data_6E1M
#
_model_server_result.job_id            EmXLiK3uJkUXlEWIZHG6vA 
_model_server_result.datetime_utc      '2024-11-08 01:17:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6e1m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":805}' 
#
_entry.id    6E1M 
#
_exptl.entry_id    6E1M 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6E1M 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6E1M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 P N N 
? 2 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SEP 12 A SEP 22 1_555 A N GLU 13 A GLU 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C ILE 15 A ILE 25 1_555 A N TPO 16 A TPO 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale3 A C TPO 16 A TPO 26 1_555 A N HIS 17 A HIS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 A C GLY 18 A GLY 28 1_555 A N TPO 19 A TPO 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 A C TPO 19 A TPO 29 1_555 A N PRO 20 A PRO 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? 
covale ? covale6 A CE2 PHE 69 A PHE 79 1_555 O C36 3PH . A 3PH 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? 
covale ? covale7 A CG2 ILE 189 A ILE 199 1_555 O C34 3PH . A 3PH 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? 
covale ? covale8 A OE1 GLU 191 A GLU 201 1_555 O C23 3PH . A 3PH 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale9 A NE1 TRP 270 A TRP 280 1_555 M O1 PLM . A PLM 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? 
metalc ? metalc1 A OD1 ASP 325 A ASP 335 1_555 G CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc2 A OD1 ASN 329 A ASN 339 1_555 G CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc3 A O GLU 331 A GLU 341 1_555 G CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
metalc ? metalc4 A OE2 GLU 364 A GLU 374 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
covale ? covale10 A OG1 THR 640 A THR 650 1_555 N CA PLM . A PLM 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? 
covale ? covale11 B C SEP 12 B SEP 22 1_555 B N GLU 13 B GLU 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale12 B C ILE 15 B ILE 25 1_555 B N TPO 16 B TPO 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale13 B C TPO 16 B TPO 26 1_555 B N HIS 17 B HIS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale14 B C GLY 18 B GLY 28 1_555 B N TPO 19 B TPO 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale15 B C TPO 19 B TPO 29 1_555 B N PRO 20 B PRO 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
covale ? covale16 B CZ PHE 69 B PHE 79 1_555 Y C35 3PH . B 3PH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? 
covale ? covale17 B CG2 ILE 189 B ILE 199 1_555 Y C34 3PH . B 3PH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? 
covale ? covale18 B OE1 GLU 191 B GLU 201 1_555 Y C23 3PH . B 3PH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
metalc ? metalc5 B OD1 ASP 327 B ASP 337 1_555 Q CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? 
metalc ? metalc6 B OD2 ASP 327 B ASP 337 1_555 Q CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc7 B OD1 ASN 329 B ASN 339 1_555 Q CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? 
metalc ? metalc8 B O GLU 331 B GLU 341 1_555 Q CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc9 B OE1 GLU 364 B GLU 374 1_555 P CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? 
metalc ? metalc10 B OE2 GLU 364 B GLU 374 1_555 P CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
covale ? covale19 B OG1 THR 640 B THR 650 1_555 X CA PLM . B PLM 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6E1M 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 801 802 CA CA . 
D 2 CA A 1 802 803 CA CA . 
E 2 CA A 1 803 804 CA CA . 
F 2 CA A 1 804 805 CA CA . 
G 2 CA A 1 805 806 CA CA . 
H 3 PLM A 1 806 901 PLM PLM . 
I 3 PLM A 1 807 902 PLM PLM . 
J 3 PLM A 1 808 903 PLM PLM . 
K 3 PLM A 1 809 904 PLM PLM . 
L 3 PLM A 1 810 905 PLM PLM . 
M 3 PLM A 1 811 906 PLM PLM . 
N 3 PLM A 1 812 907 PLM PLM . 
O 4 3PH A 1 813 920 3PH 6PH . 
P 2 CA B 1 801 805 CA CA . 
Q 2 CA B 1 802 806 CA CA . 
R 3 PLM B 1 803 901 PLM PLM . 
S 3 PLM B 1 804 902 PLM PLM . 
T 3 PLM B 1 805 903 PLM PLM . 
U 3 PLM B 1 806 904 PLM PLM . 
V 3 PLM B 1 807 905 PLM PLM . 
W 3 PLM B 1 808 906 PLM PLM . 
X 3 PLM B 1 809 907 PLM PLM . 
Y 4 3PH B 1 810 920 3PH 6PH . 
Z 5 HOH A 1 901 1 HOH HOH . 
AA 5 HOH B 1 901 2 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               184.213 
_atom_site.Cartn_y               143.411 
_atom_site.Cartn_z               194.462 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        173.71 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           805 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#