data_6E20 # _model_server_result.job_id az4jyiei7u_JeA4TUVARTw _model_server_result.datetime_utc '2025-02-26 17:51:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e20 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 6E20 # _exptl.entry_id 6E20 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6E20 _cell.length_a 40.438 _cell.length_b 40.438 _cell.length_c 303.639 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E20 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.comp_id_2 NDG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NDG 1 C 1 NDG A 201 NDG 2 n C GAL 2 C 2 GAL A 202 GAL 2 n D NDG 1 D 1 NDG B 201 NDG 2 n D GAL 2 D 2 GAL B 202 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 55 A GLN 55 1_555 A N YCM 56 A YCM 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C YCM 56 A YCM 56 1_555 A N THR 57 A THR 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C TRP 68 A TRP 68 1_555 A N YCM 69 A YCM 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C YCM 69 A YCM 69 1_555 A N GLU 70 A GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 B C GLN 55 B GLN 55 1_555 B N YCM 56 B YCM 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale6 B C YCM 56 B YCM 56 1_555 B N THR 57 B THR 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 B C TRP 68 B TRP 68 1_555 B N YCM 69 B YCM 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale8 B C YCM 69 B YCM 69 1_555 B N GLU 70 B GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 C O4 NDG . C NDG 1 1_555 C C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale10 D O4 NDG . D NDG 1 1_555 D C1 GAL . D GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? metalc ? metalc1 A O GLY 53 A GLY 53 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc2 A OE2 GLU 94 A GLU 94 1_555 F MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 E MG MG . A MG 203 1_555 G O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc4 E MG MG . A MG 203 1_555 G O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc5 E MG MG . A MG 203 1_555 G O HOH . A HOH 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc6 E MG MG . A MG 203 1_555 H O HOH . B HOH 303 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc7 E MG MG . A MG 203 1_555 H O HOH . B HOH 308 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc8 F MG MG . A MG 204 1_555 G O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc9 F MG MG . A MG 204 1_555 G O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc10 F MG MG . A MG 204 1_555 D O7 NDG . D NDG 1 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6E20 _atom_sites.fract_transf_matrix[1][1] 0.024729 _atom_sites.fract_transf_matrix[1][2] 0.014277 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 203 203 MG MG . F 3 MG A 1 204 204 MG MG . G 4 HOH A 1 301 301 HOH HOH . G 4 HOH A 2 302 310 HOH HOH . G 4 HOH A 3 303 312 HOH HOH . G 4 HOH A 4 304 306 HOH HOH . G 4 HOH A 5 305 305 HOH HOH . G 4 HOH A 6 306 316 HOH HOH . G 4 HOH A 7 307 304 HOH HOH . G 4 HOH A 8 308 303 HOH HOH . G 4 HOH A 9 309 307 HOH HOH . G 4 HOH A 10 310 309 HOH HOH . G 4 HOH A 11 311 308 HOH HOH . G 4 HOH A 12 312 318 HOH HOH . G 4 HOH A 13 313 331 HOH HOH . G 4 HOH A 14 314 313 HOH HOH . G 4 HOH A 15 315 315 HOH HOH . G 4 HOH A 16 316 317 HOH HOH . G 4 HOH A 17 317 314 HOH HOH . G 4 HOH A 18 318 321 HOH HOH . G 4 HOH A 19 319 311 HOH HOH . G 4 HOH A 20 320 319 HOH HOH . G 4 HOH A 21 321 331 HOH HOH . G 4 HOH A 22 322 302 HOH HOH . G 4 HOH A 23 323 323 HOH HOH . G 4 HOH A 24 324 326 HOH HOH . G 4 HOH A 25 325 330 HOH HOH . G 4 HOH A 26 326 324 HOH HOH . G 4 HOH A 27 327 320 HOH HOH . G 4 HOH A 28 328 325 HOH HOH . G 4 HOH A 29 329 333 HOH HOH . G 4 HOH A 30 330 328 HOH HOH . G 4 HOH A 31 331 332 HOH HOH . G 4 HOH A 32 332 329 HOH HOH . G 4 HOH A 33 333 327 HOH HOH . G 4 HOH A 34 334 337 HOH HOH . G 4 HOH A 35 335 322 HOH HOH . G 4 HOH A 36 336 339 HOH HOH . G 4 HOH A 37 337 341 HOH HOH . G 4 HOH A 38 338 335 HOH HOH . G 4 HOH A 39 339 334 HOH HOH . G 4 HOH A 40 340 340 HOH HOH . G 4 HOH A 41 341 345 HOH HOH . G 4 HOH A 42 342 346 HOH HOH . G 4 HOH A 43 343 347 HOH HOH . G 4 HOH A 44 344 348 HOH HOH . G 4 HOH A 45 345 344 HOH HOH . G 4 HOH A 46 346 350 HOH HOH . G 4 HOH A 47 347 336 HOH HOH . G 4 HOH A 48 348 360 HOH HOH . G 4 HOH A 49 349 349 HOH HOH . G 4 HOH A 50 350 352 HOH HOH . G 4 HOH A 51 351 343 HOH HOH . G 4 HOH A 52 352 353 HOH HOH . G 4 HOH A 53 353 354 HOH HOH . G 4 HOH A 54 354 359 HOH HOH . G 4 HOH A 55 355 358 HOH HOH . G 4 HOH A 56 356 357 HOH HOH . G 4 HOH A 57 357 355 HOH HOH . G 4 HOH A 58 358 362 HOH HOH . G 4 HOH A 59 359 361 HOH HOH . G 4 HOH A 60 360 363 HOH HOH . G 4 HOH A 61 361 368 HOH HOH . G 4 HOH A 62 362 364 HOH HOH . G 4 HOH A 63 363 367 HOH HOH . G 4 HOH A 64 364 365 HOH HOH . G 4 HOH A 65 365 342 HOH HOH . G 4 HOH A 66 366 369 HOH HOH . G 4 HOH A 67 367 370 HOH HOH . G 4 HOH A 68 368 378 HOH HOH . G 4 HOH A 69 369 373 HOH HOH . G 4 HOH A 70 370 371 HOH HOH . G 4 HOH A 71 371 366 HOH HOH . G 4 HOH A 72 372 372 HOH HOH . G 4 HOH A 73 373 375 HOH HOH . G 4 HOH A 74 374 379 HOH HOH . G 4 HOH A 75 375 374 HOH HOH . G 4 HOH A 76 376 377 HOH HOH . G 4 HOH A 77 377 380 HOH HOH . G 4 HOH A 78 378 381 HOH HOH . G 4 HOH A 79 379 382 HOH HOH . G 4 HOH A 80 380 383 HOH HOH . H 4 HOH B 1 301 305 HOH HOH . H 4 HOH B 2 302 303 HOH HOH . H 4 HOH B 3 303 356 HOH HOH . H 4 HOH B 4 304 304 HOH HOH . H 4 HOH B 5 305 308 HOH HOH . H 4 HOH B 6 306 306 HOH HOH . H 4 HOH B 7 307 310 HOH HOH . H 4 HOH B 8 308 376 HOH HOH . H 4 HOH B 9 309 309 HOH HOH . H 4 HOH B 10 310 326 HOH HOH . H 4 HOH B 11 311 323 HOH HOH . H 4 HOH B 12 312 307 HOH HOH . H 4 HOH B 13 313 322 HOH HOH . H 4 HOH B 14 314 313 HOH HOH . H 4 HOH B 15 315 319 HOH HOH . H 4 HOH B 16 316 311 HOH HOH . H 4 HOH B 17 317 324 HOH HOH . H 4 HOH B 18 318 312 HOH HOH . H 4 HOH B 19 319 320 HOH HOH . H 4 HOH B 20 320 321 HOH HOH . H 4 HOH B 21 321 316 HOH HOH . H 4 HOH B 22 322 314 HOH HOH . H 4 HOH B 23 323 315 HOH HOH . H 4 HOH B 24 324 318 HOH HOH . H 4 HOH B 25 325 328 HOH HOH . H 4 HOH B 26 326 325 HOH HOH . H 4 HOH B 27 327 329 HOH HOH . H 4 HOH B 28 328 317 HOH HOH . H 4 HOH B 29 329 330 HOH HOH . H 4 HOH B 30 330 338 HOH HOH . H 4 HOH B 31 331 332 HOH HOH . H 4 HOH B 32 332 327 HOH HOH . H 4 HOH B 33 333 335 HOH HOH . H 4 HOH B 34 334 340 HOH HOH . H 4 HOH B 35 335 345 HOH HOH . H 4 HOH B 36 336 342 HOH HOH . H 4 HOH B 37 337 341 HOH HOH . H 4 HOH B 38 338 333 HOH HOH . H 4 HOH B 39 339 339 HOH HOH . H 4 HOH B 40 340 337 HOH HOH . H 4 HOH B 41 341 343 HOH HOH . H 4 HOH B 42 342 349 HOH HOH . H 4 HOH B 43 343 347 HOH HOH . H 4 HOH B 44 344 344 HOH HOH . H 4 HOH B 45 345 346 HOH HOH . H 4 HOH B 46 346 351 HOH HOH . H 4 HOH B 47 347 336 HOH HOH . H 4 HOH B 48 348 348 HOH HOH . H 4 HOH B 49 349 354 HOH HOH . H 4 HOH B 50 350 356 HOH HOH . H 4 HOH B 51 351 355 HOH HOH . H 4 HOH B 52 352 358 HOH HOH . H 4 HOH B 53 353 361 HOH HOH . H 4 HOH B 54 354 353 HOH HOH . H 4 HOH B 55 355 357 HOH HOH . H 4 HOH B 56 356 352 HOH HOH . H 4 HOH B 57 357 362 HOH HOH . H 4 HOH B 58 358 366 HOH HOH . H 4 HOH B 59 359 360 HOH HOH . H 4 HOH B 60 360 359 HOH HOH . H 4 HOH B 61 361 368 HOH HOH . H 4 HOH B 62 362 363 HOH HOH . H 4 HOH B 63 363 350 HOH HOH . H 4 HOH B 64 364 365 HOH HOH . H 4 HOH B 65 365 364 HOH HOH . H 4 HOH B 66 366 369 HOH HOH . H 4 HOH B 67 367 367 HOH HOH . H 4 HOH B 68 368 370 HOH HOH . H 4 HOH B 69 369 371 HOH HOH . H 4 HOH B 70 370 373 HOH HOH . H 4 HOH B 71 371 372 HOH HOH . H 4 HOH B 72 372 374 HOH HOH . H 4 HOH B 73 373 375 HOH HOH . H 4 HOH B 74 374 376 HOH HOH . H 4 HOH B 75 375 377 HOH HOH . H 4 HOH B 76 376 378 HOH HOH . H 4 HOH B 77 377 379 HOH HOH . H 4 HOH B 78 378 380 HOH HOH . H 4 HOH B 79 379 381 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 39.764 _atom_site.Cartn_y -31.026 _atom_site.Cartn_z 20.848 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #