data_6E3S # _model_server_result.job_id 5KKSGs6xHf73DVO7vTzdPQ _model_server_result.datetime_utc '2024-11-22 08:27:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e3s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6E3S # _exptl.entry_id 6E3S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 383.342 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{[(1S)-2,2-difluoro-1-hydroxy-7-(methylsulfonyl)-2,3-dihydro-1H-inden-4-yl]oxy}-5-fluorobenzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.43 _cell.angle_gamma 90 _cell.entry_id 6E3S _cell.length_a 49.009 _cell.length_b 97.895 _cell.length_c 77.965 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E3S _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H12 F3 N O4 S' _chem_comp.formula_weight 383.342 _chem_comp.id 79A _chem_comp.mon_nstd_flag . _chem_comp.name 3-{[(1S)-2,2-difluoro-1-hydroxy-7-(methylsulfonyl)-2,3-dihydro-1H-inden-4-yl]oxy}-5-fluorobenzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PT2385 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F3 C11 79A sing 1 n n F2 C11 79A sing 2 n n C11 C15 79A sing 3 n n C11 C12 79A sing 4 n n C15 C14 79A sing 5 n n O1 C8 79A sing 6 n n O1 C1 79A sing 7 n n C12 O4 79A sing 8 n n C12 C13 79A sing 9 n n C9 C8 79A doub 10 n y C9 C10 79A sing 11 n y C14 C1 79A doub 12 n y C14 C13 79A sing 13 n y C8 C7 79A sing 14 n y F1 C10 79A sing 15 n n C10 C5 79A doub 16 n y C1 C2 79A sing 17 n y C13 C4 79A doub 18 n y C7 C6 79A doub 19 n y C5 C6 79A sing 20 n y C6 C17 79A sing 21 n n C2 C3 79A doub 22 n y O2 S1 79A doub 23 n n C4 C3 79A sing 24 n y C4 S1 79A sing 25 n n C17 N1 79A trip 26 n n S1 C16 79A sing 27 n n S1 O3 79A doub 28 n n C7 H1 79A sing 29 n n C9 H2 79A sing 30 n n C5 H3 79A sing 31 n n C15 H4 79A sing 32 n n C15 H5 79A sing 33 n n C12 H6 79A sing 34 n n O4 H7 79A sing 35 n n C16 H8 79A sing 36 n n C16 H9 79A sing 37 n n C16 H10 79A sing 38 n n C3 H11 79A sing 39 n n C2 H12 79A sing 40 n n # _atom_sites.entry_id 6E3S _atom_sites.fract_transf_matrix[1][1] 0.020404 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006405 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 79A _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 79A _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 79A . . . C 3 173.36 -123.196 170.364 1 100.28 ? N1 79A 401 B 1 HETATM 2 C C17 79A . . . C 3 174.023 -122.557 169.697 1 85.56 ? C17 79A 401 B 1 HETATM 3 C C6 79A . . . C 3 174.897 -121.791 168.74 1 80.02 ? C6 79A 401 B 1 HETATM 4 C C7 79A . . . C 3 175.364 -122.607 167.578 1 92.59 ? C7 79A 401 B 1 HETATM 5 C C8 79A . . . C 3 176.222 -121.995 166.541 1 95.83 ? C8 79A 401 B 1 HETATM 6 C C9 79A . . . C 3 176.656 -120.559 166.651 1 88.64 ? C9 79A 401 B 1 HETATM 7 C C10 79A . . . C 3 176.183 -119.717 167.824 1 85.45 ? C10 79A 401 B 1 HETATM 8 F F1 79A . . . C 3 176.575 -118.427 167.932 1 106.81 ? F1 79A 401 B 1 HETATM 9 C C5 79A . . . C 3 175.291 -120.327 168.889 1 68.95 ? C5 79A 401 B 1 HETATM 10 O O1 79A . . . C 3 176.642 -122.876 165.563 1 106.58 ? O1 79A 401 B 1 HETATM 11 C C1 79A . . . C 3 175.956 -122.736 164.398 1 103.82 ? C1 79A 401 B 1 HETATM 12 C C14 79A . . . C 3 176.553 -123.467 163.208 1 99.35 ? C14 79A 401 B 1 HETATM 13 C C15 79A . . . C 3 177.734 -124.323 163.098 1 104.44 ? C15 79A 401 B 1 HETATM 14 C C11 79A . . . C 3 177.905 -124.413 161.586 1 117.88 ? C11 79A 401 B 1 HETATM 15 F F3 79A . . . C 3 178.745 -123.422 161.328 1 128.77 ? F3 79A 401 B 1 HETATM 16 F F2 79A . . . C 3 178.153 -125.678 161.248 1 132.33 ? F2 79A 401 B 1 HETATM 17 C C13 79A . . . C 3 175.841 -123.349 161.931 1 108.51 ? C13 79A 401 B 1 HETATM 18 C C12 79A . . . C 3 176.56 -124.133 160.935 1 116.14 ? C12 79A 401 B 1 HETATM 19 O O4 79A . . . C 3 175.979 -125.384 160.806 1 117.92 ? O4 79A 401 B 1 HETATM 20 C C4 79A . . . C 3 174.575 -122.497 161.873 1 107.2 ? C4 79A 401 B 1 HETATM 21 S S1 79A . . . C 3 173.742 -122.307 160.361 1 102.52 ? S1 79A 401 B 1 HETATM 22 C C16 79A . . . C 3 174.771 -121.609 159.121 1 90.44 ? C16 79A 401 B 1 HETATM 23 O O3 79A . . . C 3 173.202 -123.584 160.007 1 107.04 ? O3 79A 401 B 1 HETATM 24 O O2 79A . . . C 3 172.692 -121.36 160.584 1 132.54 ? O2 79A 401 B 1 HETATM 25 C C3 79A . . . C 3 173.987 -121.774 163.065 1 108.21 ? C3 79A 401 B 1 HETATM 26 C C2 79A . . . C 3 174.705 -121.888 164.392 1 109.9 ? C2 79A 401 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #