data_6DZY # _model_server_result.job_id fnUmbcwpa6Y412f5brp6Qw _model_server_result.datetime_utc '2025-01-05 05:46:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6dzy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":702}' # _entry.id 6DZY # _exptl.entry_id 6DZY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6DZY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DZY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 B 1 NAG A 703 NAG 5 n E NAG 2 B 2 NAG A 704 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 122 A CYS 200 1_555 A SG CYS 131 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 B SG CYS 22 H CYS 41 1_555 B SG CYS 96 H CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 23 L CYS 43 1_555 C SG CYS 92 L CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 22 V CYS 37 1_555 D SG CYS 96 V CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 D SG CYS 157 V CYS 172 1_555 D SG CYS 222 V CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 E O4 NAG . B NAG 1 1_555 E C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 245 n n C1B O1B LMT sing 246 n n C1B O5B LMT sing 247 n n C1B H1B LMT sing 248 n n C2B C3B LMT sing 249 n n C2B O2B LMT sing 250 n n C2B H2B LMT sing 251 n n C3B C4B LMT sing 252 n n C3B O3B LMT sing 253 n n C3B H3B LMT sing 254 n n C4B C5B LMT sing 255 n n C4B O4' LMT sing 256 n n C4B H4B LMT sing 257 n n C5B C6B LMT sing 258 n n C5B O5B LMT sing 259 n n C5B H5B LMT sing 260 n n C6B O6B LMT sing 261 n n C6B "H6'2" LMT sing 262 n n C6B "H6'1" LMT sing 263 n n O1B C4' LMT sing 264 n n O2B H2O1 LMT sing 265 n n O3B H3O1 LMT sing 266 n n O4' H4O1 LMT sing 267 n n O6B H6B LMT sing 268 n n C1' C2' LMT sing 269 n n C1' O1' LMT sing 270 n n C1' O5' LMT sing 271 n n C1' H1' LMT sing 272 n n C2' C3' LMT sing 273 n n C2' O2' LMT sing 274 n n C2' H2' LMT sing 275 n n C3' C4' LMT sing 276 n n C3' O3' LMT sing 277 n n C3' H3' LMT sing 278 n n C4' C5' LMT sing 279 n n C4' H4' LMT sing 280 n n C5' C6' LMT sing 281 n n C5' O5' LMT sing 282 n n C5' H5' LMT sing 283 n n C6' O6' LMT sing 284 n n C6' H6D LMT sing 285 n n C6' H6E LMT sing 286 n n O1' C1 LMT sing 287 n n O2' H2O2 LMT sing 288 n n O3' H3O2 LMT sing 289 n n O6' H6' LMT sing 290 n n C1 C2 LMT sing 291 n n C1 H12 LMT sing 292 n n C1 H11 LMT sing 293 n n C2 C3 LMT sing 294 n n C2 H22 LMT sing 295 n n C2 H21 LMT sing 296 n n C3 C4 LMT sing 297 n n C3 H32 LMT sing 298 n n C3 H31 LMT sing 299 n n C4 C5 LMT sing 300 n n C4 H42 LMT sing 301 n n C4 H41 LMT sing 302 n n C5 C6 LMT sing 303 n n C5 H52 LMT sing 304 n n C5 H51 LMT sing 305 n n C6 C7 LMT sing 306 n n C6 H62 LMT sing 307 n n C6 H61 LMT sing 308 n n C7 C8 LMT sing 309 n n C7 H72 LMT sing 310 n n C7 H71 LMT sing 311 n n C8 C9 LMT sing 312 n n C8 H82 LMT sing 313 n n C8 H81 LMT sing 314 n n C9 C10 LMT sing 315 n n C9 H92 LMT sing 316 n n C9 H91 LMT sing 317 n n C10 C11 LMT sing 318 n n C10 H102 LMT sing 319 n n C10 H101 LMT sing 320 n n C11 C12 LMT sing 321 n n C11 H112 LMT sing 322 n n C11 H111 LMT sing 323 n n C12 H123 LMT sing 324 n n C12 H122 LMT sing 325 n n C12 H121 LMT sing 326 n n # _atom_sites.entry_id 6DZY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 HJM A 1 701 701 HJM HJM . G 7 LMT A 1 702 702 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . G 7 146.973 157.578 173.284 1 212.06 ? C1B LMT 702 A 1 HETATM 2 C C2B LMT . . . G 7 148.028 156.445 173.061 1 212.06 ? C2B LMT 702 A 1 HETATM 3 C C3B LMT . . . G 7 147.738 155.182 173.921 1 212.06 ? C3B LMT 702 A 1 HETATM 4 C C4B LMT . . . G 7 146.259 155.028 174.4 1 212.06 ? C4B LMT 702 A 1 HETATM 5 C C5B LMT . . . G 7 145.301 155.774 173.447 1 212.06 ? C5B LMT 702 A 1 HETATM 6 C C6B LMT . . . G 7 143.86 155.62 173.927 1 212.06 ? C6B LMT 702 A 1 HETATM 7 O O1B LMT . . . G 7 147.155 158.622 172.369 1 212.06 ? O1B LMT 702 A 1 HETATM 8 O O2B LMT . . . G 7 148.059 156.115 171.727 1 212.06 ? O2B LMT 702 A 1 HETATM 9 O O3B LMT . . . G 7 148.626 155.085 174.963 1 212.06 ? O3B LMT 702 A 1 HETATM 10 O O4' LMT . . . G 7 145.906 153.696 174.453 1 212.06 ? O4' LMT 702 A 1 HETATM 11 O O5B LMT . . . G 7 145.617 157.156 173.256 1 212.06 ? O5B LMT 702 A 1 HETATM 12 O O6B LMT . . . G 7 143.675 154.391 174.508 1 212.06 ? O6B LMT 702 A 1 HETATM 13 C C1' LMT . . . G 7 147.456 162.027 171.98 1 212.06 ? C1' LMT 702 A 1 HETATM 14 C C2' LMT . . . G 7 147.454 161.097 170.745 1 212.06 ? C2' LMT 702 A 1 HETATM 15 C C3' LMT . . . G 7 148.504 159.961 170.929 1 212.06 ? C3' LMT 702 A 1 HETATM 16 C C4' LMT . . . G 7 148.396 159.3 172.322 1 212.06 ? C4' LMT 702 A 1 HETATM 17 C C5' LMT . . . G 7 148.406 160.434 173.386 1 212.06 ? C5' LMT 702 A 1 HETATM 18 C C6' LMT . . . G 7 149.45 160.25 174.452 1 212.06 ? C6' LMT 702 A 1 HETATM 19 O O2' LMT . . . G 7 146.21 160.532 170.654 1 212.06 ? O2' LMT 702 A 1 HETATM 20 O O3' LMT . . . G 7 149.767 160.441 170.747 1 212.06 ? O3' LMT 702 A 1 HETATM 21 O O5' LMT . . . G 7 148.574 161.704 172.798 1 212.06 ? O5' LMT 702 A 1 HETATM 22 O O6' LMT . . . G 7 150.623 160.006 173.784 1 212.06 ? O6' LMT 702 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 396 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 22 #