data_6E0B # _model_server_result.job_id LwOYPzh6ve88V-oBmwD2lw _model_server_result.datetime_utc '2025-02-18 06:34:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e0b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 6E0B # _exptl.entry_id 6E0B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6E0B _cell.length_a 85.522 _cell.length_b 85.522 _cell.length_c 138.879 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E0B _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6E0B _atom_sites.fract_transf_matrix[1][1] 0.011693 _atom_sites.fract_transf_matrix[1][2] 0.006751 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JZ8 A 1 1001 1001 JZ8 JZ8 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 GOL A 1 1004 1004 GOL GOL . F 5 GOL A 1 1005 1005 GOL GOL . G 5 GOL A 1 1006 1006 GOL GOL . H 6 LDA A 1 1007 1007 LDA LDA . I 7 HOH A 1 1101 32 HOH HOH . I 7 HOH A 2 1102 70 HOH HOH . I 7 HOH A 3 1103 44 HOH HOH . I 7 HOH A 4 1104 12 HOH HOH . I 7 HOH A 5 1105 84 HOH HOH . I 7 HOH A 6 1106 27 HOH HOH . I 7 HOH A 7 1107 128 HOH HOH . I 7 HOH A 8 1108 79 HOH HOH . I 7 HOH A 9 1109 51 HOH HOH . I 7 HOH A 10 1110 71 HOH HOH . I 7 HOH A 11 1111 34 HOH HOH . I 7 HOH A 12 1112 64 HOH HOH . I 7 HOH A 13 1113 17 HOH HOH . I 7 HOH A 14 1114 57 HOH HOH . I 7 HOH A 15 1115 6 HOH HOH . I 7 HOH A 16 1116 5 HOH HOH . I 7 HOH A 17 1117 38 HOH HOH . I 7 HOH A 18 1118 124 HOH HOH . I 7 HOH A 19 1119 117 HOH HOH . I 7 HOH A 20 1120 20 HOH HOH . I 7 HOH A 21 1121 3 HOH HOH . I 7 HOH A 22 1122 26 HOH HOH . I 7 HOH A 23 1123 2 HOH HOH . I 7 HOH A 24 1124 31 HOH HOH . I 7 HOH A 25 1125 25 HOH HOH . I 7 HOH A 26 1126 7 HOH HOH . I 7 HOH A 27 1127 58 HOH HOH . I 7 HOH A 28 1128 21 HOH HOH . I 7 HOH A 29 1129 54 HOH HOH . I 7 HOH A 30 1130 67 HOH HOH . I 7 HOH A 31 1131 9 HOH HOH . I 7 HOH A 32 1132 1 HOH HOH . I 7 HOH A 33 1133 74 HOH HOH . I 7 HOH A 34 1134 15 HOH HOH . I 7 HOH A 35 1135 56 HOH HOH . I 7 HOH A 36 1136 33 HOH HOH . I 7 HOH A 37 1137 72 HOH HOH . I 7 HOH A 38 1138 8 HOH HOH . I 7 HOH A 39 1139 111 HOH HOH . I 7 HOH A 40 1140 45 HOH HOH . I 7 HOH A 41 1141 73 HOH HOH . I 7 HOH A 42 1142 90 HOH HOH . I 7 HOH A 43 1143 65 HOH HOH . I 7 HOH A 44 1144 11 HOH HOH . I 7 HOH A 45 1145 83 HOH HOH . I 7 HOH A 46 1146 19 HOH HOH . I 7 HOH A 47 1147 29 HOH HOH . I 7 HOH A 48 1148 18 HOH HOH . I 7 HOH A 49 1149 59 HOH HOH . I 7 HOH A 50 1150 14 HOH HOH . I 7 HOH A 51 1151 55 HOH HOH . I 7 HOH A 52 1152 133 HOH HOH . I 7 HOH A 53 1153 16 HOH HOH . I 7 HOH A 54 1154 28 HOH HOH . I 7 HOH A 55 1155 23 HOH HOH . I 7 HOH A 56 1156 52 HOH HOH . I 7 HOH A 57 1157 42 HOH HOH . I 7 HOH A 58 1158 46 HOH HOH . I 7 HOH A 59 1159 102 HOH HOH . I 7 HOH A 60 1160 48 HOH HOH . I 7 HOH A 61 1161 97 HOH HOH . I 7 HOH A 62 1162 113 HOH HOH . I 7 HOH A 63 1163 53 HOH HOH . I 7 HOH A 64 1164 89 HOH HOH . I 7 HOH A 65 1165 96 HOH HOH . I 7 HOH A 66 1166 108 HOH HOH . I 7 HOH A 67 1167 121 HOH HOH . I 7 HOH A 68 1168 10 HOH HOH . I 7 HOH A 69 1169 101 HOH HOH . I 7 HOH A 70 1170 61 HOH HOH . I 7 HOH A 71 1171 92 HOH HOH . I 7 HOH A 72 1172 40 HOH HOH . I 7 HOH A 73 1173 62 HOH HOH . I 7 HOH A 74 1174 120 HOH HOH . I 7 HOH A 75 1175 130 HOH HOH . I 7 HOH A 76 1176 49 HOH HOH . I 7 HOH A 77 1177 41 HOH HOH . I 7 HOH A 78 1178 125 HOH HOH . I 7 HOH A 79 1179 81 HOH HOH . I 7 HOH A 80 1180 138 HOH HOH . I 7 HOH A 81 1181 78 HOH HOH . I 7 HOH A 82 1182 76 HOH HOH . I 7 HOH A 83 1183 115 HOH HOH . I 7 HOH A 84 1184 118 HOH HOH . I 7 HOH A 85 1185 30 HOH HOH . I 7 HOH A 86 1186 43 HOH HOH . I 7 HOH A 87 1187 122 HOH HOH . I 7 HOH A 88 1188 110 HOH HOH . I 7 HOH A 89 1189 126 HOH HOH . I 7 HOH A 90 1190 39 HOH HOH . I 7 HOH A 91 1191 107 HOH HOH . I 7 HOH A 92 1192 66 HOH HOH . I 7 HOH A 93 1193 68 HOH HOH . I 7 HOH A 94 1194 87 HOH HOH . I 7 HOH A 95 1195 85 HOH HOH . I 7 HOH A 96 1196 24 HOH HOH . I 7 HOH A 97 1197 132 HOH HOH . I 7 HOH A 98 1198 47 HOH HOH . I 7 HOH A 99 1199 114 HOH HOH . I 7 HOH A 100 1200 35 HOH HOH . I 7 HOH A 101 1201 63 HOH HOH . I 7 HOH A 102 1202 60 HOH HOH . I 7 HOH A 103 1203 129 HOH HOH . I 7 HOH A 104 1204 77 HOH HOH . I 7 HOH A 105 1205 131 HOH HOH . I 7 HOH A 106 1206 123 HOH HOH . I 7 HOH A 107 1207 80 HOH HOH . I 7 HOH A 108 1208 116 HOH HOH . I 7 HOH A 109 1209 99 HOH HOH . I 7 HOH A 110 1210 82 HOH HOH . I 7 HOH A 111 1211 109 HOH HOH . I 7 HOH A 112 1212 36 HOH HOH . I 7 HOH A 113 1213 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 82.379 -21.329 4.588 1 12.22 ? N1 FMN 1002 A 1 HETATM 2 C C2 FMN . . . C 3 82.909 -20.332 3.797 1 9.25 ? C2 FMN 1002 A 1 HETATM 3 O O2 FMN . . . C 3 82.659 -20.295 2.591 1 13.03 ? O2 FMN 1002 A 1 HETATM 4 N N3 FMN . . . C 3 83.72 -19.37 4.357 1 11.42 ? N3 FMN 1002 A 1 HETATM 5 C C4 FMN . . . C 3 84.002 -19.397 5.703 1 14.39 ? C4 FMN 1002 A 1 HETATM 6 O O4 FMN . . . C 3 84.729 -18.535 6.195 1 11.68 ? O4 FMN 1002 A 1 HETATM 7 C C4A FMN . . . C 3 83.472 -20.399 6.5 1 15.05 ? C4A FMN 1002 A 1 HETATM 8 N N5 FMN . . . C 3 83.753 -20.421 7.849 1 13.01 ? N5 FMN 1002 A 1 HETATM 9 C C5A FMN . . . C 3 83.24 -21.422 8.645 1 15.83 ? C5A FMN 1002 A 1 HETATM 10 C C6 FMN . . . C 3 83.539 -21.436 10.001 1 14.15 ? C6 FMN 1002 A 1 HETATM 11 C C7 FMN . . . C 3 83.021 -22.431 10.82 1 13.62 ? C7 FMN 1002 A 1 HETATM 12 C C7M FMN . . . C 3 83.368 -22.421 12.281 1 20.34 ? C7M FMN 1002 A 1 HETATM 13 C C8 FMN . . . C 3 82.205 -23.418 10.273 1 30.45 ? C8 FMN 1002 A 1 HETATM 14 C C8M FMN . . . C 3 81.625 -24.507 11.128 1 25.68 ? C8M FMN 1002 A 1 HETATM 15 C C9 FMN . . . C 3 81.906 -23.399 8.916 1 26.62 ? C9 FMN 1002 A 1 HETATM 16 C C9A FMN . . . C 3 82.422 -22.401 8.094 1 12.2 ? C9A FMN 1002 A 1 HETATM 17 N N10 FMN . . . C 3 82.129 -22.371 6.736 1 14.87 ? N10 FMN 1002 A 1 HETATM 18 C C10 FMN . . . C 3 82.659 -21.372 5.941 1 14.41 ? C10 FMN 1002 A 1 HETATM 19 C C1' FMN . . . C 3 81.249 -23.42 6.115 1 22.92 ? C1' FMN 1002 A 1 HETATM 20 C C2' FMN . . . C 3 82.089 -24.649 5.781 1 21.07 ? C2' FMN 1002 A 1 HETATM 21 O O2' FMN . . . C 3 83.108 -24.261 4.888 1 14.99 ? O2' FMN 1002 A 1 HETATM 22 C C3' FMN . . . C 3 81.257 -25.757 5.147 1 24.69 ? C3' FMN 1002 A 1 HETATM 23 O O3' FMN . . . C 3 80.733 -25.295 3.924 1 20.42 ? O3' FMN 1002 A 1 HETATM 24 C C4' FMN . . . C 3 80.121 -26.186 6.066 1 19.71 ? C4' FMN 1002 A 1 HETATM 25 O O4' FMN . . . C 3 80.586 -26.245 7.398 1 19.87 ? O4' FMN 1002 A 1 HETATM 26 C C5' FMN . . . C 3 79.542 -27.544 5.689 1 22.37 ? C5' FMN 1002 A 1 HETATM 27 O O5' FMN . . . C 3 80.557 -28.518 5.754 1 21.62 ? O5' FMN 1002 A 1 HETATM 28 P P FMN . . . C 3 80.544 -29.655 6.892 1 23.22 ? P FMN 1002 A 1 HETATM 29 O O1P FMN . . . C 3 81.074 -29.032 8.16 1 21.67 ? O1P FMN 1002 A 1 HETATM 30 O O2P FMN . . . C 3 81.436 -30.802 6.479 1 31.36 ? O2P FMN 1002 A 1 HETATM 31 O O3P FMN . . . C 3 79.133 -30.147 7.119 1 17.18 ? O3P FMN 1002 A 1 HETATM 32 H HN3 FMN . . . C 3 84.121 -18.619 3.759 1 13.7 ? HN3 FMN 1002 A 1 HETATM 33 H H6 FMN . . . C 3 84.184 -20.665 10.423 1 16.98 ? H6 FMN 1002 A 1 HETATM 34 H HM71 FMN . . . C 3 83.312 -23.435 12.675 1 24.41 ? HM71 FMN 1002 A 1 HETATM 35 H HM72 FMN . . . C 3 84.379 -22.035 12.411 1 24.41 ? HM72 FMN 1002 A 1 HETATM 36 H HM73 FMN . . . C 3 82.665 -21.784 12.817 1 24.41 ? HM73 FMN 1002 A 1 HETATM 37 H HM81 FMN . . . C 3 80.945 -25.115 10.531 1 30.82 ? HM81 FMN 1002 A 1 HETATM 38 H HM82 FMN . . . C 3 81.079 -24.063 11.961 1 30.82 ? HM82 FMN 1002 A 1 HETATM 39 H HM83 FMN . . . C 3 82.429 -25.134 11.514 1 30.82 ? HM83 FMN 1002 A 1 HETATM 40 H H9 FMN . . . C 3 81.264 -24.171 8.493 1 31.94 ? H9 FMN 1002 A 1 HETATM 41 H "H1'1" FMN . . . C 3 80.451 -23.692 6.806 1 27.5 ? "H1'1" FMN 1002 A 1 HETATM 42 H "H1'2" FMN . . . C 3 80.788 -23.028 5.208 1 27.5 ? "H1'2" FMN 1002 A 1 HETATM 43 H H2' FMN . . . C 3 82.51 -25.042 6.706 1 25.28 ? H2' FMN 1002 A 1 HETATM 44 H HO2' FMN . . . C 3 83.006 -24.748 4.044 1 17.99 ? HO2' FMN 1002 A 1 HETATM 45 H H3' FMN . . . C 3 81.897 -26.622 4.973 1 29.63 ? H3' FMN 1002 A 1 HETATM 46 H H4' FMN . . . C 3 79.329 -25.443 5.966 1 23.65 ? H4' FMN 1002 A 1 HETATM 47 H HO4' FMN . . . C 3 80.403 -27.134 7.768 1 23.84 ? HO4' FMN 1002 A 1 HETATM 48 H "H5'1" FMN . . . C 3 79.13 -27.504 4.681 1 26.84 ? "H5'1" FMN 1002 A 1 HETATM 49 H "H5'2" FMN . . . C 3 78.733 -27.805 6.372 1 26.84 ? "H5'2" FMN 1002 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 49 #