data_6E1C # _model_server_result.job_id y8CJXaJZmi0HhE1SAH6ntQ _model_server_result.datetime_utc '2024-11-01 03:38:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e1c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 6E1C # _exptl.entry_id 6E1C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6E1C _cell.length_a 71.557 _cell.length_b 85.757 _cell.length_c 133.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E1C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 70 A CYS 70 1_555 D CBB HEC . A HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc1 A NE2 HIS 74 A HIS 74 1_555 D FE HEC . A HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 A OD1 ASN 98 A ASN 98 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc3 A NE2 HIS 227 A HIS 227 1_555 C FE HEC . A HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc4 A O THR 293 A THR 293 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc5 A O PRO 295 A PRO 295 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc6 A OH TYR 312 A TYR 312 1_555 C FE HEC . A HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? covale ? covale2 B SG CYS 70 B CYS 70 1_555 F CBB HEC . B HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc7 B NE2 HIS 74 B HIS 74 1_555 F FE HEC . B HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc8 B NE2 HIS 227 B HIS 227 1_555 G FE HEC . B HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc9 B O THR 293 B THR 293 1_555 H CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc10 B O PRO 295 B PRO 295 1_555 H CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc11 B OH TYR 312 B TYR 312 1_555 G FE HEC . B HEC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6E1C _atom_sites.fract_transf_matrix[1][1] 0.013975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011661 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007485 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 401 1 HEC HEC . D 2 HEC A 1 402 3 HEC HEC . E 3 CA A 1 403 1 CA CA . F 2 HEC B 1 401 2 HEC HEC . G 2 HEC B 1 402 4 HEC HEC . H 3 CA B 1 403 2 CA CA . I 4 HOH A 1 501 123 HOH HOH . I 4 HOH A 2 502 108 HOH HOH . I 4 HOH A 3 503 18 HOH HOH . I 4 HOH A 4 504 102 HOH HOH . I 4 HOH A 5 505 46 HOH HOH . I 4 HOH A 6 506 12 HOH HOH . I 4 HOH A 7 507 94 HOH HOH . I 4 HOH A 8 508 68 HOH HOH . I 4 HOH A 9 509 110 HOH HOH . I 4 HOH A 10 510 117 HOH HOH . I 4 HOH A 11 511 61 HOH HOH . I 4 HOH A 12 512 51 HOH HOH . I 4 HOH A 13 513 96 HOH HOH . I 4 HOH A 14 514 54 HOH HOH . I 4 HOH A 15 515 55 HOH HOH . I 4 HOH A 16 516 38 HOH HOH . I 4 HOH A 17 517 62 HOH HOH . I 4 HOH A 18 518 48 HOH HOH . I 4 HOH A 19 519 93 HOH HOH . I 4 HOH A 20 520 125 HOH HOH . I 4 HOH A 21 521 116 HOH HOH . I 4 HOH A 22 522 127 HOH HOH . I 4 HOH A 23 523 43 HOH HOH . I 4 HOH A 24 524 20 HOH HOH . I 4 HOH A 25 525 114 HOH HOH . I 4 HOH A 26 526 105 HOH HOH . J 4 HOH B 1 501 64 HOH HOH . J 4 HOH B 2 502 97 HOH HOH . J 4 HOH B 3 503 28 HOH HOH . J 4 HOH B 4 504 126 HOH HOH . J 4 HOH B 5 505 60 HOH HOH . J 4 HOH B 6 506 128 HOH HOH . J 4 HOH B 7 507 26 HOH HOH . J 4 HOH B 8 508 95 HOH HOH . J 4 HOH B 9 509 34 HOH HOH . J 4 HOH B 10 510 56 HOH HOH . J 4 HOH B 11 511 2 HOH HOH . J 4 HOH B 12 512 67 HOH HOH . J 4 HOH B 13 513 109 HOH HOH . J 4 HOH B 14 514 11 HOH HOH . J 4 HOH B 15 515 59 HOH HOH . J 4 HOH B 16 516 113 HOH HOH . J 4 HOH B 17 517 41 HOH HOH . J 4 HOH B 18 518 121 HOH HOH . J 4 HOH B 19 519 53 HOH HOH . J 4 HOH B 20 520 118 HOH HOH . J 4 HOH B 21 521 58 HOH HOH . J 4 HOH B 22 522 98 HOH HOH . J 4 HOH B 23 523 131 HOH HOH . J 4 HOH B 24 524 63 HOH HOH . J 4 HOH B 25 525 4 HOH HOH . J 4 HOH B 26 526 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . D 2 34.081 54.145 54.364 1 10.13 ? FE HEC 402 A 1 HETATM 2 C CHA HEC . . . D 2 35.226 52.502 57.075 1 9.6 ? CHA HEC 402 A 1 HETATM 3 C CHB HEC . . . D 2 31.003 52.742 54.769 1 9.56 ? CHB HEC 402 A 1 HETATM 4 C CHC HEC . . . D 2 32.775 56.561 52.462 1 9.06 ? CHC HEC 402 A 1 HETATM 5 C CHD HEC . . . D 2 37.244 55.207 53.569 1 9.43 ? CHD HEC 402 A 1 HETATM 6 N NA HEC . . . D 2 33.256 52.732 55.665 1 9.78 ? NA HEC 402 A 1 HETATM 7 C C1A HEC . . . D 2 33.85 52.163 56.714 1 10.17 ? C1A HEC 402 A 1 HETATM 8 C C2A HEC . . . D 2 32.988 51.216 57.477 1 11.38 ? C2A HEC 402 A 1 HETATM 9 C C3A HEC . . . D 2 31.695 51.304 56.764 1 10.78 ? C3A HEC 402 A 1 HETATM 10 C C4A HEC . . . D 2 32 52.311 55.725 1 10.04 ? C4A HEC 402 A 1 HETATM 11 C CMA HEC . . . D 2 30.384 50.585 57.031 1 10.74 ? CMA HEC 402 A 1 HETATM 12 C CAA HEC . . . D 2 33.302 50.329 58.672 1 13.68 ? CAA HEC 402 A 1 HETATM 13 C CBA HEC . . . D 2 33.4 48.923 58.048 1 17.19 ? CBA HEC 402 A 1 HETATM 14 C CGA HEC . . . D 2 33.876 47.808 58.951 1 20.01 ? CGA HEC 402 A 1 HETATM 15 O O1A HEC . . . D 2 34.256 46.736 58.425 1 22.91 ? O1A HEC 402 A 1 HETATM 16 O O2A HEC . . . D 2 33.881 47.963 60.188 1 21.67 ? O2A HEC 402 A 1 HETATM 17 N NB HEC . . . D 2 32.169 54.528 53.658 1 9.29 ? NB HEC 402 A 1 HETATM 18 C C1B HEC . . . D 2 31.007 54.011 54.044 1 9.32 ? C1B HEC 402 A 1 HETATM 19 C C2B HEC . . . D 2 29.796 54.664 53.475 1 9.23 ? C2B HEC 402 A 1 HETATM 20 C C3B HEC . . . D 2 30.415 55.797 52.801 1 9.21 ? C3B HEC 402 A 1 HETATM 21 C C4B HEC . . . D 2 31.827 55.633 53.039 1 9.12 ? C4B HEC 402 A 1 HETATM 22 C CMB HEC . . . D 2 28.352 54.263 53.587 1 9.15 ? CMB HEC 402 A 1 HETATM 23 C CAB HEC . . . D 2 29.867 56.967 52.071 1 9.33 ? CAB HEC 402 A 1 HETATM 24 C CBB HEC . . . D 2 28.4 57.12 51.855 1 9.75 ? CBB HEC 402 A 1 HETATM 25 N NC HEC . . . D 2 34.88 55.602 53.13 1 9.23 ? NC HEC 402 A 1 HETATM 26 C C1C HEC . . . D 2 34.212 56.499 52.448 1 9.11 ? C1C HEC 402 A 1 HETATM 27 C C2C HEC . . . D 2 35.003 57.465 51.683 1 9.42 ? C2C HEC 402 A 1 HETATM 28 C C3C HEC . . . D 2 36.358 57.052 52.074 1 9.46 ? C3C HEC 402 A 1 HETATM 29 C C4C HEC . . . D 2 36.145 55.943 52.977 1 9.31 ? C4C HEC 402 A 1 HETATM 30 C CMC HEC . . . D 2 34.494 58.574 50.802 1 9.57 ? CMC HEC 402 A 1 HETATM 31 C CAC HEC . . . D 2 37.698 57.576 51.699 1 9.56 ? CAC HEC 402 A 1 HETATM 32 C CBC HEC . . . D 2 37.861 58.741 50.769 1 9.55 ? CBC HEC 402 A 1 HETATM 33 N ND HEC . . . D 2 35.982 53.835 55.122 1 9.22 ? ND HEC 402 A 1 HETATM 34 C C1D HEC . . . D 2 37.118 54.439 54.809 1 9.48 ? C1D HEC 402 A 1 HETATM 35 C C2D HEC . . . D 2 38.284 54.143 55.689 1 9.48 ? C2D HEC 402 A 1 HETATM 36 C C3D HEC . . . D 2 37.677 53.327 56.742 1 9.6 ? C3D HEC 402 A 1 HETATM 37 C C4D HEC . . . D 2 36.24 53.281 56.323 1 9.66 ? C4D HEC 402 A 1 HETATM 38 C CMD HEC . . . D 2 39.713 54.563 55.488 1 9.21 ? CMD HEC 402 A 1 HETATM 39 C CAD HEC . . . D 2 38.327 52.751 57.968 1 9.9 ? CAD HEC 402 A 1 HETATM 40 C CBD HEC . . . D 2 37.96 53.798 59.044 1 10.26 ? CBD HEC 402 A 1 HETATM 41 C CGD HEC . . . D 2 38.818 53.696 60.292 1 10.93 ? CGD HEC 402 A 1 HETATM 42 O O1D HEC . . . D 2 39.613 54.609 60.538 1 11.54 ? O1D HEC 402 A 1 HETATM 43 O O2D HEC . . . D 2 38.76 52.716 61.056 1 11.35 ? O2D HEC 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #