data_6E4W
#
_model_server_result.job_id            ZGMYu5-8niJMg9BafoW1kQ 
_model_server_result.datetime_utc      '2024-11-22 05:01:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6e4w 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":401}' 
#
_entry.id    6E4W 
#
_exptl.entry_id    6E4W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6E4W 
_cell.length_a            123.97 
_cell.length_b            123.97 
_cell.length_c            402.12 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6E4W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1 
A,B,C,D,E,F,G,H,I,J,K,L 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -61.985 -107.361169 -67.02 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 173 A ARG 171 1_555 A N TPO 174 A TPO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale2 A C TPO 174 A TPO 172 1_555 A N SER 175 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale3 B C ARG 41 B ARG 107 1_555 B N SEP 42 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 B C SEP 42 B SEP 108 1_555 B N GLN 43 B GLN 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 57 n n 
P O2P AMP sing 58 n n 
P O3P AMP sing 59 n n 
P O5' AMP sing 60 n n 
O2P HOP2 AMP sing 61 n n 
O3P HOP3 AMP sing 62 n n 
O5' C5' AMP sing 63 n n 
C5' C4' AMP sing 64 n n 
C5' "H5'1" AMP sing 65 n n 
C5' "H5'2" AMP sing 66 n n 
C4' O4' AMP sing 67 n n 
C4' C3' AMP sing 68 n n 
C4' H4' AMP sing 69 n n 
O4' C1' AMP sing 70 n n 
C3' O3' AMP sing 71 n n 
C3' C2' AMP sing 72 n n 
C3' H3' AMP sing 73 n n 
O3' HO3' AMP sing 74 n n 
C2' O2' AMP sing 75 n n 
C2' C1' AMP sing 76 n n 
C2' H2' AMP sing 77 n n 
O2' HO2' AMP sing 78 n n 
C1' N9 AMP sing 79 n n 
C1' H1' AMP sing 80 n n 
N9 C8 AMP sing 81 n y 
N9 C4 AMP sing 82 n y 
C8 N7 AMP doub 83 n y 
C8 H8 AMP sing 84 n n 
N7 C5 AMP sing 85 n y 
C5 C6 AMP sing 86 n y 
C5 C4 AMP doub 87 n y 
C6 N6 AMP sing 88 n n 
C6 N1 AMP doub 89 n y 
N6 HN61 AMP sing 90 n n 
N6 HN62 AMP sing 91 n n 
N1 C2 AMP sing 92 n y 
C2 N3 AMP doub 93 n y 
C2 H2 AMP sing 94 n n 
N3 C4 AMP sing 95 n y 
#
_atom_sites.entry_id                     6E4W 
_atom_sites.fract_transf_matrix[1][1]    0.008066 
_atom_sites.fract_transf_matrix[1][2]    0.004657 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009314 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002487 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 STU A 1 601 1549 STU STU . 
E 5 HUG A 1 602 4000 HUG PFE . 
F 6 CL A 1 603 1 CL CL . 
G 6 CL A 1 604 3 CL CL . 
H 6 CL A 1 605 4 CL CL . 
I 7 AMP C 1 401 1 AMP AMP . 
J 7 AMP C 1 402 2 AMP AMP . 
K 8 ADP C 1 403 3 ADP ADP . 
L 9 SO4 C 1 404 2 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . I 7 26.956 -36.86 20.317 1 151.14 ? P AMP 401 C 1 
HETATM 2 O O1P AMP . . . I 7 27.418 -37.957 19.411 1 150.8 ? O1P AMP 401 C 1 
HETATM 3 O O2P AMP . . . I 7 26.676 -37.372 21.741 1 150.4 ? O2P AMP 401 C 1 
HETATM 4 O O3P AMP . . . I 7 25.696 -36.106 19.805 1 149.39 ? O3P AMP 401 C 1 
HETATM 5 O O5' AMP . . . I 7 28.11 -35.789 20.486 1 154.12 ? O5' AMP 401 C 1 
HETATM 6 C C5' AMP . . . I 7 28.27 -34.44 19.998 1 154.68 ? C5' AMP 401 C 1 
HETATM 7 C C4' AMP . . . I 7 28.729 -33.54 21.122 1 154.87 ? C4' AMP 401 C 1 
HETATM 8 O O4' AMP . . . I 7 27.722 -33.484 22.156 1 152.53 ? O4' AMP 401 C 1 
HETATM 9 C C3' AMP . . . I 7 30.037 -33.927 21.815 1 156.19 ? C3' AMP 401 C 1 
HETATM 10 O O3' AMP . . . I 7 30.896 -32.802 21.964 1 161.13 ? O3' AMP 401 C 1 
HETATM 11 C C2' AMP . . . I 7 29.568 -34.498 23.155 1 153.56 ? C2' AMP 401 C 1 
HETATM 12 O O2' AMP . . . I 7 30.517 -34.393 24.207 1 155.37 ? O2' AMP 401 C 1 
HETATM 13 C C1' AMP . . . I 7 28.347 -33.633 23.413 1 153.76 ? C1' AMP 401 C 1 
HETATM 14 N N9 AMP . . . I 7 27.382 -34.203 24.345 1 152.18 ? N9 AMP 401 C 1 
HETATM 15 C C8 AMP . . . I 7 26.817 -35.451 24.304 1 149.76 ? C8 AMP 401 C 1 
HETATM 16 N N7 AMP . . . I 7 25.945 -35.673 25.255 1 149.28 ? N7 AMP 401 C 1 
HETATM 17 C C5 AMP . . . I 7 25.928 -34.485 25.971 1 150.87 ? C5 AMP 401 C 1 
HETATM 18 C C6 AMP . . . I 7 25.168 -34.053 27.079 1 150.42 ? C6 AMP 401 C 1 
HETATM 19 N N6 AMP . . . I 7 24.284 -34.822 27.722 1 147 ? N6 AMP 401 C 1 
HETATM 20 N N1 AMP . . . I 7 25.356 -32.785 27.513 1 154.13 ? N1 AMP 401 C 1 
HETATM 21 C C2 AMP . . . I 7 26.25 -32.012 26.883 1 156.62 ? C2 AMP 401 C 1 
HETATM 22 N N3 AMP . . . I 7 27.029 -32.313 25.839 1 156.2 ? N3 AMP 401 C 1 
HETATM 23 C C4 AMP . . . I 7 26.815 -33.572 25.424 1 153.05 ? C4 AMP 401 C 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#