data_6E5V # _model_server_result.job_id LTGGA8kTeQI39ksvBvnYgA _model_server_result.datetime_utc '2024-10-18 18:18:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 6E5V # _exptl.entry_id 6E5V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 239.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[(S)-amino(carboxy)methyl]benzene-1,2-dicarboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6E5V _cell.length_a 82.945 _cell.length_b 106.78 _cell.length_c 117.908 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 64 1_555 A SG CYS 107 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 370 A CYS 369 1_555 A SG CYS 385 A CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 425 A CYS 424 1_555 A SG CYS 432 A CYS 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 65 B CYS 64 1_555 B SG CYS 107 B CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 370 B CYS 369 1_555 B SG CYS 385 B CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 425 B CYS 424 1_555 B SG CYS 432 B CYS 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C10 H9 N O6' _chem_comp.formula_weight 239.182 _chem_comp.id HVG _chem_comp.mon_nstd_flag . _chem_comp.name '4-[(S)-amino(carboxy)methyl]benzene-1,2-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(S)-3,4-Dicarboxyphenylglycine (DCPG)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C10 HVG sing 152 n n O14 C9 HVG doub 153 n n C10 C9 HVG sing 154 n n C10 C6 HVG sing 155 n n C9 O17 HVG sing 156 n n C3 C6 HVG doub 157 n y C3 C5 HVG sing 158 n y C6 C2 HVG sing 159 n y O16 C8 HVG doub 160 n n C8 C5 HVG sing 161 n n C8 O13 HVG sing 162 n n C5 C4 HVG doub 163 n y C2 C1 HVG doub 164 n y C4 C1 HVG sing 165 n y C4 C7 HVG sing 166 n n C7 O12 HVG doub 167 n n C7 O15 HVG sing 168 n n C1 H1 HVG sing 169 n n C3 H2 HVG sing 170 n n C2 H3 HVG sing 171 n n C10 H4 HVG sing 172 n n N11 H5 HVG sing 173 n n N11 H6 HVG sing 174 n n O13 H8 HVG sing 175 n n O15 H9 HVG sing 176 n n O17 H10 HVG sing 177 n n # _atom_sites.entry_id 6E5V _atom_sites.fract_transf_matrix[1][1] 0.012056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HVG A 1 601 601 HVG SX1 . D 3 CL A 1 602 701 CL CL . E 2 HVG B 1 601 601 HVG SX1 . F 3 CL B 1 602 701 CL CL . G 4 HOH A 1 701 820 HOH HOH . G 4 HOH A 2 702 821 HOH HOH . G 4 HOH A 3 703 803 HOH HOH . G 4 HOH A 4 704 818 HOH HOH . G 4 HOH A 5 705 814 HOH HOH . G 4 HOH A 6 706 819 HOH HOH . G 4 HOH A 7 707 810 HOH HOH . G 4 HOH A 8 708 817 HOH HOH . G 4 HOH A 9 709 801 HOH HOH . G 4 HOH A 10 710 815 HOH HOH . G 4 HOH A 11 711 802 HOH HOH . G 4 HOH A 12 712 809 HOH HOH . G 4 HOH A 13 713 813 HOH HOH . G 4 HOH A 14 714 812 HOH HOH . G 4 HOH A 15 715 811 HOH HOH . G 4 HOH A 16 716 804 HOH HOH . G 4 HOH A 17 717 807 HOH HOH . G 4 HOH A 18 718 806 HOH HOH . G 4 HOH A 19 719 816 HOH HOH . G 4 HOH A 20 720 805 HOH HOH . G 4 HOH A 21 721 808 HOH HOH . H 4 HOH B 1 701 809 HOH HOH . H 4 HOH B 2 702 810 HOH HOH . H 4 HOH B 3 703 806 HOH HOH . H 4 HOH B 4 704 812 HOH HOH . H 4 HOH B 5 705 808 HOH HOH . H 4 HOH B 6 706 801 HOH HOH . H 4 HOH B 7 707 802 HOH HOH . H 4 HOH B 8 708 804 HOH HOH . H 4 HOH B 9 709 815 HOH HOH . H 4 HOH B 10 710 811 HOH HOH . H 4 HOH B 11 711 814 HOH HOH . H 4 HOH B 12 712 807 HOH HOH . H 4 HOH B 13 713 803 HOH HOH . H 4 HOH B 14 714 805 HOH HOH . H 4 HOH B 15 715 813 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 HVG . . . E 2 35.687 -71.199 -8.519 1 54.62 ? C7 HVG 601 B 1 HETATM 2 C C6 HVG . . . E 2 34.233 -69.613 -12.175 1 53.5 ? C6 HVG 601 B 1 HETATM 3 C C1 HVG . . . E 2 35.079 -69.303 -9.94 1 53.71 ? C1 HVG 601 B 1 HETATM 4 C C5 HVG . . . E 2 34.81 -71.528 -10.825 1 54.12 ? C5 HVG 601 B 1 HETATM 5 C C4 HVG . . . E 2 35.183 -70.681 -9.783 1 54.12 ? C4 HVG 601 B 1 HETATM 6 C C3 HVG . . . E 2 34.334 -70.995 -12.022 1 53.97 ? C3 HVG 601 B 1 HETATM 7 C C2 HVG . . . E 2 34.606 -68.766 -11.134 1 53.51 ? C2 HVG 601 B 1 HETATM 8 C C8 HVG . . . E 2 34.904 -72.973 -10.693 1 54.47 ? C8 HVG 601 B 1 HETATM 9 C C9 HVG . . . E 2 32.645 -67.986 -13.19 1 52.51 ? C9 HVG 601 B 1 HETATM 10 C C10 HVG . . . E 2 33.725 -69.035 -13.45 1 53.04 ? C10 HVG 601 B 1 HETATM 11 N N11 HVG . . . E 2 34.788 -68.419 -14.264 1 52.71 ? N11 HVG 601 B 1 HETATM 12 O O12 HVG . . . E 2 36.555 -72.068 -8.403 1 55.4 ? O12 HVG 601 B 1 HETATM 13 O O13 HVG . . . E 2 34.175 -73.666 -9.977 1 54.77 ? O13 HVG 601 B 1 HETATM 14 O O14 HVG . . . E 2 33.083 -66.711 -13.375 1 51.77 ? O14 HVG 601 B 1 HETATM 15 O O15 HVG . . . E 2 35.099 -70.608 -7.445 1 54.93 ? O15 HVG 601 B 1 HETATM 16 O O16 HVG . . . E 2 35.9 -73.5 -11.455 1 54.53 ? O16 HVG 601 B 1 HETATM 17 O O17 HVG . . . E 2 31.497 -68.239 -12.847 1 52.45 ? O17 HVG 601 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #