data_6E4E # _model_server_result.job_id xBAb4FSUmc5jTCZysAfnwA _model_server_result.datetime_utc '2024-11-13 00:46:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6E4E # _exptl.entry_id 6E4E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6E4E _cell.length_a 79 _cell.length_b 79 _cell.length_c 108.93 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 275 n n PA O2A NAP sing 276 n n PA O5B NAP sing 277 n n PA O3 NAP sing 278 n n O2A HOA2 NAP sing 279 n n O5B C5B NAP sing 280 n n C5B C4B NAP sing 281 n n C5B H51A NAP sing 282 n n C5B H52A NAP sing 283 n n C4B O4B NAP sing 284 n n C4B C3B NAP sing 285 n n C4B H4B NAP sing 286 n n O4B C1B NAP sing 287 n n C3B O3B NAP sing 288 n n C3B C2B NAP sing 289 n n C3B H3B NAP sing 290 n n O3B HO3A NAP sing 291 n n C2B O2B NAP sing 292 n n C2B C1B NAP sing 293 n n C2B H2B NAP sing 294 n n O2B P2B NAP sing 295 n n C1B N9A NAP sing 296 n n C1B H1B NAP sing 297 n n N9A C8A NAP sing 298 n y N9A C4A NAP sing 299 n y C8A N7A NAP doub 300 n y C8A H8A NAP sing 301 n n N7A C5A NAP sing 302 n y C5A C6A NAP sing 303 n y C5A C4A NAP doub 304 n y C6A N6A NAP sing 305 n n C6A N1A NAP doub 306 n y N6A H61A NAP sing 307 n n N6A H62A NAP sing 308 n n N1A C2A NAP sing 309 n y C2A N3A NAP doub 310 n y C2A H2A NAP sing 311 n n N3A C4A NAP sing 312 n y O3 PN NAP sing 313 n n PN O1N NAP doub 314 n n PN O2N NAP sing 315 n n PN O5D NAP sing 316 n n O5D C5D NAP sing 317 n n C5D C4D NAP sing 318 n n C5D H51N NAP sing 319 n n C5D H52N NAP sing 320 n n C4D O4D NAP sing 321 n n C4D C3D NAP sing 322 n n C4D H4D NAP sing 323 n n O4D C1D NAP sing 324 n n C3D O3D NAP sing 325 n n C3D C2D NAP sing 326 n n C3D H3D NAP sing 327 n n O3D HO3N NAP sing 328 n n C2D O2D NAP sing 329 n n C2D C1D NAP sing 330 n n C2D H2D NAP sing 331 n n O2D HO2N NAP sing 332 n n C1D N1N NAP sing 333 n n C1D H1D NAP sing 334 n n N1N C2N NAP sing 335 n y N1N C6N NAP doub 336 n y C2N C3N NAP doub 337 n y C2N H2N NAP sing 338 n n C3N C7N NAP sing 339 n n C3N C4N NAP sing 340 n y C7N O7N NAP doub 341 n n C7N N7N NAP sing 342 n n N7N H71N NAP sing 343 n n N7N H72N NAP sing 344 n n C4N C5N NAP doub 345 n y C4N H4N NAP sing 346 n n C5N C6N NAP sing 347 n y C5N H5N NAP sing 348 n n C6N H6N NAP sing 349 n n P2B O1X NAP doub 350 n n P2B O2X NAP sing 351 n n P2B O3X NAP sing 352 n n O2X HOP2 NAP sing 353 n n O3X HOP3 NAP sing 354 n n # _atom_sites.entry_id 6E4E _atom_sites.fract_transf_matrix[1][1] 0.012658 _atom_sites.fract_transf_matrix[1][2] 0.007308 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 201 NAP NAP . C 3 MMV A 1 202 202 MMV MMV . D 4 HOH A 1 301 80 HOH HOH . D 4 HOH A 2 302 90 HOH HOH . D 4 HOH A 3 303 54 HOH HOH . D 4 HOH A 4 304 77 HOH HOH . D 4 HOH A 5 305 75 HOH HOH . D 4 HOH A 6 306 89 HOH HOH . D 4 HOH A 7 307 6 HOH HOH . D 4 HOH A 8 308 60 HOH HOH . D 4 HOH A 9 309 56 HOH HOH . D 4 HOH A 10 310 92 HOH HOH . D 4 HOH A 11 311 95 HOH HOH . D 4 HOH A 12 312 32 HOH HOH . D 4 HOH A 13 313 65 HOH HOH . D 4 HOH A 14 314 63 HOH HOH . D 4 HOH A 15 315 18 HOH HOH . D 4 HOH A 16 316 84 HOH HOH . D 4 HOH A 17 317 7 HOH HOH . D 4 HOH A 18 318 68 HOH HOH . D 4 HOH A 19 319 87 HOH HOH . D 4 HOH A 20 320 73 HOH HOH . D 4 HOH A 21 321 86 HOH HOH . D 4 HOH A 22 322 27 HOH HOH . D 4 HOH A 23 323 62 HOH HOH . D 4 HOH A 24 324 42 HOH HOH . D 4 HOH A 25 325 39 HOH HOH . D 4 HOH A 26 326 66 HOH HOH . D 4 HOH A 27 327 29 HOH HOH . D 4 HOH A 28 328 33 HOH HOH . D 4 HOH A 29 329 17 HOH HOH . D 4 HOH A 30 330 76 HOH HOH . D 4 HOH A 31 331 4 HOH HOH . D 4 HOH A 32 332 10 HOH HOH . D 4 HOH A 33 333 9 HOH HOH . D 4 HOH A 34 334 37 HOH HOH . D 4 HOH A 35 335 22 HOH HOH . D 4 HOH A 36 336 88 HOH HOH . D 4 HOH A 37 337 41 HOH HOH . D 4 HOH A 38 338 35 HOH HOH . D 4 HOH A 39 339 21 HOH HOH . D 4 HOH A 40 340 13 HOH HOH . D 4 HOH A 41 341 52 HOH HOH . D 4 HOH A 42 342 8 HOH HOH . D 4 HOH A 43 343 94 HOH HOH . D 4 HOH A 44 344 11 HOH HOH . D 4 HOH A 45 345 31 HOH HOH . D 4 HOH A 46 346 99 HOH HOH . D 4 HOH A 47 347 3 HOH HOH . D 4 HOH A 48 348 36 HOH HOH . D 4 HOH A 49 349 110 HOH HOH . D 4 HOH A 50 350 24 HOH HOH . D 4 HOH A 51 351 85 HOH HOH . D 4 HOH A 52 352 1 HOH HOH . D 4 HOH A 53 353 43 HOH HOH . D 4 HOH A 54 354 101 HOH HOH . D 4 HOH A 55 355 91 HOH HOH . D 4 HOH A 56 356 16 HOH HOH . D 4 HOH A 57 357 69 HOH HOH . D 4 HOH A 58 358 67 HOH HOH . D 4 HOH A 59 359 49 HOH HOH . D 4 HOH A 60 360 2 HOH HOH . D 4 HOH A 61 361 106 HOH HOH . D 4 HOH A 62 362 51 HOH HOH . D 4 HOH A 63 363 26 HOH HOH . D 4 HOH A 64 364 23 HOH HOH . D 4 HOH A 65 365 44 HOH HOH . D 4 HOH A 66 366 19 HOH HOH . D 4 HOH A 67 367 108 HOH HOH . D 4 HOH A 68 368 12 HOH HOH . D 4 HOH A 69 369 61 HOH HOH . D 4 HOH A 70 370 50 HOH HOH . D 4 HOH A 71 371 53 HOH HOH . D 4 HOH A 72 372 38 HOH HOH . D 4 HOH A 73 373 83 HOH HOH . D 4 HOH A 74 374 70 HOH HOH . D 4 HOH A 75 375 112 HOH HOH . D 4 HOH A 76 376 46 HOH HOH . D 4 HOH A 77 377 79 HOH HOH . D 4 HOH A 78 378 5 HOH HOH . D 4 HOH A 79 379 98 HOH HOH . D 4 HOH A 80 380 48 HOH HOH . D 4 HOH A 81 381 15 HOH HOH . D 4 HOH A 82 382 14 HOH HOH . D 4 HOH A 83 383 20 HOH HOH . D 4 HOH A 84 384 55 HOH HOH . D 4 HOH A 85 385 74 HOH HOH . D 4 HOH A 86 386 47 HOH HOH . D 4 HOH A 87 387 25 HOH HOH . D 4 HOH A 88 388 113 HOH HOH . D 4 HOH A 89 389 117 HOH HOH . D 4 HOH A 90 390 30 HOH HOH . D 4 HOH A 91 391 109 HOH HOH . D 4 HOH A 92 392 102 HOH HOH . D 4 HOH A 93 393 57 HOH HOH . D 4 HOH A 94 394 105 HOH HOH . D 4 HOH A 95 395 93 HOH HOH . D 4 HOH A 96 396 40 HOH HOH . D 4 HOH A 97 397 72 HOH HOH . D 4 HOH A 98 398 34 HOH HOH . D 4 HOH A 99 399 116 HOH HOH . D 4 HOH A 100 400 81 HOH HOH . D 4 HOH A 101 401 111 HOH HOH . D 4 HOH A 102 402 115 HOH HOH . D 4 HOH A 103 403 82 HOH HOH . D 4 HOH A 104 404 28 HOH HOH . D 4 HOH A 105 405 114 HOH HOH . D 4 HOH A 106 406 71 HOH HOH . D 4 HOH A 107 407 96 HOH HOH . D 4 HOH A 108 408 97 HOH HOH . D 4 HOH A 109 409 58 HOH HOH . D 4 HOH A 110 410 45 HOH HOH . D 4 HOH A 111 411 104 HOH HOH . D 4 HOH A 112 412 78 HOH HOH . D 4 HOH A 113 413 107 HOH HOH . D 4 HOH A 114 414 59 HOH HOH . D 4 HOH A 115 415 103 HOH HOH . D 4 HOH A 116 416 64 HOH HOH . D 4 HOH A 117 417 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 6.484 31.516 -6.663 1 24.23 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . B 2 6.833 30.261 -5.967 1 23.2 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . B 2 5.102 32.158 -6.493 1 25.59 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . B 2 7.641 32.576 -6.334 1 26.74 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . B 2 9 32.19 -6.575 1 21.64 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . B 2 9.822 33.184 -5.806 1 27.1 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . B 2 9.562 33.034 -4.393 1 31.97 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . B 2 11.331 33.052 -5.959 1 31.87 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . B 2 11.748 33.664 -7.18 1 25.32 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . B 2 11.746 33.851 -4.725 1 30.27 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . B 2 11.521 35.262 -4.893 1 30.64 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . B 2 10.736 33.367 -3.683 1 27.85 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . B 2 11.2 32.206 -2.956 1 32.99 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . B 2 10.837 30.894 -3.117 1 35.66 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . B 2 11.499 30.062 -2.35 1 34.58 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . B 2 12.35 30.885 -1.628 1 36.86 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . B 2 13.301 30.623 -0.624 1 39.27 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . B 2 13.621 29.395 -0.207 1 39.38 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . B 2 13.948 31.679 -0.077 1 44.77 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . B 2 13.668 32.908 -0.524 1 33.37 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . B 2 12.803 33.279 -1.475 1 39.44 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . B 2 12.171 32.212 -1.988 1 34.64 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . B 2 6.684 31.293 -8.228 1 26.16 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . B 2 6.39 30.062 -9.209 1 26.69 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . B 2 6.721 30.505 -10.582 1 26.23 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . B 2 7.035 28.86 -8.637 1 25.05 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . B 2 4.808 29.973 -9.124 1 24.41 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . B 2 4.003 31.008 -9.702 1 23.73 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . B 2 3.051 30.394 -10.692 1 27.61 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . B 2 2.167 29.479 -9.993 1 24.02 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . B 2 2.134 31.393 -11.385 1 24.22 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . B 2 1.681 30.901 -12.645 1 23.26 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . B 2 0.949 31.446 -10.427 1 22.06 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . B 2 -0.252 31.879 -11.054 1 24.29 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . B 2 0.849 29.965 -10.068 1 21.43 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . B 2 0.149 29.691 -8.718 1 29.45 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . B 2 -0.897 28.85 -8.743 1 24.32 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . B 2 -1.418 28.356 -7.56 1 23.76 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . B 2 -2.524 27.334 -7.567 1 24.13 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . B 2 -2.87 26.805 -6.496 1 24.47 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . B 2 -3.05 26.99 -8.743 1 18.96 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . B 2 -0.874 28.8 -6.358 1 24.68 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . B 2 0.161 29.717 -6.363 1 35.08 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . B 2 0.667 30.158 -7.563 1 33.97 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . B 2 12.728 36.303 -5.3 1 31.6 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . B 2 13.112 35.907 -6.705 1 36.27 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . B 2 11.971 37.645 -5.172 1 27.51 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . B 2 13.803 36.023 -4.302 1 23.97 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #