data_6E3E # _model_server_result.job_id 2UjfZ5B3YjZ57a7aONQAjA _model_server_result.datetime_utc '2025-01-10 12:53:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 6E3E # _exptl.entry_id 6E3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6E3E _cell.length_a 99.661 _cell.length_b 99.661 _cell.length_c 125.28 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 305 n n C1 H11 MPD sing 306 n n C1 H12 MPD sing 307 n n C1 H13 MPD sing 308 n n C2 O2 MPD sing 309 n n C2 CM MPD sing 310 n n C2 C3 MPD sing 311 n n O2 HO2 MPD sing 312 n n CM HM1 MPD sing 313 n n CM HM2 MPD sing 314 n n CM HM3 MPD sing 315 n n C3 C4 MPD sing 316 n n C3 H31 MPD sing 317 n n C3 H32 MPD sing 318 n n C4 O4 MPD sing 319 n n C4 C5 MPD sing 320 n n C4 H4 MPD sing 321 n n O4 HO4 MPD sing 322 n n C5 H51 MPD sing 323 n n C5 H52 MPD sing 324 n n C5 H53 MPD sing 325 n n # _atom_sites.entry_id 6E3E _atom_sites.fract_transf_matrix[1][1] 0.010034 _atom_sites.fract_transf_matrix[1][2] 0.005793 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 501 598 SO4 SO4 . D 3 MPD A 1 502 599 MPD MPD . E 4 HQ7 A 1 503 600 HQ7 LIG . F 2 SO4 B 1 501 598 SO4 SO4 . G 3 MPD B 1 502 599 MPD MPD . H 4 HQ7 B 1 503 600 HQ7 LIG . I 5 HOH A 1 601 693 HOH HOH . I 5 HOH A 2 602 604 HOH HOH . I 5 HOH A 3 603 667 HOH HOH . I 5 HOH A 4 604 706 HOH HOH . I 5 HOH A 5 605 695 HOH HOH . I 5 HOH A 6 606 603 HOH HOH . I 5 HOH A 7 607 716 HOH HOH . I 5 HOH A 8 608 618 HOH HOH . I 5 HOH A 9 609 674 HOH HOH . I 5 HOH A 10 610 607 HOH HOH . I 5 HOH A 11 611 622 HOH HOH . I 5 HOH A 12 612 707 HOH HOH . I 5 HOH A 13 613 675 HOH HOH . I 5 HOH A 14 614 711 HOH HOH . I 5 HOH A 15 615 616 HOH HOH . I 5 HOH A 16 616 619 HOH HOH . I 5 HOH A 17 617 601 HOH HOH . I 5 HOH A 18 618 700 HOH HOH . I 5 HOH A 19 619 626 HOH HOH . I 5 HOH A 20 620 613 HOH HOH . I 5 HOH A 21 621 609 HOH HOH . I 5 HOH A 22 622 625 HOH HOH . I 5 HOH A 23 623 694 HOH HOH . I 5 HOH A 24 624 605 HOH HOH . I 5 HOH A 25 625 692 HOH HOH . I 5 HOH A 26 626 611 HOH HOH . I 5 HOH A 27 627 631 HOH HOH . I 5 HOH A 28 628 713 HOH HOH . I 5 HOH A 29 629 701 HOH HOH . I 5 HOH A 30 630 670 HOH HOH . I 5 HOH A 31 631 697 HOH HOH . I 5 HOH A 32 632 698 HOH HOH . I 5 HOH A 33 633 624 HOH HOH . I 5 HOH A 34 634 614 HOH HOH . I 5 HOH A 35 635 629 HOH HOH . I 5 HOH A 36 636 714 HOH HOH . I 5 HOH A 37 637 608 HOH HOH . I 5 HOH A 38 638 710 HOH HOH . I 5 HOH A 39 639 610 HOH HOH . I 5 HOH A 40 640 668 HOH HOH . I 5 HOH A 41 641 615 HOH HOH . I 5 HOH A 42 642 623 HOH HOH . I 5 HOH A 43 643 696 HOH HOH . I 5 HOH A 44 644 671 HOH HOH . I 5 HOH A 45 645 669 HOH HOH . I 5 HOH A 46 646 606 HOH HOH . I 5 HOH A 47 647 621 HOH HOH . I 5 HOH A 48 648 715 HOH HOH . I 5 HOH A 49 649 617 HOH HOH . I 5 HOH A 50 650 699 HOH HOH . I 5 HOH A 51 651 612 HOH HOH . I 5 HOH A 52 652 666 HOH HOH . J 5 HOH B 1 601 659 HOH HOH . J 5 HOH B 2 602 630 HOH HOH . J 5 HOH B 3 603 653 HOH HOH . J 5 HOH B 4 604 628 HOH HOH . J 5 HOH B 5 605 704 HOH HOH . J 5 HOH B 6 606 680 HOH HOH . J 5 HOH B 7 607 660 HOH HOH . J 5 HOH B 8 608 678 HOH HOH . J 5 HOH B 9 609 679 HOH HOH . J 5 HOH B 10 610 655 HOH HOH . J 5 HOH B 11 611 656 HOH HOH . J 5 HOH B 12 612 642 HOH HOH . J 5 HOH B 13 613 661 HOH HOH . J 5 HOH B 14 614 685 HOH HOH . J 5 HOH B 15 615 673 HOH HOH . J 5 HOH B 16 616 644 HOH HOH . J 5 HOH B 17 617 682 HOH HOH . J 5 HOH B 18 618 602 HOH HOH . J 5 HOH B 19 619 705 HOH HOH . J 5 HOH B 20 620 681 HOH HOH . J 5 HOH B 21 621 633 HOH HOH . J 5 HOH B 22 622 641 HOH HOH . J 5 HOH B 23 623 709 HOH HOH . J 5 HOH B 24 624 636 HOH HOH . J 5 HOH B 25 625 663 HOH HOH . J 5 HOH B 26 626 654 HOH HOH . J 5 HOH B 27 627 708 HOH HOH . J 5 HOH B 28 628 691 HOH HOH . J 5 HOH B 29 629 657 HOH HOH . J 5 HOH B 30 630 689 HOH HOH . J 5 HOH B 31 631 684 HOH HOH . J 5 HOH B 32 632 643 HOH HOH . J 5 HOH B 33 633 635 HOH HOH . J 5 HOH B 34 634 638 HOH HOH . J 5 HOH B 35 635 647 HOH HOH . J 5 HOH B 36 636 687 HOH HOH . J 5 HOH B 37 637 649 HOH HOH . J 5 HOH B 38 638 672 HOH HOH . J 5 HOH B 39 639 712 HOH HOH . J 5 HOH B 40 640 634 HOH HOH . J 5 HOH B 41 641 677 HOH HOH . J 5 HOH B 42 642 632 HOH HOH . J 5 HOH B 43 643 664 HOH HOH . J 5 HOH B 44 644 662 HOH HOH . J 5 HOH B 45 645 651 HOH HOH . J 5 HOH B 46 646 676 HOH HOH . J 5 HOH B 47 647 646 HOH HOH . J 5 HOH B 48 648 690 HOH HOH . J 5 HOH B 49 649 686 HOH HOH . J 5 HOH B 50 650 648 HOH HOH . J 5 HOH B 51 651 639 HOH HOH . J 5 HOH B 52 652 658 HOH HOH . J 5 HOH B 53 653 637 HOH HOH . J 5 HOH B 54 654 688 HOH HOH . J 5 HOH B 55 655 665 HOH HOH . J 5 HOH B 56 656 702 HOH HOH . J 5 HOH B 57 657 645 HOH HOH . J 5 HOH B 58 658 650 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . G 3 -19.784 -6.609 23.271 1 104.27 ? C1 MPD 502 B 1 HETATM 2 C C2 MPD . . . G 3 -20.868 -5.689 22.709 1 112.03 ? C2 MPD 502 B 1 HETATM 3 O O2 MPD . . . G 3 -21.92 -5.495 23.67 1 96.39 ? O2 MPD 502 B 1 HETATM 4 C CM MPD . . . G 3 -20.262 -4.313 22.412 1 117.71 ? CM MPD 502 B 1 HETATM 5 C C3 MPD . . . G 3 -21.557 -6.339 21.499 1 112.8 ? C3 MPD 502 B 1 HETATM 6 C C4 MPD . . . G 3 -20.784 -6.31 20.171 1 124.22 ? C4 MPD 502 B 1 HETATM 7 O O4 MPD . . . G 3 -21.011 -7.544 19.479 1 115.44 ? O4 MPD 502 B 1 HETATM 8 C C5 MPD . . . G 3 -21.215 -5.154 19.251 1 124.52 ? C5 MPD 502 B 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #