data_6E1K
#
_model_server_result.job_id            -R_4Nnt8PQFAraITM2KFfw 
_model_server_result.datetime_utc      '2024-12-24 18:23:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6e1k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":804}' 
#
_entry.id    6E1K 
#
_exptl.entry_id    6E1K 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6E1K 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6E1K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 23 C CYS 23 1_555 C SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 E SG CYS 23 E CYS 23 1_555 E SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 F SG CYS 22 F CYS 22 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 A C SEP 12 A SEP 22 1_555 A N GLU 13 A GLU 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C ILE 15 A ILE 25 1_555 A N TPO 16 A TPO 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 A C TPO 16 A TPO 26 1_555 A N HIS 17 A HIS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C GLY 18 A GLY 28 1_555 A N TPO 19 A TPO 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 A C TPO 19 A TPO 29 1_555 A N PRO 20 A PRO 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale6 A NE1 TRP 270 A TRP 280 1_555 P O1 PLM . A PLM 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? 
metalc ? metalc1 A OD1 ASP 325 A ASP 335 1_555 J CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc2 A OD1 ASP 327 A ASP 337 1_555 J CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? 
metalc ? metalc3 A OD1 ASN 329 A ASN 339 1_555 J CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
metalc ? metalc4 A OE2 GLU 331 A GLU 341 1_555 J CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc5 A OE1 GLU 364 A GLU 374 1_555 I CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? 
metalc ? metalc6 A OE2 GLU 364 A GLU 374 1_555 I CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? 
metalc ? metalc7 A OD2 ASP 366 A ASP 376 1_555 I CA CA . A CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.133 ? 
covale ? covale7 A OG1 THR 640 A THR 650 1_555 Q CA PLM . A PLM 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? 
covale ? covale8 B C SEP 12 B SEP 22 1_555 B N GLU 13 B GLU 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 B C ILE 15 B ILE 25 1_555 B N TPO 16 B TPO 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale10 B C TPO 16 B TPO 26 1_555 B N HIS 17 B HIS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale11 B C GLY 18 B GLY 28 1_555 B N TPO 19 B TPO 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale12 B C TPO 19 B TPO 29 1_555 B N PRO 20 B PRO 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? 
metalc ? metalc8 B OD1 ASP 325 B ASP 335 1_555 U CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc9 B OD1 ASP 327 B ASP 337 1_555 U CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? 
metalc ? metalc10 B OD2 ASP 327 B ASP 337 1_555 U CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc11 B OD1 ASN 329 B ASN 339 1_555 U CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc12 B O GLU 331 B GLU 341 1_555 U CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc13 B OE1 GLU 364 B GLU 374 1_555 T CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc14 B OE2 GLU 364 B GLU 374 1_555 T CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
covale ? covale13 B OG1 THR 640 B THR 650 1_555 AA CA PLM . B PLM 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6E1K 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 CA A 1 801 802 CA CA . 
H 4 CA A 1 802 804 CA CA . 
I 4 CA A 1 803 805 CA CA . 
J 4 CA A 1 804 806 CA CA . 
K 5 PLM A 1 805 901 PLM PLM . 
L 5 PLM A 1 806 902 PLM PLM . 
M 5 PLM A 1 807 903 PLM PLM . 
N 5 PLM A 1 808 904 PLM PLM . 
O 5 PLM A 1 809 905 PLM PLM . 
P 5 PLM A 1 810 906 PLM PLM . 
Q 5 PLM A 1 811 907 PLM PLM . 
R 5 PLM A 1 812 906 PLM PLM . 
S 4 CA B 1 801 803 CA CA . 
T 4 CA B 1 802 805 CA CA . 
U 4 CA B 1 803 806 CA CA . 
V 5 PLM B 1 804 901 PLM PLM . 
W 5 PLM B 1 805 902 PLM PLM . 
X 5 PLM B 1 806 903 PLM PLM . 
Y 5 PLM B 1 807 904 PLM PLM . 
Z 5 PLM B 1 808 905 PLM PLM . 
AA 5 PLM B 1 809 907 PLM PLM . 
BA 6 HOH A 1 901 1 HOH HOH . 
CA 6 HOH B 1 901 2 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               185.962 
_atom_site.Cartn_y               141.674 
_atom_site.Cartn_z               195.298 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        147 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           804 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#