data_6E4U # _model_server_result.job_id dX0qaz1nkN0ULgQcTLMudg _model_server_result.datetime_utc '2025-03-04 18:16:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6E4U # _exptl.entry_id 6E4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6E4U _cell.length_a 124.5 _cell.length_b 124.5 _cell.length_c 402.78 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -62.25 -107.820163 -67.13 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale3 B C ARG 41 B ARG 107 1_555 B N SEP 42 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale4 B C SEP 42 B SEP 108 1_555 B N GLN 43 B GLN 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 456 n n O4 C21 STU sing 457 n n C25 C24 STU sing 458 n n C25 N3 STU sing 459 n n C25 H25 STU sing 460 n n C24 C23 STU sing 461 n n C24 H241 STU sing 462 n n C24 H242 STU sing 463 n n C23 C22 STU sing 464 n n C23 N4 STU sing 465 n n C23 H23 STU sing 466 n n C22 C21 STU sing 467 n n C22 O6 STU sing 468 n n C22 H22 STU sing 469 n n C21 C26 STU sing 470 n n C21 N2 STU sing 471 n n C26 H261 STU sing 472 n n C26 H262 STU sing 473 n n C26 H263 STU sing 474 n n N2 C18 STU sing 475 n y N2 C17 STU sing 476 n y C18 C19 STU doub 477 n y C18 C11 STU sing 478 n y C19 C6 STU sing 479 n y C19 N3 STU sing 480 n y C6 C7 STU doub 481 n y C6 C5 STU sing 482 n y C7 C10 STU sing 483 n y C7 C8 STU sing 484 n n C10 C11 STU doub 485 n y C10 C9 STU sing 486 n n C11 C12 STU sing 487 n y C12 C17 STU doub 488 n y C12 C13 STU sing 489 n y C17 C16 STU sing 490 n y C16 C15 STU doub 491 n y C16 H16 STU sing 492 n n C15 C14 STU sing 493 n y C15 H15 STU sing 494 n n C14 C13 STU doub 495 n y C14 H14 STU sing 496 n n C13 H13 STU sing 497 n n C9 N1 STU sing 498 n n C9 H91 STU sing 499 n n C9 H92 STU sing 500 n n N1 C8 STU sing 501 n n N1 HN1 STU sing 502 n n C8 O5 STU doub 503 n n C5 C20 STU doub 504 n y C5 C4 STU sing 505 n y C20 C1 STU sing 506 n y C20 N3 STU sing 507 n y C1 C2 STU doub 508 n y C1 H1 STU sing 509 n n C2 C3 STU sing 510 n y C2 H2 STU sing 511 n n C3 C4 STU doub 512 n y C3 H3 STU sing 513 n n C4 H4 STU sing 514 n n O6 C27 STU sing 515 n n C27 H271 STU sing 516 n n C27 H272 STU sing 517 n n C27 H273 STU sing 518 n n N4 C28 STU sing 519 n n N4 HN4 STU sing 520 n n C28 H281 STU sing 521 n n C28 H282 STU sing 522 n n C28 H283 STU sing 523 n n # _atom_sites.entry_id 6E4U _atom_sites.fract_transf_matrix[1][1] 0.008032 _atom_sites.fract_transf_matrix[1][2] 0.004637 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 STU A 1 601 1549 STU STU . E 5 HU7 A 1 602 4000 HU7 PFE . F 6 CL A 1 603 4 CL CL . G 6 CL A 1 604 5 CL CL . H 6 CL A 1 605 1 CL CL . I 6 CL A 1 606 3 CL CL . J 7 AMP C 1 401 1 AMP AMP . K 7 AMP C 1 402 2 AMP AMP . L 8 ADP C 1 403 0 ADP ADP . M 9 SO4 C 1 404 2 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . D 4 42.079 -86.507 -26.441 1 49.76 ? O4 STU 601 A 1 HETATM 2 C C25 STU . . . D 4 42.616 -87.516 -25.572 1 49.33 ? C25 STU 601 A 1 HETATM 3 C C24 STU . . . D 4 41.619 -88.082 -24.561 1 49.18 ? C24 STU 601 A 1 HETATM 4 C C23 STU . . . D 4 40.207 -87.593 -24.827 1 49.47 ? C23 STU 601 A 1 HETATM 5 C C22 STU . . . D 4 40.214 -86.073 -24.854 1 51.38 ? C22 STU 601 A 1 HETATM 6 C C21 STU . . . D 4 41.182 -85.525 -25.908 1 49.89 ? C21 STU 601 A 1 HETATM 7 C C26 STU . . . D 4 40.36 -85.045 -27.101 1 49.21 ? C26 STU 601 A 1 HETATM 8 N N2 STU . . . D 4 41.952 -84.378 -25.331 1 51.15 ? N2 STU 601 A 1 HETATM 9 C C18 STU . . . D 4 43.168 -84.494 -24.742 1 51.75 ? C18 STU 601 A 1 HETATM 10 C C19 STU . . . D 4 44.036 -85.689 -24.534 1 52.09 ? C19 STU 601 A 1 HETATM 11 C C6 STU . . . D 4 45.328 -85.531 -23.867 1 53.89 ? C6 STU 601 A 1 HETATM 12 C C7 STU . . . D 4 45.717 -84.167 -23.425 1 54.12 ? C7 STU 601 A 1 HETATM 13 C C10 STU . . . D 4 44.903 -82.97 -23.608 1 53.22 ? C10 STU 601 A 1 HETATM 14 C C11 STU . . . D 4 43.587 -83.153 -24.291 1 52.7 ? C11 STU 601 A 1 HETATM 15 C C12 STU . . . D 4 42.488 -82.264 -24.671 1 52.76 ? C12 STU 601 A 1 HETATM 16 C C17 STU . . . D 4 41.456 -83.102 -25.331 1 51.67 ? C17 STU 601 A 1 HETATM 17 C C16 STU . . . D 4 40.306 -82.474 -25.787 1 51.61 ? C16 STU 601 A 1 HETATM 18 C C15 STU . . . D 4 40.178 -81.096 -25.598 1 52.82 ? C15 STU 601 A 1 HETATM 19 C C14 STU . . . D 4 41.165 -80.328 -24.969 1 53.83 ? C14 STU 601 A 1 HETATM 20 C C13 STU . . . D 4 42.343 -80.9 -24.492 1 53.41 ? C13 STU 601 A 1 HETATM 21 C C9 STU . . . D 4 45.58 -81.804 -23.06 1 53.43 ? C9 STU 601 A 1 HETATM 22 N N1 STU . . . D 4 46.867 -82.331 -22.52 1 55.24 ? N1 STU 601 A 1 HETATM 23 C C8 STU . . . D 4 46.924 -83.671 -22.739 1 56.34 ? C8 STU 601 A 1 HETATM 24 O O5 STU . . . D 4 47.91 -84.416 -22.388 1 57.77 ? O5 STU 601 A 1 HETATM 25 C C5 STU . . . D 4 45.891 -86.871 -23.834 1 53.15 ? C5 STU 601 A 1 HETATM 26 C C20 STU . . . D 4 44.889 -87.749 -24.489 1 49.93 ? C20 STU 601 A 1 HETATM 27 C C1 STU . . . D 4 45.205 -89.097 -24.58 1 49.49 ? C1 STU 601 A 1 HETATM 28 C C2 STU . . . D 4 46.422 -89.548 -24.062 1 51.3 ? C2 STU 601 A 1 HETATM 29 C C3 STU . . . D 4 47.344 -88.692 -23.45 1 52.59 ? C3 STU 601 A 1 HETATM 30 C C4 STU . . . D 4 47.093 -87.329 -23.324 1 53.78 ? C4 STU 601 A 1 HETATM 31 N N3 STU . . . D 4 43.814 -86.983 -24.876 1 49.77 ? N3 STU 601 A 1 HETATM 32 O O6 STU . . . D 4 40.553 -85.598 -23.55 1 55.19 ? O6 STU 601 A 1 HETATM 33 C C27 STU . . . D 4 39.4 -85.225 -22.798 1 55.61 ? C27 STU 601 A 1 HETATM 34 N N4 STU . . . D 4 39.297 -88.087 -23.813 1 49.7 ? N4 STU 601 A 1 HETATM 35 C C28 STU . . . D 4 37.965 -87.526 -23.693 1 50.06 ? C28 STU 601 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #