data_6E5A
#
_model_server_result.job_id            x_QFtI88BYgwj_spLvycJA 
_model_server_result.datetime_utc      '2024-11-22 07:50:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6e5a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    6E5A 
#
_exptl.entry_id    6E5A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              275.346 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5Z)-5-({4-[(prop-2-yn-1-yl)oxy]phenyl}methylidene)-2-sulfanylidene-1,3-thiazolidin-4-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.39 
_cell.angle_gamma         90 
_cell.entry_id            6E5A 
_cell.length_a            92.555 
_cell.length_b            61.163 
_cell.length_c            118.092 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6E5A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.2775 30.5815 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 80 A GLY 284 1_555 A N CME 81 A CME 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C CME 81 A CME 285 1_555 A N GLN 82 A GLN 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 B C GLY 80 B GLY 284 1_555 B N CME 81 B CME 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 B C CME 81 B CME 285 1_555 B N GLN 82 B GLN 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C13 H9 N O2 S2' 
_chem_comp.formula_weight    275.346 
_chem_comp.id                HV4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5Z)-5-({4-[(prop-2-yn-1-yl)oxy]phenyl}methylidene)-2-sulfanylidene-1,3-thiazolidin-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C07 C06 HV4 sing 160 n n 
C07 C08 HV4 doub 161 z n 
O14 C09 HV4 doub 162 n n 
C16 C17 HV4 sing 163 n n 
C16 O15 HV4 sing 164 n n 
C06 C01 HV4 doub 165 n y 
C06 C05 HV4 sing 166 n y 
C01 C02 HV4 sing 167 n y 
C05 C04 HV4 doub 168 n y 
C17 C18 HV4 trip 169 n n 
C09 C08 HV4 sing 170 n n 
C09 N10 HV4 sing 171 n n 
C08 S12 HV4 sing 172 n n 
C02 C03 HV4 doub 173 n y 
C04 C03 HV4 sing 174 n y 
C03 O15 HV4 sing 175 n n 
N10 C11 HV4 sing 176 n n 
S12 C11 HV4 sing 177 n n 
C11 S13 HV4 doub 178 n n 
C01 H1 HV4 sing 179 n n 
C02 H2 HV4 sing 180 n n 
C04 H3 HV4 sing 181 n n 
C05 H4 HV4 sing 182 n n 
C07 H5 HV4 sing 183 n n 
C16 H6 HV4 sing 184 n n 
C16 H7 HV4 sing 185 n n 
C18 H8 HV4 sing 186 n n 
N10 H9 HV4 sing 187 n n 
#
_atom_sites.entry_id                     6E5A 
_atom_sites.fract_transf_matrix[1][1]    0.010804 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002373 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01635 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00867 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HV4 A 1 501 1 HV4 LIG . 
D 2 HV4 B 1 501 1 HV4 LIG . 
E 3 HOH A 1 601 11 HOH HOH . 
E 3 HOH A 2 602 31 HOH HOH . 
E 3 HOH A 3 603 16 HOH HOH . 
E 3 HOH A 4 604 18 HOH HOH . 
E 3 HOH A 5 605 13 HOH HOH . 
E 3 HOH A 6 606 5 HOH HOH . 
E 3 HOH A 7 607 39 HOH HOH . 
E 3 HOH A 8 608 38 HOH HOH . 
E 3 HOH A 9 609 6 HOH HOH . 
E 3 HOH A 10 610 40 HOH HOH . 
E 3 HOH A 11 611 4 HOH HOH . 
E 3 HOH A 12 612 22 HOH HOH . 
E 3 HOH A 13 613 37 HOH HOH . 
E 3 HOH A 14 614 34 HOH HOH . 
E 3 HOH A 15 615 36 HOH HOH . 
E 3 HOH A 16 616 17 HOH HOH . 
E 3 HOH A 17 617 32 HOH HOH . 
E 3 HOH A 18 618 30 HOH HOH . 
E 3 HOH A 19 619 7 HOH HOH . 
E 3 HOH A 20 620 15 HOH HOH . 
E 3 HOH A 21 621 8 HOH HOH . 
E 3 HOH A 22 622 35 HOH HOH . 
E 3 HOH A 23 623 42 HOH HOH . 
E 3 HOH A 24 624 12 HOH HOH . 
E 3 HOH A 25 625 56 HOH HOH . 
F 3 HOH B 1 601 53 HOH HOH . 
F 3 HOH B 2 602 29 HOH HOH . 
F 3 HOH B 3 603 54 HOH HOH . 
F 3 HOH B 4 604 47 HOH HOH . 
F 3 HOH B 5 605 46 HOH HOH . 
F 3 HOH B 6 606 44 HOH HOH . 
F 3 HOH B 7 607 45 HOH HOH . 
F 3 HOH B 8 608 21 HOH HOH . 
F 3 HOH B 9 609 49 HOH HOH . 
F 3 HOH B 10 610 48 HOH HOH . 
F 3 HOH B 11 611 27 HOH HOH . 
F 3 HOH B 12 612 41 HOH HOH . 
F 3 HOH B 13 613 55 HOH HOH . 
F 3 HOH B 14 614 50 HOH HOH . 
F 3 HOH B 15 615 28 HOH HOH . 
F 3 HOH B 16 616 25 HOH HOH . 
F 3 HOH B 17 617 51 HOH HOH . 
F 3 HOH B 18 618 19 HOH HOH . 
F 3 HOH B 19 619 24 HOH HOH . 
F 3 HOH B 20 620 52 HOH HOH . 
F 3 HOH B 21 621 33 HOH HOH . 
F 3 HOH B 22 622 20 HOH HOH . 
F 3 HOH B 23 623 26 HOH HOH . 
F 3 HOH B 24 624 9 HOH HOH . 
F 3 HOH B 25 625 23 HOH HOH . 
F 3 HOH B 26 626 57 HOH HOH . 
F 3 HOH B 27 627 58 HOH HOH . 
F 3 HOH B 28 628 1 HOH HOH . 
F 3 HOH B 29 629 43 HOH HOH . 
F 3 HOH B 30 630 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C17 HV4 . . . C 2 -2.188 31.427 126.984 1 125.81 ? C17 HV4 501 A 1 
HETATM 2 C C01 HV4 . . . C 2 -7.714 30.07 125.275 1 110.89 ? C01 HV4 501 A 1 
HETATM 3 C C02 HV4 . . . C 2 -6.348 29.882 125.413 1 117.2 ? C02 HV4 501 A 1 
HETATM 4 C C03 HV4 . . . C 2 -5.513 30.972 125.592 1 121.92 ? C03 HV4 501 A 1 
HETATM 5 C C04 HV4 . . . C 2 -6.048 32.248 125.634 1 117.52 ? C04 HV4 501 A 1 
HETATM 6 C C05 HV4 . . . C 2 -7.413 32.433 125.498 1 111.26 ? C05 HV4 501 A 1 
HETATM 7 C C06 HV4 . . . C 2 -8.256 31.346 125.31 1 108.39 ? C06 HV4 501 A 1 
HETATM 8 C C07 HV4 . . . C 2 -9.774 31.495 125.159 1 106.39 ? C07 HV4 501 A 1 
HETATM 9 C C08 HV4 . . . C 2 -10.446 32.568 124.773 1 105.09 ? C08 HV4 501 A 1 
HETATM 10 C C09 HV4 . . . C 2 -11.887 32.634 124.772 1 97.27 ? C09 HV4 501 A 1 
HETATM 11 C C11 HV4 . . . C 2 -11.323 34.771 123.971 1 110.37 ? C11 HV4 501 A 1 
HETATM 12 C C16 HV4 . . . C 2 -3.675 31.073 127.033 1 128.32 ? C16 HV4 501 A 1 
HETATM 13 C C18 HV4 . . . C 2 -1.034 31.702 126.955 1 124.97 ? C18 HV4 501 A 1 
HETATM 14 N N10 HV4 . . . C 2 -12.292 33.909 124.307 1 104.29 ? N10 HV4 501 A 1 
HETATM 15 O O14 HV4 . . . C 2 -12.614 31.761 125.106 1 83.23 ? O14 HV4 501 A 1 
HETATM 16 O O15 HV4 . . . C 2 -4.132 30.794 125.738 1 124.85 ? O15 HV4 501 A 1 
HETATM 17 S S12 HV4 . . . C 2 -9.878 34.037 124.217 1 106.56 ? S12 HV4 501 A 1 
HETATM 18 S S13 HV4 . . . C 2 -11.547 36.253 123.425 1 117.14 ? S13 HV4 501 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           18 
#