data_6E04 # _model_server_result.job_id rQE-YzGt1MrwwAg-9zV-Iw _model_server_result.datetime_utc '2024-11-16 10:52:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6E04 # _exptl.entry_id 6E04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 73.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-nitrosopropane _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6E04 _cell.length_a 90.47 _cell.length_b 90.47 _cell.length_c 45.341 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_475 -y-1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -180.94 156.698637 0 3 'crystal symmetry operation' 3_245 -x+y-3,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -226.175 -78.349318 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc2 B FE HEM . A HEM 201 1_555 C N1 XEM . A XEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? metalc ? metalc3 H NA NA . A NA 207 1_555 I O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc4 H NA NA . A NA 207 1_555 I O HOH . A HOH 402 2_475 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? # _chem_comp.formula 'C3 H7 N O' _chem_comp.formula_weight 73.094 _chem_comp.id XEM _chem_comp.mon_nstd_flag . _chem_comp.name 1-nitrosopropane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 XEM doub 449 n n N1 C3 XEM sing 450 n n C3 C2 XEM sing 451 n n C1 C2 XEM sing 452 n n C1 H1 XEM sing 453 n n C1 H2 XEM sing 454 n n C1 H3 XEM sing 455 n n C2 H4 XEM sing 456 n n C2 H5 XEM sing 457 n n C3 H6 XEM sing 458 n n C3 H7 XEM sing 459 n n # _atom_sites.entry_id 6E04 _atom_sites.fract_transf_matrix[1][1] 0.011053 _atom_sites.fract_transf_matrix[1][2] 0.006382 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 200 HEM HEM . C 3 XEM A 1 202 201 XEM VGE . D 4 SO4 A 1 203 202 SO4 SO4 . E 4 SO4 A 1 204 203 SO4 SO4 . F 4 SO4 A 1 205 204 SO4 SO4 . G 4 SO4 A 1 206 301 SO4 SO4 . H 5 NA A 1 207 1 NA NA . I 6 HOH A 1 301 96 HOH HOH . I 6 HOH A 2 302 67 HOH HOH . I 6 HOH A 3 303 103 HOH HOH . I 6 HOH A 4 304 66 HOH HOH . I 6 HOH A 5 305 101 HOH HOH . I 6 HOH A 6 306 32 HOH HOH . I 6 HOH A 7 307 104 HOH HOH . I 6 HOH A 8 308 117 HOH HOH . I 6 HOH A 9 309 4 HOH HOH . I 6 HOH A 10 310 44 HOH HOH . I 6 HOH A 11 311 23 HOH HOH . I 6 HOH A 12 312 73 HOH HOH . I 6 HOH A 13 313 144 HOH HOH . I 6 HOH A 14 314 10 HOH HOH . I 6 HOH A 15 315 125 HOH HOH . I 6 HOH A 16 316 20 HOH HOH . I 6 HOH A 17 317 112 HOH HOH . I 6 HOH A 18 318 123 HOH HOH . I 6 HOH A 19 319 61 HOH HOH . I 6 HOH A 20 320 43 HOH HOH . I 6 HOH A 21 321 105 HOH HOH . I 6 HOH A 22 322 109 HOH HOH . I 6 HOH A 23 323 26 HOH HOH . I 6 HOH A 24 324 57 HOH HOH . I 6 HOH A 25 325 126 HOH HOH . I 6 HOH A 26 326 75 HOH HOH . I 6 HOH A 27 327 145 HOH HOH . I 6 HOH A 28 328 85 HOH HOH . I 6 HOH A 29 329 128 HOH HOH . I 6 HOH A 30 330 42 HOH HOH . I 6 HOH A 31 331 76 HOH HOH . I 6 HOH A 32 332 6 HOH HOH . I 6 HOH A 33 333 69 HOH HOH . I 6 HOH A 34 334 148 HOH HOH . I 6 HOH A 35 335 79 HOH HOH . I 6 HOH A 36 336 49 HOH HOH . I 6 HOH A 37 337 3 HOH HOH . I 6 HOH A 38 338 87 HOH HOH . I 6 HOH A 39 339 2 HOH HOH . I 6 HOH A 40 340 143 HOH HOH . I 6 HOH A 41 341 100 HOH HOH . I 6 HOH A 42 342 37 HOH HOH . I 6 HOH A 43 343 119 HOH HOH . I 6 HOH A 44 344 63 HOH HOH . I 6 HOH A 45 345 127 HOH HOH . I 6 HOH A 46 346 38 HOH HOH . I 6 HOH A 47 347 93 HOH HOH . I 6 HOH A 48 348 14 HOH HOH . I 6 HOH A 49 349 55 HOH HOH . I 6 HOH A 50 350 40 HOH HOH . I 6 HOH A 51 351 129 HOH HOH . I 6 HOH A 52 352 16 HOH HOH . I 6 HOH A 53 353 54 HOH HOH . I 6 HOH A 54 354 60 HOH HOH . I 6 HOH A 55 355 27 HOH HOH . I 6 HOH A 56 356 70 HOH HOH . I 6 HOH A 57 357 17 HOH HOH . I 6 HOH A 58 358 59 HOH HOH . I 6 HOH A 59 359 107 HOH HOH . I 6 HOH A 60 360 56 HOH HOH . I 6 HOH A 61 361 29 HOH HOH . I 6 HOH A 62 362 39 HOH HOH . I 6 HOH A 63 363 52 HOH HOH . I 6 HOH A 64 364 77 HOH HOH . I 6 HOH A 65 365 102 HOH HOH . I 6 HOH A 66 366 135 HOH HOH . I 6 HOH A 67 367 64 HOH HOH . I 6 HOH A 68 368 8 HOH HOH . I 6 HOH A 69 369 46 HOH HOH . I 6 HOH A 70 370 33 HOH HOH . I 6 HOH A 71 371 47 HOH HOH . I 6 HOH A 72 372 80 HOH HOH . I 6 HOH A 73 373 18 HOH HOH . I 6 HOH A 74 374 130 HOH HOH . I 6 HOH A 75 375 11 HOH HOH . I 6 HOH A 76 376 24 HOH HOH . I 6 HOH A 77 377 139 HOH HOH . I 6 HOH A 78 378 116 HOH HOH . I 6 HOH A 79 379 106 HOH HOH . I 6 HOH A 80 380 21 HOH HOH . I 6 HOH A 81 381 72 HOH HOH . I 6 HOH A 82 382 78 HOH HOH . I 6 HOH A 83 383 35 HOH HOH . I 6 HOH A 84 384 124 HOH HOH . I 6 HOH A 85 385 9 HOH HOH . I 6 HOH A 86 386 81 HOH HOH . I 6 HOH A 87 387 118 HOH HOH . I 6 HOH A 88 388 99 HOH HOH . I 6 HOH A 89 389 114 HOH HOH . I 6 HOH A 90 390 115 HOH HOH . I 6 HOH A 91 391 141 HOH HOH . I 6 HOH A 92 392 12 HOH HOH . I 6 HOH A 93 393 15 HOH HOH . I 6 HOH A 94 394 136 HOH HOH . I 6 HOH A 95 395 58 HOH HOH . I 6 HOH A 96 396 111 HOH HOH . I 6 HOH A 97 397 53 HOH HOH . I 6 HOH A 98 398 5 HOH HOH . I 6 HOH A 99 399 122 HOH HOH . I 6 HOH A 100 400 7 HOH HOH . I 6 HOH A 101 401 48 HOH HOH . I 6 HOH A 102 402 154 HOH HOH . I 6 HOH A 103 403 134 HOH HOH . I 6 HOH A 104 404 147 HOH HOH . I 6 HOH A 105 405 113 HOH HOH . I 6 HOH A 106 406 25 HOH HOH . I 6 HOH A 107 407 19 HOH HOH . I 6 HOH A 108 408 74 HOH HOH . I 6 HOH A 109 409 68 HOH HOH . I 6 HOH A 110 410 110 HOH HOH . I 6 HOH A 111 411 94 HOH HOH . I 6 HOH A 112 412 45 HOH HOH . I 6 HOH A 113 413 84 HOH HOH . I 6 HOH A 114 414 83 HOH HOH . I 6 HOH A 115 415 13 HOH HOH . I 6 HOH A 116 416 31 HOH HOH . I 6 HOH A 117 417 30 HOH HOH . I 6 HOH A 118 418 150 HOH HOH . I 6 HOH A 119 419 120 HOH HOH . I 6 HOH A 120 420 142 HOH HOH . I 6 HOH A 121 421 137 HOH HOH . I 6 HOH A 122 422 22 HOH HOH . I 6 HOH A 123 423 34 HOH HOH . I 6 HOH A 124 424 108 HOH HOH . I 6 HOH A 125 425 62 HOH HOH . I 6 HOH A 126 426 98 HOH HOH . I 6 HOH A 127 427 1 HOH HOH . I 6 HOH A 128 428 41 HOH HOH . I 6 HOH A 129 429 138 HOH HOH . I 6 HOH A 130 430 89 HOH HOH . I 6 HOH A 131 431 88 HOH HOH . I 6 HOH A 132 432 95 HOH HOH . I 6 HOH A 133 433 149 HOH HOH . I 6 HOH A 134 434 28 HOH HOH . I 6 HOH A 135 435 121 HOH HOH . I 6 HOH A 136 436 146 HOH HOH . I 6 HOH A 137 437 90 HOH HOH . I 6 HOH A 138 438 91 HOH HOH . I 6 HOH A 139 439 86 HOH HOH . I 6 HOH A 140 440 50 HOH HOH . I 6 HOH A 141 441 152 HOH HOH . I 6 HOH A 142 442 151 HOH HOH . I 6 HOH A 143 443 36 HOH HOH . I 6 HOH A 144 444 71 HOH HOH . I 6 HOH A 145 445 51 HOH HOH . I 6 HOH A 146 446 65 HOH HOH . I 6 HOH A 147 447 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XEM . . . C 3 -113.359 24.757 12.464 1 28.95 ? C1 XEM 202 A 1 HETATM 2 C C2 XEM . . . C 3 -113.999 26.046 12.006 1 27.61 ? C2 XEM 202 A 1 HETATM 3 C C3 XEM . . . C 3 -113.618 26.454 10.577 1 23.1 ? C3 XEM 202 A 1 HETATM 4 N N1 XEM . . . C 3 -112.797 27.666 10.571 1 20.32 ? N1 XEM 202 A 1 HETATM 5 O O1 XEM . . . C 3 -113.038 28.338 11.727 1 19.26 ? O1 XEM 202 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 5 #