data_6E3E # _model_server_result.job_id dqz48QpJwK_oaobAmr5egQ _model_server_result.datetime_utc '2024-10-10 16:30:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":503}' # _entry.id 6E3E # _exptl.entry_id 6E3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.532 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[(5R)-5-[(7-fluoro-1,1-dimethyl-2,3-dihydro-1H-inden-5-yl)carbamoyl]-2-methoxy-7,8-dihydro-1,6-naphthyridin-6(5H)-yl]-5-oxopentanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6E3E _cell.length_a 99.661 _cell.length_b 99.661 _cell.length_c 125.28 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C26 H30 F N3 O5' _chem_comp.formula_weight 483.532 _chem_comp.id HQ7 _chem_comp.mon_nstd_flag . _chem_comp.name '5-[(5R)-5-[(7-fluoro-1,1-dimethyl-2,3-dihydro-1H-inden-5-yl)carbamoyl]-2-methoxy-7,8-dihydro-1,6-naphthyridin-6(5H)-yl]-5-oxopentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C29 HQ7 sing 152 n n C28 C27 HQ7 sing 153 n n O2 C1 HQ7 sing 154 n n O2 C3 HQ7 sing 155 n n C4 C3 HQ7 doub 156 n y C4 C5 HQ7 sing 157 n y C29 C30 HQ7 sing 158 n n C3 N13 HQ7 sing 159 n y C5 C6 HQ7 doub 160 n y C27 C26 HQ7 doub 161 n y C27 C33 HQ7 sing 162 n y C26 C25 HQ7 sing 163 n y C31 C30 HQ7 sing 164 n n C30 C33 HQ7 sing 165 n n C30 C32 HQ7 sing 166 n n N13 C12 HQ7 doub 167 n y C33 C34 HQ7 doub 168 n y C6 C12 HQ7 sing 169 n y C6 C7 HQ7 sing 170 n n N24 C25 HQ7 sing 171 n n N24 C22 HQ7 sing 172 n n C25 C36 HQ7 doub 173 n y C12 C11 HQ7 sing 174 n n C7 C22 HQ7 sing 175 n n C7 N9 HQ7 sing 176 n n C22 O23 HQ7 doub 177 n n C34 C36 HQ7 sing 178 n y C34 F35 HQ7 sing 179 n n N9 C10 HQ7 sing 180 n n N9 C14 HQ7 sing 181 n n C11 C10 HQ7 sing 182 n n O15 C14 HQ7 doub 183 n n C14 C16 HQ7 sing 184 n n C16 C17 HQ7 sing 185 n n C17 C18 HQ7 sing 186 n n C18 C19 HQ7 sing 187 n n O21 C19 HQ7 doub 188 n n C19 O20 HQ7 sing 189 n n C4 H1 HQ7 sing 190 n n C5 H2 HQ7 sing 191 n n C7 H3 HQ7 sing 192 n n C10 H4 HQ7 sing 193 n n C10 H5 HQ7 sing 194 n n C17 H6 HQ7 sing 195 n n C17 H7 HQ7 sing 196 n n C26 H8 HQ7 sing 197 n n C28 H9 HQ7 sing 198 n n C28 H10 HQ7 sing 199 n n C1 H11 HQ7 sing 200 n n C1 H12 HQ7 sing 201 n n C1 H13 HQ7 sing 202 n n C11 H14 HQ7 sing 203 n n C11 H15 HQ7 sing 204 n n C16 H16 HQ7 sing 205 n n C16 H17 HQ7 sing 206 n n C18 H18 HQ7 sing 207 n n C18 H19 HQ7 sing 208 n n O20 H20 HQ7 sing 209 n n N24 H21 HQ7 sing 210 n n C29 H22 HQ7 sing 211 n n C29 H23 HQ7 sing 212 n n C31 H24 HQ7 sing 213 n n C31 H25 HQ7 sing 214 n n C31 H26 HQ7 sing 215 n n C32 H27 HQ7 sing 216 n n C32 H28 HQ7 sing 217 n n C32 H29 HQ7 sing 218 n n C36 H30 HQ7 sing 219 n n # _atom_sites.entry_id 6E3E _atom_sites.fract_transf_matrix[1][1] 0.010034 _atom_sites.fract_transf_matrix[1][2] 0.005793 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 501 598 SO4 SO4 . D 3 MPD A 1 502 599 MPD MPD . E 4 HQ7 A 1 503 600 HQ7 LIG . F 2 SO4 B 1 501 598 SO4 SO4 . G 3 MPD B 1 502 599 MPD MPD . H 4 HQ7 B 1 503 600 HQ7 LIG . I 5 HOH A 1 601 693 HOH HOH . I 5 HOH A 2 602 604 HOH HOH . I 5 HOH A 3 603 667 HOH HOH . I 5 HOH A 4 604 706 HOH HOH . I 5 HOH A 5 605 695 HOH HOH . I 5 HOH A 6 606 603 HOH HOH . I 5 HOH A 7 607 716 HOH HOH . I 5 HOH A 8 608 618 HOH HOH . I 5 HOH A 9 609 674 HOH HOH . I 5 HOH A 10 610 607 HOH HOH . I 5 HOH A 11 611 622 HOH HOH . I 5 HOH A 12 612 707 HOH HOH . I 5 HOH A 13 613 675 HOH HOH . I 5 HOH A 14 614 711 HOH HOH . I 5 HOH A 15 615 616 HOH HOH . I 5 HOH A 16 616 619 HOH HOH . I 5 HOH A 17 617 601 HOH HOH . I 5 HOH A 18 618 700 HOH HOH . I 5 HOH A 19 619 626 HOH HOH . I 5 HOH A 20 620 613 HOH HOH . I 5 HOH A 21 621 609 HOH HOH . I 5 HOH A 22 622 625 HOH HOH . I 5 HOH A 23 623 694 HOH HOH . I 5 HOH A 24 624 605 HOH HOH . I 5 HOH A 25 625 692 HOH HOH . I 5 HOH A 26 626 611 HOH HOH . I 5 HOH A 27 627 631 HOH HOH . I 5 HOH A 28 628 713 HOH HOH . I 5 HOH A 29 629 701 HOH HOH . I 5 HOH A 30 630 670 HOH HOH . I 5 HOH A 31 631 697 HOH HOH . I 5 HOH A 32 632 698 HOH HOH . I 5 HOH A 33 633 624 HOH HOH . I 5 HOH A 34 634 614 HOH HOH . I 5 HOH A 35 635 629 HOH HOH . I 5 HOH A 36 636 714 HOH HOH . I 5 HOH A 37 637 608 HOH HOH . I 5 HOH A 38 638 710 HOH HOH . I 5 HOH A 39 639 610 HOH HOH . I 5 HOH A 40 640 668 HOH HOH . I 5 HOH A 41 641 615 HOH HOH . I 5 HOH A 42 642 623 HOH HOH . I 5 HOH A 43 643 696 HOH HOH . I 5 HOH A 44 644 671 HOH HOH . I 5 HOH A 45 645 669 HOH HOH . I 5 HOH A 46 646 606 HOH HOH . I 5 HOH A 47 647 621 HOH HOH . I 5 HOH A 48 648 715 HOH HOH . I 5 HOH A 49 649 617 HOH HOH . I 5 HOH A 50 650 699 HOH HOH . I 5 HOH A 51 651 612 HOH HOH . I 5 HOH A 52 652 666 HOH HOH . J 5 HOH B 1 601 659 HOH HOH . J 5 HOH B 2 602 630 HOH HOH . J 5 HOH B 3 603 653 HOH HOH . J 5 HOH B 4 604 628 HOH HOH . J 5 HOH B 5 605 704 HOH HOH . J 5 HOH B 6 606 680 HOH HOH . J 5 HOH B 7 607 660 HOH HOH . J 5 HOH B 8 608 678 HOH HOH . J 5 HOH B 9 609 679 HOH HOH . J 5 HOH B 10 610 655 HOH HOH . J 5 HOH B 11 611 656 HOH HOH . J 5 HOH B 12 612 642 HOH HOH . J 5 HOH B 13 613 661 HOH HOH . J 5 HOH B 14 614 685 HOH HOH . J 5 HOH B 15 615 673 HOH HOH . J 5 HOH B 16 616 644 HOH HOH . J 5 HOH B 17 617 682 HOH HOH . J 5 HOH B 18 618 602 HOH HOH . J 5 HOH B 19 619 705 HOH HOH . J 5 HOH B 20 620 681 HOH HOH . J 5 HOH B 21 621 633 HOH HOH . J 5 HOH B 22 622 641 HOH HOH . J 5 HOH B 23 623 709 HOH HOH . J 5 HOH B 24 624 636 HOH HOH . J 5 HOH B 25 625 663 HOH HOH . J 5 HOH B 26 626 654 HOH HOH . J 5 HOH B 27 627 708 HOH HOH . J 5 HOH B 28 628 691 HOH HOH . J 5 HOH B 29 629 657 HOH HOH . J 5 HOH B 30 630 689 HOH HOH . J 5 HOH B 31 631 684 HOH HOH . J 5 HOH B 32 632 643 HOH HOH . J 5 HOH B 33 633 635 HOH HOH . J 5 HOH B 34 634 638 HOH HOH . J 5 HOH B 35 635 647 HOH HOH . J 5 HOH B 36 636 687 HOH HOH . J 5 HOH B 37 637 649 HOH HOH . J 5 HOH B 38 638 672 HOH HOH . J 5 HOH B 39 639 712 HOH HOH . J 5 HOH B 40 640 634 HOH HOH . J 5 HOH B 41 641 677 HOH HOH . J 5 HOH B 42 642 632 HOH HOH . J 5 HOH B 43 643 664 HOH HOH . J 5 HOH B 44 644 662 HOH HOH . J 5 HOH B 45 645 651 HOH HOH . J 5 HOH B 46 646 676 HOH HOH . J 5 HOH B 47 647 646 HOH HOH . J 5 HOH B 48 648 690 HOH HOH . J 5 HOH B 49 649 686 HOH HOH . J 5 HOH B 50 650 648 HOH HOH . J 5 HOH B 51 651 639 HOH HOH . J 5 HOH B 52 652 658 HOH HOH . J 5 HOH B 53 653 637 HOH HOH . J 5 HOH B 54 654 688 HOH HOH . J 5 HOH B 55 655 665 HOH HOH . J 5 HOH B 56 656 702 HOH HOH . J 5 HOH B 57 657 645 HOH HOH . J 5 HOH B 58 658 650 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 HQ7 . . . H 4 -20.681 -22.322 29.827 1 53.96 ? C4 HQ7 503 B 1 HETATM 2 C C5 HQ7 . . . H 4 -20.555 -21.116 29.139 1 52.64 ? C5 HQ7 503 B 1 HETATM 3 C C6 HQ7 . . . H 4 -20.137 -21.166 27.799 1 54.27 ? C6 HQ7 503 B 1 HETATM 4 C C7 HQ7 . . . H 4 -20.069 -20.001 26.895 1 56.31 ? C7 HQ7 503 B 1 HETATM 5 C C10 HQ7 . . . H 4 -18.471 -21.338 25.609 1 53.27 ? C10 HQ7 503 B 1 HETATM 6 C C17 HQ7 . . . H 4 -18.004 -17.894 22.992 1 68.84 ? C17 HQ7 503 B 1 HETATM 7 C C22 HQ7 . . . H 4 -21.495 -19.808 26.633 1 55.08 ? C22 HQ7 503 B 1 HETATM 8 C C26 HQ7 . . . H 4 -24.327 -18.908 28.754 1 54.07 ? C26 HQ7 503 B 1 HETATM 9 C C28 HQ7 . . . H 4 -26.61 -18.731 30.049 1 53.7 ? C28 HQ7 503 B 1 HETATM 10 C C1 HQ7 . . . H 4 -21.176 -25.83 29.214 1 50.07 ? C1 HQ7 503 B 1 HETATM 11 O O2 HQ7 . . . H 4 -20.609 -24.682 29.855 1 54.59 ? O2 HQ7 503 B 1 HETATM 12 C C3 HQ7 . . . H 4 -20.451 -23.531 29.167 1 52.54 ? C3 HQ7 503 B 1 HETATM 13 N N9 HQ7 . . . H 4 -19.118 -20.007 25.872 1 57.04 ? N9 HQ7 503 B 1 HETATM 14 C C11 HQ7 . . . H 4 -19.474 -22.499 25.751 1 53.5 ? C11 HQ7 503 B 1 HETATM 15 C C12 HQ7 . . . H 4 -19.934 -22.416 27.197 1 57.73 ? C12 HQ7 503 B 1 HETATM 16 N N13 HQ7 . . . H 4 -20.08 -23.554 27.895 1 55.94 ? N13 HQ7 503 B 1 HETATM 17 C C14 HQ7 . . . H 4 -18.877 -18.898 25.151 1 62.25 ? C14 HQ7 503 B 1 HETATM 18 O O15 HQ7 . . . H 4 -19.47 -17.869 25.444 1 59.53 ? O15 HQ7 503 B 1 HETATM 19 C C16 HQ7 . . . H 4 -17.826 -18.959 24.051 1 62.36 ? C16 HQ7 503 B 1 HETATM 20 C C18 HQ7 . . . H 4 -16.753 -17.888 22.12 1 80.11 ? C18 HQ7 503 B 1 HETATM 21 C C19 HQ7 . . . H 4 -16.612 -16.527 21.48 1 88.29 ? C19 HQ7 503 B 1 HETATM 22 O O20 HQ7 . . . H 4 -17.104 -16.313 20.239 1 91.22 ? O20 HQ7 503 B 1 HETATM 23 O O21 HQ7 . . . H 4 -16.062 -15.633 22.093 1 88.22 ? O21 HQ7 503 B 1 HETATM 24 O O23 HQ7 . . . H 4 -21.948 -20.277 25.583 1 50.66 ? O23 HQ7 503 B 1 HETATM 25 N N24 HQ7 . . . H 4 -22.268 -19.17 27.562 1 52.54 ? N24 HQ7 503 B 1 HETATM 26 C C25 HQ7 . . . H 4 -23.672 -19.119 27.541 1 53.55 ? C25 HQ7 503 B 1 HETATM 27 C C27 HQ7 . . . H 4 -25.713 -18.985 28.846 1 56.98 ? C27 HQ7 503 B 1 HETATM 28 C C29 HQ7 . . . H 4 -28.031 -18.584 29.421 1 55.22 ? C29 HQ7 503 B 1 HETATM 29 C C30 HQ7 . . . H 4 -27.962 -19.289 28.043 1 54.18 ? C30 HQ7 503 B 1 HETATM 30 C C31 HQ7 . . . H 4 -28.506 -20.721 28.114 1 55.49 ? C31 HQ7 503 B 1 HETATM 31 C C32 HQ7 . . . H 4 -28.833 -18.545 27.014 1 50.75 ? C32 HQ7 503 B 1 HETATM 32 C C33 HQ7 . . . H 4 -26.467 -19.296 27.705 1 53.53 ? C33 HQ7 503 B 1 HETATM 33 C C34 HQ7 . . . H 4 -25.786 -19.552 26.511 1 51.54 ? C34 HQ7 503 B 1 HETATM 34 F F35 HQ7 . . . H 4 -26.425 -19.86 25.376 1 52.05 ? F35 HQ7 503 B 1 HETATM 35 C C36 HQ7 . . . H 4 -24.425 -19.498 26.436 1 49 ? C36 HQ7 503 B 1 # _model_server_stats.io_time_ms 191 _model_server_stats.parse_time_ms 158 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #