data_6E4U # _model_server_result.job_id cIbT5iCrX6R-FxT551R4ZA _model_server_result.datetime_utc '2025-03-04 17:56:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 6E4U # _exptl.entry_id 6E4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.904 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-O-{6-chloro-5-[6-(dimethylamino)-2-methoxypyridin-3-yl]-1H-indole-3-carbonyl}-beta-D-glucopyranuronic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6E4U _cell.length_a 124.5 _cell.length_b 124.5 _cell.length_c 402.78 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -62.25 -107.820163 -67.13 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale3 B C ARG 41 B ARG 107 1_555 B N SEP 42 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale4 B C SEP 42 B SEP 108 1_555 B N GLN 43 B GLN 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? # _chem_comp.formula 'C23 H24 Cl N3 O9' _chem_comp.formula_weight 521.904 _chem_comp.id HU7 _chem_comp.mon_nstd_flag . _chem_comp.name '1-O-{6-chloro-5-[6-(dimethylamino)-2-methoxypyridin-3-yl]-1H-indole-3-carbonyl}-beta-D-glucopyranuronic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C23 HU7 doub 233 n n O6 C23 HU7 sing 234 n n C23 C22 HU7 sing 235 n n C8 O1 HU7 sing 236 n n C22 O4 HU7 sing 237 n n C22 C21 HU7 sing 238 n n O4 C18 HU7 sing 239 n n O1 C7 HU7 sing 240 n n O7 C21 HU7 sing 241 n n C21 C20 HU7 sing 242 n n C18 O3 HU7 sing 243 n n C18 C19 HU7 sing 244 n n C7 N2 HU7 doub 245 n y C7 C6 HU7 sing 246 n y O3 C17 HU7 sing 247 n n C2 N1 HU7 sing 248 n n N2 C3 HU7 sing 249 n y C17 O2 HU7 doub 250 n n C17 C16 HU7 sing 251 n n C15 N3 HU7 sing 252 n y C15 C16 HU7 doub 253 n y N3 C12 HU7 sing 254 n y C16 C11 HU7 sing 255 n y C12 C11 HU7 doub 256 n y C12 C13 HU7 sing 257 n y C11 C10 HU7 sing 258 n y C20 C19 HU7 sing 259 n n C20 O8 HU7 sing 260 n n C13 C14 HU7 doub 261 n y C10 C9 HU7 doub 262 n y C14 C9 HU7 sing 263 n y C14 CL1 HU7 sing 264 n n C9 C6 HU7 sing 265 n n C19 O9 HU7 sing 266 n n C6 C5 HU7 doub 267 n y C3 N1 HU7 sing 268 n n C3 C4 HU7 doub 269 n y N1 C1 HU7 sing 270 n n C5 C4 HU7 sing 271 n y N3 H1 HU7 sing 272 n n C4 H2 HU7 sing 273 n n C13 H3 HU7 sing 274 n n C20 H4 HU7 sing 275 n n C21 H5 HU7 sing 276 n n C8 H6 HU7 sing 277 n n C8 H7 HU7 sing 278 n n C8 H8 HU7 sing 279 n n C18 H9 HU7 sing 280 n n C19 H10 HU7 sing 281 n n C1 H11 HU7 sing 282 n n C1 H12 HU7 sing 283 n n C1 H13 HU7 sing 284 n n C2 H14 HU7 sing 285 n n C2 H15 HU7 sing 286 n n C2 H16 HU7 sing 287 n n C5 H17 HU7 sing 288 n n C10 H18 HU7 sing 289 n n C15 H19 HU7 sing 290 n n C22 H20 HU7 sing 291 n n O6 H21 HU7 sing 292 n n O7 H22 HU7 sing 293 n n O8 H23 HU7 sing 294 n n O9 H24 HU7 sing 295 n n # _atom_sites.entry_id 6E4U _atom_sites.fract_transf_matrix[1][1] 0.008032 _atom_sites.fract_transf_matrix[1][2] 0.004637 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 STU A 1 601 1549 STU STU . E 5 HU7 A 1 602 4000 HU7 PFE . F 6 CL A 1 603 4 CL CL . G 6 CL A 1 604 5 CL CL . H 6 CL A 1 605 1 CL CL . I 6 CL A 1 606 3 CL CL . J 7 AMP C 1 401 1 AMP AMP . K 7 AMP C 1 402 2 AMP AMP . L 8 ADP C 1 403 0 ADP ADP . M 9 SO4 C 1 404 2 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 HU7 . . . E 5 43.102 -78.008 -39.905 1 70.12 ? N3 HU7 602 A 1 HETATM 2 C C4 HU7 . . . E 5 49.558 -82.151 -38.162 1 58.82 ? C4 HU7 602 A 1 HETATM 3 N N2 HU7 . . . E 5 48.775 -83.314 -40.114 1 59.93 ? N2 HU7 602 A 1 HETATM 4 C C7 HU7 . . . E 5 47.823 -82.407 -40.267 1 63.34 ? C7 HU7 602 A 1 HETATM 5 C C6 HU7 . . . E 5 47.62 -81.344 -39.353 1 62.58 ? C6 HU7 602 A 1 HETATM 6 C C9 HU7 . . . E 5 46.482 -80.378 -39.473 1 65.74 ? C9 HU7 602 A 1 HETATM 7 C C13 HU7 . . . E 5 45.599 -78.112 -39.661 1 67.61 ? C13 HU7 602 A 1 HETATM 8 C C20 HU7 . . . E 5 37.593 -83.417 -39.663 1 103.05 ? C20 HU7 602 A 1 HETATM 9 C C21 HU7 . . . E 5 37.319 -83.658 -41.148 1 102.46 ? C21 HU7 602 A 1 HETATM 10 C C8 HU7 . . . E 5 47.456 -83.296 -42.435 1 68.55 ? C8 HU7 602 A 1 HETATM 11 C C18 HU7 . . . E 5 39.82 -82.486 -40.289 1 98.03 ? C18 HU7 602 A 1 HETATM 12 C C16 HU7 . . . E 5 42.669 -80.207 -39.867 1 75.38 ? C16 HU7 602 A 1 HETATM 13 C C19 HU7 . . . E 5 38.563 -82.255 -39.454 1 101.93 ? C19 HU7 602 A 1 HETATM 14 C C1 HU7 . . . E 5 51.066 -84.676 -37.66 1 53.78 ? C1 HU7 602 A 1 HETATM 15 N N1 HU7 . . . E 5 50.584 -84.25 -38.962 1 54.66 ? N1 HU7 602 A 1 HETATM 16 C C2 HU7 . . . E 5 51.085 -84.949 -40.134 1 54.27 ? C2 HU7 602 A 1 HETATM 17 C C3 HU7 . . . E 5 49.624 -83.2 -39.086 1 57.67 ? C3 HU7 602 A 1 HETATM 18 C C5 HU7 . . . E 5 48.529 -81.235 -38.298 1 59.66 ? C5 HU7 602 A 1 HETATM 19 O O1 HU7 . . . E 5 47.085 -82.391 -41.395 1 67.2 ? O1 HU7 602 A 1 HETATM 20 C C10 HU7 . . . E 5 45.176 -80.875 -39.556 1 67.4 ? C10 HU7 602 A 1 HETATM 21 C C11 HU7 . . . E 5 44.089 -80.018 -39.705 1 70 ? C11 HU7 602 A 1 HETATM 22 C C12 HU7 . . . E 5 44.319 -78.632 -39.748 1 68.94 ? C12 HU7 602 A 1 HETATM 23 C C14 HU7 . . . E 5 46.663 -78.989 -39.531 1 67.62 ? C14 HU7 602 A 1 HETATM 24 CL CL1 HU7 . . . E 5 48.255 -78.319 -39.45 1 70.74 ? CL1 HU7 602 A 1 HETATM 25 C C15 HU7 . . . E 5 42.121 -78.952 -39.969 1 72.26 ? C15 HU7 602 A 1 HETATM 26 C C17 HU7 . . . E 5 41.957 -81.497 -39.978 1 84.77 ? C17 HU7 602 A 1 HETATM 27 O O2 HU7 . . . E 5 42.494 -82.576 -39.911 1 85.89 ? O2 HU7 602 A 1 HETATM 28 O O3 HU7 . . . E 5 40.631 -81.315 -40.144 1 92.12 ? O3 HU7 602 A 1 HETATM 29 C C22 HU7 . . . E 5 38.653 -83.744 -41.927 1 101.38 ? C22 HU7 602 A 1 HETATM 30 O O4 HU7 . . . E 5 39.485 -82.607 -41.661 1 99.61 ? O4 HU7 602 A 1 HETATM 31 C C23 HU7 . . . E 5 38.377 -83.741 -43.428 1 101.65 ? C23 HU7 602 A 1 HETATM 32 O O5 HU7 . . . E 5 38.308 -82.714 -44.081 1 100.6 ? O5 HU7 602 A 1 HETATM 33 O O6 HU7 . . . E 5 38.253 -84.943 -43.924 1 102.78 ? O6 HU7 602 A 1 HETATM 34 O O7 HU7 . . . E 5 36.595 -84.875 -41.298 1 102.49 ? O7 HU7 602 A 1 HETATM 35 O O8 HU7 . . . E 5 36.37 -83.187 -38.969 1 103.76 ? O8 HU7 602 A 1 HETATM 36 O O9 HU7 . . . E 5 38.901 -82.129 -38.075 1 102.96 ? O9 HU7 602 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 36 #