data_6E3M # _model_server_result.job_id nblRlDT5EueUFStp-p9LyQ _model_server_result.datetime_utc '2024-11-05 01:58:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 6E3M # _exptl.entry_id 6E3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6E3M _cell.length_a 75.459 _cell.length_b 75.459 _cell.length_c 120.567 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 47 A HIS 41 1_555 B MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc2 A OE2 GLU 74 A GLU 80 1_555 C MN MN . A MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc3 A OD2 ASP 102 A ASP 108 1_555 B MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc4 A OD1 ASP 102 A ASP 108 1_555 C MN MN . A MN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc5 A OE2 GLU 113 A GLU 119 1_555 B MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc6 A O ILE 114 A ILE 120 1_555 B MN MN . A MN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc7 B MN MN . A MN 901 1_555 E OAF HOG . A HOG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc8 B MN MN . A MN 901 1_555 E OAE HOG . A HOG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc9 C MN MN . A MN 902 1_555 E OAB HOG . A HOG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? metalc ? metalc10 C MN MN . A MN 902 1_555 E OAF HOG . A HOG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc11 C MN MN . A MN 902 1_555 F O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc12 C MN MN . A MN 902 1_555 F O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6E3M _atom_sites.fract_transf_matrix[1][1] 0.013252 _atom_sites.fract_transf_matrix[1][2] 0.007651 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 901 901 MN MN . C 2 MN A 1 902 902 MN MN . D 3 EDO A 1 903 1 EDO EDO . E 4 HOG A 1 904 1 HOG DRG . F 5 HOH A 1 1001 2 HOH HOH . F 5 HOH A 2 1002 30 HOH HOH . F 5 HOH A 3 1003 19 HOH HOH . F 5 HOH A 4 1004 1 HOH HOH . F 5 HOH A 5 1005 5 HOH HOH . F 5 HOH A 6 1006 4 HOH HOH . F 5 HOH A 7 1007 18 HOH HOH . F 5 HOH A 8 1008 22 HOH HOH . F 5 HOH A 9 1009 16 HOH HOH . F 5 HOH A 10 1010 21 HOH HOH . F 5 HOH A 11 1011 11 HOH HOH . F 5 HOH A 12 1012 23 HOH HOH . F 5 HOH A 13 1013 28 HOH HOH . F 5 HOH A 14 1014 27 HOH HOH . F 5 HOH A 15 1015 9 HOH HOH . F 5 HOH A 16 1016 7 HOH HOH . F 5 HOH A 17 1017 17 HOH HOH . F 5 HOH A 18 1018 3 HOH HOH . F 5 HOH A 19 1019 10 HOH HOH . F 5 HOH A 20 1020 12 HOH HOH . F 5 HOH A 21 1021 29 HOH HOH . F 5 HOH A 22 1022 26 HOH HOH . F 5 HOH A 23 1023 8 HOH HOH . F 5 HOH A 24 1024 25 HOH HOH . F 5 HOH A 25 1025 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 -10.761 15.754 20.332 0.5 55.43 ? C1 EDO 903 A 1 HETATM 2 O O1 EDO . . . D 3 -11.685 15.717 19.252 0.5 55.68 ? O1 EDO 903 A 1 HETATM 3 C C2 EDO . . . D 3 -9.727 16.848 20.102 0.5 54.79 ? C2 EDO 903 A 1 HETATM 4 O O2 EDO . . . D 3 -8.865 16.965 21.266 0.5 52.25 ? O2 EDO 903 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 4 #