data_6E0B # _model_server_result.job_id yxmzjPb-atalxtI7tPV-dw _model_server_result.datetime_utc '2024-11-05 23:36:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e0b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 6E0B # _exptl.entry_id 6E0B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6E0B _cell.length_a 85.522 _cell.length_b 85.522 _cell.length_c 138.879 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E0B _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 389 n y N1 C6 ORO sing 390 n y N1 HN1 ORO sing 391 n n C2 O2 ORO doub 392 n n C2 N3 ORO sing 393 n y N3 C4 ORO sing 394 n y N3 HN3 ORO sing 395 n n C4 O4 ORO doub 396 n n C4 C5 ORO sing 397 n y C5 C6 ORO doub 398 n y C5 H5 ORO sing 399 n n C6 C7 ORO sing 400 n n C7 O71 ORO doub 401 n n C7 O72 ORO sing 402 n n O72 HO7 ORO sing 403 n n # _atom_sites.entry_id 6E0B _atom_sites.fract_transf_matrix[1][1] 0.011693 _atom_sites.fract_transf_matrix[1][2] 0.006751 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JZ8 A 1 1001 1001 JZ8 JZ8 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 GOL A 1 1004 1004 GOL GOL . F 5 GOL A 1 1005 1005 GOL GOL . G 5 GOL A 1 1006 1006 GOL GOL . H 6 LDA A 1 1007 1007 LDA LDA . I 7 HOH A 1 1101 32 HOH HOH . I 7 HOH A 2 1102 70 HOH HOH . I 7 HOH A 3 1103 44 HOH HOH . I 7 HOH A 4 1104 12 HOH HOH . I 7 HOH A 5 1105 84 HOH HOH . I 7 HOH A 6 1106 27 HOH HOH . I 7 HOH A 7 1107 128 HOH HOH . I 7 HOH A 8 1108 79 HOH HOH . I 7 HOH A 9 1109 51 HOH HOH . I 7 HOH A 10 1110 71 HOH HOH . I 7 HOH A 11 1111 34 HOH HOH . I 7 HOH A 12 1112 64 HOH HOH . I 7 HOH A 13 1113 17 HOH HOH . I 7 HOH A 14 1114 57 HOH HOH . I 7 HOH A 15 1115 6 HOH HOH . I 7 HOH A 16 1116 5 HOH HOH . I 7 HOH A 17 1117 38 HOH HOH . I 7 HOH A 18 1118 124 HOH HOH . I 7 HOH A 19 1119 117 HOH HOH . I 7 HOH A 20 1120 20 HOH HOH . I 7 HOH A 21 1121 3 HOH HOH . I 7 HOH A 22 1122 26 HOH HOH . I 7 HOH A 23 1123 2 HOH HOH . I 7 HOH A 24 1124 31 HOH HOH . I 7 HOH A 25 1125 25 HOH HOH . I 7 HOH A 26 1126 7 HOH HOH . I 7 HOH A 27 1127 58 HOH HOH . I 7 HOH A 28 1128 21 HOH HOH . I 7 HOH A 29 1129 54 HOH HOH . I 7 HOH A 30 1130 67 HOH HOH . I 7 HOH A 31 1131 9 HOH HOH . I 7 HOH A 32 1132 1 HOH HOH . I 7 HOH A 33 1133 74 HOH HOH . I 7 HOH A 34 1134 15 HOH HOH . I 7 HOH A 35 1135 56 HOH HOH . I 7 HOH A 36 1136 33 HOH HOH . I 7 HOH A 37 1137 72 HOH HOH . I 7 HOH A 38 1138 8 HOH HOH . I 7 HOH A 39 1139 111 HOH HOH . I 7 HOH A 40 1140 45 HOH HOH . I 7 HOH A 41 1141 73 HOH HOH . I 7 HOH A 42 1142 90 HOH HOH . I 7 HOH A 43 1143 65 HOH HOH . I 7 HOH A 44 1144 11 HOH HOH . I 7 HOH A 45 1145 83 HOH HOH . I 7 HOH A 46 1146 19 HOH HOH . I 7 HOH A 47 1147 29 HOH HOH . I 7 HOH A 48 1148 18 HOH HOH . I 7 HOH A 49 1149 59 HOH HOH . I 7 HOH A 50 1150 14 HOH HOH . I 7 HOH A 51 1151 55 HOH HOH . I 7 HOH A 52 1152 133 HOH HOH . I 7 HOH A 53 1153 16 HOH HOH . I 7 HOH A 54 1154 28 HOH HOH . I 7 HOH A 55 1155 23 HOH HOH . I 7 HOH A 56 1156 52 HOH HOH . I 7 HOH A 57 1157 42 HOH HOH . I 7 HOH A 58 1158 46 HOH HOH . I 7 HOH A 59 1159 102 HOH HOH . I 7 HOH A 60 1160 48 HOH HOH . I 7 HOH A 61 1161 97 HOH HOH . I 7 HOH A 62 1162 113 HOH HOH . I 7 HOH A 63 1163 53 HOH HOH . I 7 HOH A 64 1164 89 HOH HOH . I 7 HOH A 65 1165 96 HOH HOH . I 7 HOH A 66 1166 108 HOH HOH . I 7 HOH A 67 1167 121 HOH HOH . I 7 HOH A 68 1168 10 HOH HOH . I 7 HOH A 69 1169 101 HOH HOH . I 7 HOH A 70 1170 61 HOH HOH . I 7 HOH A 71 1171 92 HOH HOH . I 7 HOH A 72 1172 40 HOH HOH . I 7 HOH A 73 1173 62 HOH HOH . I 7 HOH A 74 1174 120 HOH HOH . I 7 HOH A 75 1175 130 HOH HOH . I 7 HOH A 76 1176 49 HOH HOH . I 7 HOH A 77 1177 41 HOH HOH . I 7 HOH A 78 1178 125 HOH HOH . I 7 HOH A 79 1179 81 HOH HOH . I 7 HOH A 80 1180 138 HOH HOH . I 7 HOH A 81 1181 78 HOH HOH . I 7 HOH A 82 1182 76 HOH HOH . I 7 HOH A 83 1183 115 HOH HOH . I 7 HOH A 84 1184 118 HOH HOH . I 7 HOH A 85 1185 30 HOH HOH . I 7 HOH A 86 1186 43 HOH HOH . I 7 HOH A 87 1187 122 HOH HOH . I 7 HOH A 88 1188 110 HOH HOH . I 7 HOH A 89 1189 126 HOH HOH . I 7 HOH A 90 1190 39 HOH HOH . I 7 HOH A 91 1191 107 HOH HOH . I 7 HOH A 92 1192 66 HOH HOH . I 7 HOH A 93 1193 68 HOH HOH . I 7 HOH A 94 1194 87 HOH HOH . I 7 HOH A 95 1195 85 HOH HOH . I 7 HOH A 96 1196 24 HOH HOH . I 7 HOH A 97 1197 132 HOH HOH . I 7 HOH A 98 1198 47 HOH HOH . I 7 HOH A 99 1199 114 HOH HOH . I 7 HOH A 100 1200 35 HOH HOH . I 7 HOH A 101 1201 63 HOH HOH . I 7 HOH A 102 1202 60 HOH HOH . I 7 HOH A 103 1203 129 HOH HOH . I 7 HOH A 104 1204 77 HOH HOH . I 7 HOH A 105 1205 131 HOH HOH . I 7 HOH A 106 1206 123 HOH HOH . I 7 HOH A 107 1207 80 HOH HOH . I 7 HOH A 108 1208 116 HOH HOH . I 7 HOH A 109 1209 99 HOH HOH . I 7 HOH A 110 1210 82 HOH HOH . I 7 HOH A 111 1211 109 HOH HOH . I 7 HOH A 112 1212 36 HOH HOH . I 7 HOH A 113 1213 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . D 4 80.163 -19.177 8.826 1 14.87 ? N1 ORO 1003 A 1 HETATM 2 C C2 ORO . . . D 4 79.63 -20.106 7.962 1 27.35 ? C2 ORO 1003 A 1 HETATM 3 O O2 ORO . . . D 4 79.027 -21.051 8.395 1 27.66 ? O2 ORO 1003 A 1 HETATM 4 N N3 ORO . . . D 4 79.791 -19.952 6.645 1 25.59 ? N3 ORO 1003 A 1 HETATM 5 C C4 ORO . . . D 4 80.471 -18.888 6.158 1 22.76 ? C4 ORO 1003 A 1 HETATM 6 O O4 ORO . . . D 4 80.615 -18.753 4.98 1 17.29 ? O4 ORO 1003 A 1 HETATM 7 C C5 ORO . . . D 4 80.993 -17.972 7.023 1 14.03 ? C5 ORO 1003 A 1 HETATM 8 C C6 ORO . . . D 4 80.83 -18.127 8.358 1 43.4 ? C6 ORO 1003 A 1 HETATM 9 C C7 ORO . . . D 4 81.406 -17.104 9.317 1 39.05 ? C7 ORO 1003 A 1 HETATM 10 O O71 ORO . . . D 4 82.541 -16.54 9.068 1 39.11 ? O71 ORO 1003 A 1 HETATM 11 O O72 ORO . . . D 4 80.78 -16.801 10.35 1 28.54 ? O72 ORO 1003 A 1 HETATM 12 H HN1 ORO . . . D 4 80.065 -19.276 9.677 1 17.84 ? HN1 ORO 1003 A 1 HETATM 13 H HN3 ORO . . . D 4 79.429 -20.588 6.052 1 30.71 ? HN3 ORO 1003 A 1 HETATM 14 H H5 ORO . . . D 4 81.511 -17.162 6.663 1 16.84 ? H5 ORO 1003 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 444 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #