.207 107.604 1 219.56 ? CAM 8PR 701 A 1 HETATM 14 N NAN 8PR . . . F 6 131.242 128.665 105.479 1 219.56 ? NAN 8PR 701 A 1 HETATM 15 O OAO 8PR . . . F 6 129.475 132.366 106.851 1 219.56 ? OAO 8PR 701 A 1 HETATM 16 O OAP 8PR . . . F 6 130.36 137.438 108.844 1 219.56 ? OAP 8PR 701 A 1 HETATM 17 O OAQ 8PR . . . F 6 129.493 137.162 106.791 1 219.56 ? OAQ 8PR 701 A 1 HETATM 18 C CAR 8PR . . . F 6 124.494 129.877 106.291 1 219.56 ? CAR 8PR 701 A 1 HETATM 19 C CAS 8PR . . . F 6 129.808 133.485 107.621 1 219.56 ? CAS 8PR 701 A 1 HETATM 20 C CAT 8PR . . . F 6 127.17 130.218 105.675 1 219.56 ? CAT 8PR 701 A 1 HETATM 21 C CAU 8PR . . . F 6 130.246 136.048 108.602 1 219.56 ? CAU 8PR 701 A 1 HETATM 22 C CAV 8PR . . . F 6 129.715 135.879 107.346 1 219.56 ? CAV 8PR 701 A 1 HETATM 23 C CAW 8PR . . . F 6 129.46 129.962 106.702 1 219.56 ? CAW 8PR 701 A 1 HETATM 24 C CAX 8PR . . . F 6 128.722 130.169 105.4 1 219.56 ? CAX 8PR 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #