data_6E4T # _model_server_result.job_id u4MoASDRzxpDdXcLRSdcEg _model_server_result.datetime_utc '2025-01-10 10:44:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e4t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6E4T # _exptl.entry_id 6E4T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 517.912 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-O-{6-chloro-5-[4-(1-hydroxycyclobutyl)phenyl]-1H-indole-3-carbonyl}-beta-D-glucopyranuronic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6E4T _cell.length_a 123.61 _cell.length_b 123.61 _cell.length_c 402.55 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E4T _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -61.805 -107.0494 -67.091667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 B C ARG 41 B ARG 107 1_555 B N SEP 42 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 B C SEP 42 B SEP 108 1_555 B N GLN 43 B GLN 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? # _chem_comp.formula 'C25 H24 Cl N O9' _chem_comp.formula_weight 517.912 _chem_comp.id HTV _chem_comp.mon_nstd_flag . _chem_comp.name '1-O-{6-chloro-5-[4-(1-hydroxycyclobutyl)phenyl]-1H-indole-3-carbonyl}-beta-D-glucopyranuronic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C21 HTV doub 233 n n O4 C21 HTV sing 234 n n C21 C20 HTV sing 235 n n C20 O3 HTV sing 236 n n C20 C19 HTV sing 237 n n O3 C16 HTV sing 238 n n C25 C24 HTV sing 239 n n C25 C22 HTV sing 240 n n C1 C2 HTV doub 241 n y C1 C6 HTV sing 242 n y C2 C3 HTV sing 243 n y O6 C19 HTV sing 244 n n C19 C18 HTV sing 245 n n C13 N1 HTV sing 246 n y C13 C14 HTV doub 247 n y N1 C10 HTV sing 248 n y O2 C16 HTV sing 249 n n O2 C15 HTV sing 250 n n C14 C9 HTV sing 251 n y C14 C15 HTV sing 252 n n C10 C9 HTV doub 253 n y C10 C11 HTV sing 254 n y C16 C17 HTV sing 255 n n C9 C8 HTV sing 256 n y C15 O1 HTV doub 257 n n C11 C12 HTV doub 258 n y C24 C23 HTV sing 259 n n C8 C7 HTV doub 260 n y C12 C7 HTV sing 261 n y C12 CL1 HTV sing 262 n n C7 C6 HTV sing 263 n n C6 C5 HTV doub 264 n y C3 C22 HTV sing 265 n n C3 C4 HTV doub 266 n y C22 C23 HTV sing 267 n n C22 O9 HTV sing 268 n n C18 C17 HTV sing 269 n n C18 O7 HTV sing 270 n n C17 O8 HTV sing 271 n n C5 C4 HTV sing 272 n y C4 H1 HTV sing 273 n n C13 H2 HTV sing 274 n n C20 H3 HTV sing 275 n n C8 H4 HTV sing 276 n n C18 H5 HTV sing 277 n n C16 H6 HTV sing 278 n n C19 H7 HTV sing 279 n n C1 H8 HTV sing 280 n n C2 H9 HTV sing 281 n n C5 H10 HTV sing 282 n n C11 H11 HTV sing 283 n n N1 H12 HTV sing 284 n n C17 H13 HTV sing 285 n n O4 H14 HTV sing 286 n n O6 H15 HTV sing 287 n n O7 H16 HTV sing 288 n n O8 H17 HTV sing 289 n n C23 H18 HTV sing 290 n n C23 H19 HTV sing 291 n n C24 H20 HTV sing 292 n n C24 H21 HTV sing 293 n n C25 H22 HTV sing 294 n n C25 H23 HTV sing 295 n n O9 H24 HTV sing 296 n n # _atom_sites.entry_id 6E4T _atom_sites.fract_transf_matrix[1][1] 0.00809 _atom_sites.fract_transf_matrix[1][2] 0.004671 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HTV A 1 601 4000 HTV PFE . E 5 STU A 1 602 1549 STU STU . F 6 CL A 1 603 1 CL CL . G 6 CL A 1 604 2 CL CL . H 6 CL A 1 605 5 CL CL . I 6 CL A 1 606 6 CL CL . J 6 CL B 1 301 3 CL CL . K 7 AMP C 1 401 401 AMP AMP . L 7 AMP C 1 402 402 AMP AMP . M 8 ADP C 1 403 403 ADP ADP . N 9 SO4 C 1 404 4 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 HTV . . . D 4 49.196 -81.687 -38.317 1 82.52 ? C4 HTV 601 A 1 HETATM 2 C C7 HTV . . . D 4 46.077 -79.814 -39.582 1 90.72 ? C7 HTV 601 A 1 HETATM 3 C C6 HTV . . . D 4 47.2 -80.811 -39.438 1 86.28 ? C6 HTV 601 A 1 HETATM 4 C C9 HTV . . . D 4 43.734 -79.336 -39.693 1 96.19 ? C9 HTV 601 A 1 HETATM 5 C C13 HTV . . . D 4 41.775 -78.202 -39.798 1 100.45 ? C13 HTV 601 A 1 HETATM 6 C C20 HTV . . . D 4 38.039 -83.063 -41.008 1 143.02 ? C20 HTV 601 A 1 HETATM 7 C C21 HTV . . . D 4 37.484 -82.904 -42.413 1 144.16 ? C21 HTV 601 A 1 HETATM 8 C C8 HTV . . . D 4 44.77 -80.282 -39.633 1 91.79 ? C8 HTV 601 A 1 HETATM 9 C C18 HTV . . . D 4 37.747 -83.005 -38.517 1 144.95 ? C18 HTV 601 A 1 HETATM 10 C C16 HTV . . . D 4 39.528 -81.753 -39.708 1 138.11 ? C16 HTV 601 A 1 HETATM 11 C C19 HTV . . . D 4 37.024 -83.155 -39.865 1 144.88 ? C19 HTV 601 A 1 HETATM 12 C C1 HTV . . . D 4 47.243 -81.913 -40.33 1 83.94 ? C1 HTV 601 A 1 HETATM 13 C C2 HTV . . . D 4 48.24 -82.888 -40.207 1 82.22 ? C2 HTV 601 A 1 HETATM 14 C C3 HTV . . . D 4 49.229 -82.808 -39.205 1 83.15 ? C3 HTV 601 A 1 HETATM 15 C C5 HTV . . . D 4 48.197 -80.71 -38.423 1 83.29 ? C5 HTV 601 A 1 HETATM 16 C C10 HTV . . . D 4 43.994 -77.94 -39.713 1 95.94 ? C10 HTV 601 A 1 HETATM 17 C C11 HTV . . . D 4 45.278 -77.438 -39.68 1 94.24 ? C11 HTV 601 A 1 HETATM 18 C C12 HTV . . . D 4 46.265 -78.389 -39.618 1 93.12 ? C12 HTV 601 A 1 HETATM 19 CL CL1 HTV . . . D 4 47.803 -77.737 -39.57 1 96.52 ? CL1 HTV 601 A 1 HETATM 20 N N1 HTV . . . D 4 42.784 -77.268 -39.774 1 98.6 ? N1 HTV 601 A 1 HETATM 21 C C14 HTV . . . D 4 42.34 -79.466 -39.742 1 103.65 ? C14 HTV 601 A 1 HETATM 22 C C15 HTV . . . D 4 41.701 -80.731 -39.681 1 115.96 ? C15 HTV 601 A 1 HETATM 23 O O1 HTV . . . D 4 42.245 -81.842 -39.539 1 115.21 ? O1 HTV 601 A 1 HETATM 24 O O2 HTV . . . D 4 40.328 -80.57 -39.752 1 128.47 ? O2 HTV 601 A 1 HETATM 25 C C17 HTV . . . D 4 38.595 -81.731 -38.495 1 143.58 ? C17 HTV 601 A 1 HETATM 26 O O3 HTV . . . D 4 38.78 -81.835 -40.908 1 141.07 ? O3 HTV 601 A 1 HETATM 27 O O4 HTV . . . D 4 36.337 -82.739 -42.762 1 145.74 ? O4 HTV 601 A 1 HETATM 28 O O5 HTV . . . D 4 38.491 -82.934 -43.339 1 143.43 ? O5 HTV 601 A 1 HETATM 29 O O6 HTV . . . D 4 36.316 -84.392 -39.924 1 144.66 ? O6 HTV 601 A 1 HETATM 30 O O7 HTV . . . D 4 36.865 -83.068 -37.393 1 144.14 ? O7 HTV 601 A 1 HETATM 31 O O8 HTV . . . D 4 39.308 -81.602 -37.26 1 142.98 ? O8 HTV 601 A 1 HETATM 32 C C22 HTV . . . D 4 50.293 -83.907 -39.046 1 85.23 ? C22 HTV 601 A 1 HETATM 33 C C23 HTV . . . D 4 51.657 -83.404 -38.513 1 88.59 ? C23 HTV 601 A 1 HETATM 34 C C24 HTV . . . D 4 52.368 -84.128 -39.653 1 89.51 ? C24 HTV 601 A 1 HETATM 35 C C25 HTV . . . D 4 51.02 -84.316 -40.352 1 87.19 ? C25 HTV 601 A 1 HETATM 36 O O9 HTV . . . D 4 49.823 -85.032 -38.301 1 82.97 ? O9 HTV 601 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 36 #