data_6E5W
#
_model_server_result.job_id            1TOQRW9y-m_Pk8W5w9Ddhg 
_model_server_result.datetime_utc      '2024-11-26 07:48:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6e5w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":202}' 
#
_entry.id    6E5W 
#
_exptl.entry_id    6E5W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6E5W 
_cell.length_a            37.46 
_cell.length_b            127.51 
_cell.length_c            160.229 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6E5W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6E5W 
_atom_sites.fract_transf_matrix[1][1]    0.026695 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007843 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006241 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HVD A 1 201 201 HVD HVD . 
F 3 GOL A 1 202 301 GOL GOL . 
G 2 HVD B 1 201 201 HVD HVD . 
H 3 GOL B 1 202 301 GOL GOL . 
I 2 HVD C 1 201 201 HVD HVD . 
J 3 GOL C 1 202 301 GOL GOL . 
K 2 HVD D 1 201 201 HVD HVD . 
L 3 GOL D 1 202 301 GOL GOL . 
M 4 HOH A 1 301 48 HOH HOH . 
M 4 HOH A 2 302 21 HOH HOH . 
M 4 HOH A 3 303 178 HOH HOH . 
M 4 HOH A 4 304 26 HOH HOH . 
M 4 HOH A 5 305 23 HOH HOH . 
M 4 HOH A 6 306 41 HOH HOH . 
M 4 HOH A 7 307 36 HOH HOH . 
M 4 HOH A 8 308 229 HOH HOH . 
M 4 HOH A 9 309 67 HOH HOH . 
M 4 HOH A 10 310 184 HOH HOH . 
M 4 HOH A 11 311 1 HOH HOH . 
M 4 HOH A 12 312 167 HOH HOH . 
M 4 HOH A 13 313 225 HOH HOH . 
M 4 HOH A 14 314 25 HOH HOH . 
M 4 HOH A 15 315 71 HOH HOH . 
M 4 HOH A 16 316 44 HOH HOH . 
M 4 HOH A 17 317 13 HOH HOH . 
M 4 HOH A 18 318 56 HOH HOH . 
M 4 HOH A 19 319 185 HOH HOH . 
M 4 HOH A 20 320 195 HOH HOH . 
M 4 HOH A 21 321 77 HOH HOH . 
M 4 HOH A 22 322 201 HOH HOH . 
M 4 HOH A 23 323 128 HOH HOH . 
M 4 HOH A 24 324 120 HOH HOH . 
M 4 HOH A 25 325 137 HOH HOH . 
M 4 HOH A 26 326 60 HOH HOH . 
M 4 HOH A 27 327 231 HOH HOH . 
M 4 HOH A 28 328 134 HOH HOH . 
M 4 HOH A 29 329 226 HOH HOH . 
M 4 HOH A 30 330 154 HOH HOH . 
M 4 HOH A 31 331 153 HOH HOH . 
M 4 HOH A 32 332 113 HOH HOH . 
M 4 HOH A 33 333 230 HOH HOH . 
M 4 HOH A 34 334 28 HOH HOH . 
M 4 HOH A 35 335 45 HOH HOH . 
M 4 HOH A 36 336 68 HOH HOH . 
M 4 HOH A 37 337 227 HOH HOH . 
M 4 HOH A 38 338 254 HOH HOH . 
M 4 HOH A 39 339 233 HOH HOH . 
M 4 HOH A 40 340 108 HOH HOH . 
M 4 HOH A 41 341 166 HOH HOH . 
M 4 HOH A 42 342 88 HOH HOH . 
M 4 HOH A 43 343 232 HOH HOH . 
M 4 HOH A 44 344 107 HOH HOH . 
M 4 HOH A 45 345 150 HOH HOH . 
M 4 HOH A 46 346 234 HOH HOH . 
M 4 HOH A 47 347 188 HOH HOH . 
M 4 HOH A 48 348 255 HOH HOH . 
M 4 HOH A 49 349 95 HOH HOH . 
M 4 HOH A 50 350 228 HOH HOH . 
M 4 HOH A 51 351 208 HOH HOH . 
M 4 HOH A 52 352 123 HOH HOH . 
M 4 HOH A 53 353 224 HOH HOH . 
M 4 HOH A 54 354 202 HOH HOH . 
M 4 HOH A 55 355 182 HOH HOH . 
M 4 HOH A 56 356 111 HOH HOH . 
M 4 HOH A 57 357 215 HOH HOH . 
N 4 HOH B 1 301 174 HOH HOH . 
N 4 HOH B 2 302 99 HOH HOH . 
N 4 HOH B 3 303 83 HOH HOH . 
N 4 HOH B 4 304 57 HOH HOH . 
N 4 HOH B 5 305 114 HOH HOH . 
N 4 HOH B 6 306 12 HOH HOH . 
N 4 HOH B 7 307 8 HOH HOH . 
N 4 HOH B 8 308 210 HOH HOH . 
N 4 HOH B 9 309 19 HOH HOH . 
N 4 HOH B 10 310 164 HOH HOH . 
N 4 HOH B 11 311 61 HOH HOH . 
N 4 HOH B 12 312 221 HOH HOH . 
N 4 HOH B 13 313 54 HOH HOH . 
N 4 HOH B 14 314 14 HOH HOH . 
N 4 HOH B 15 315 102 HOH HOH . 
N 4 HOH B 16 316 191 HOH HOH . 
N 4 HOH B 17 317 65 HOH HOH . 
N 4 HOH B 18 318 91 HOH HOH . 
N 4 HOH B 19 319 40 HOH HOH . 
N 4 HOH B 20 320 35 HOH HOH . 
N 4 HOH B 21 321 64 HOH HOH . 
N 4 HOH B 22 322 237 HOH HOH . 
N 4 HOH B 23 323 259 HOH HOH . 
N 4 HOH B 24 324 220 HOH HOH . 
N 4 HOH B 25 325 173 HOH HOH . 
N 4 HOH B 26 326 106 HOH HOH . 
N 4 HOH B 27 327 165 HOH HOH . 
N 4 HOH B 28 328 121 HOH HOH . 
N 4 HOH B 29 329 141 HOH HOH . 
N 4 HOH B 30 330 261 HOH HOH . 
N 4 HOH B 31 331 179 HOH HOH . 
N 4 HOH B 32 332 117 HOH HOH . 
N 4 HOH B 33 333 18 HOH HOH . 
N 4 HOH B 34 334 109 HOH HOH . 
N 4 HOH B 35 335 103 HOH HOH . 
N 4 HOH B 36 336 175 HOH HOH . 
N 4 HOH B 37 337 131 HOH HOH . 
N 4 HOH B 38 338 86 HOH HOH . 
N 4 HOH B 39 339 236 HOH HOH . 
N 4 HOH B 40 340 160 HOH HOH . 
N 4 HOH B 41 341 238 HOH HOH . 
N 4 HOH B 42 342 181 HOH HOH . 
N 4 HOH B 43 343 144 HOH HOH . 
N 4 HOH B 44 344 138 HOH HOH . 
N 4 HOH B 45 345 149 HOH HOH . 
N 4 HOH B 46 346 211 HOH HOH . 
N 4 HOH B 47 347 262 HOH HOH . 
O 4 HOH C 1 301 115 HOH HOH . 
O 4 HOH C 2 302 37 HOH HOH . 
O 4 HOH C 3 303 29 HOH HOH . 
O 4 HOH C 4 304 79 HOH HOH . 
O 4 HOH C 5 305 17 HOH HOH . 
O 4 HOH C 6 306 30 HOH HOH . 
O 4 HOH C 7 307 38 HOH HOH . 
O 4 HOH C 8 308 58 HOH HOH . 
O 4 HOH C 9 309 118 HOH HOH . 
O 4 HOH C 10 310 82 HOH HOH . 
O 4 HOH C 11 311 136 HOH HOH . 
O 4 HOH C 12 312 129 HOH HOH . 
O 4 HOH C 13 313 9 HOH HOH . 
O 4 HOH C 14 314 94 HOH HOH . 
O 4 HOH C 15 315 69 HOH HOH . 
O 4 HOH C 16 316 49 HOH HOH . 
O 4 HOH C 17 317 70 HOH HOH . 
O 4 HOH C 18 318 78 HOH HOH . 
O 4 HOH C 19 319 42 HOH HOH . 
O 4 HOH C 20 320 63 HOH HOH . 
O 4 HOH C 21 321 133 HOH HOH . 
O 4 HOH C 22 322 163 HOH HOH . 
O 4 HOH C 23 323 84 HOH HOH . 
O 4 HOH C 24 324 73 HOH HOH . 
O 4 HOH C 25 325 161 HOH HOH . 
O 4 HOH C 26 326 260 HOH HOH . 
O 4 HOH C 27 327 47 HOH HOH . 
O 4 HOH C 28 328 140 HOH HOH . 
O 4 HOH C 29 329 157 HOH HOH . 
O 4 HOH C 30 330 190 HOH HOH . 
O 4 HOH C 31 331 87 HOH HOH . 
O 4 HOH C 32 332 75 HOH HOH . 
O 4 HOH C 33 333 235 HOH HOH . 
O 4 HOH C 34 334 148 HOH HOH . 
O 4 HOH C 35 335 76 HOH HOH . 
O 4 HOH C 36 336 105 HOH HOH . 
O 4 HOH C 37 337 74 HOH HOH . 
O 4 HOH C 38 338 258 HOH HOH . 
O 4 HOH C 39 339 256 HOH HOH . 
O 4 HOH C 40 340 122 HOH HOH . 
O 4 HOH C 41 341 206 HOH HOH . 
O 4 HOH C 42 342 239 HOH HOH . 
O 4 HOH C 43 343 196 HOH HOH . 
O 4 HOH C 44 344 81 HOH HOH . 
O 4 HOH C 45 345 186 HOH HOH . 
O 4 HOH C 46 346 257 HOH HOH . 
O 4 HOH C 47 347 192 HOH HOH . 
O 4 HOH C 48 348 209 HOH HOH . 
O 4 HOH C 49 349 219 HOH HOH . 
O 4 HOH C 50 350 240 HOH HOH . 
O 4 HOH C 51 351 241 HOH HOH . 
O 4 HOH C 52 352 101 HOH HOH . 
O 4 HOH C 53 353 212 HOH HOH . 
O 4 HOH C 54 354 59 HOH HOH . 
O 4 HOH C 55 355 193 HOH HOH . 
O 4 HOH C 56 356 253 HOH HOH . 
O 4 HOH C 57 357 53 HOH HOH . 
O 4 HOH C 58 358 146 HOH HOH . 
O 4 HOH C 59 359 177 HOH HOH . 
P 4 HOH D 1 301 244 HOH HOH . 
P 4 HOH D 2 302 216 HOH HOH . 
P 4 HOH D 3 303 139 HOH HOH . 
P 4 HOH D 4 304 50 HOH HOH . 
P 4 HOH D 5 305 6 HOH HOH . 
P 4 HOH D 6 306 197 HOH HOH . 
P 4 HOH D 7 307 97 HOH HOH . 
P 4 HOH D 8 308 43 HOH HOH . 
P 4 HOH D 9 309 34 HOH HOH . 
P 4 HOH D 10 310 51 HOH HOH . 
P 4 HOH D 11 311 5 HOH HOH . 
P 4 HOH D 12 312 55 HOH HOH . 
P 4 HOH D 13 313 10 HOH HOH . 
P 4 HOH D 14 314 4 HOH HOH . 
P 4 HOH D 15 315 72 HOH HOH . 
P 4 HOH D 16 316 90 HOH HOH . 
P 4 HOH D 17 317 247 HOH HOH . 
P 4 HOH D 18 318 183 HOH HOH . 
P 4 HOH D 19 319 162 HOH HOH . 
P 4 HOH D 20 320 33 HOH HOH . 
P 4 HOH D 21 321 222 HOH HOH . 
P 4 HOH D 22 322 104 HOH HOH . 
P 4 HOH D 23 323 110 HOH HOH . 
P 4 HOH D 24 324 96 HOH HOH . 
P 4 HOH D 25 325 217 HOH HOH . 
P 4 HOH D 26 326 98 HOH HOH . 
P 4 HOH D 27 327 155 HOH HOH . 
P 4 HOH D 28 328 100 HOH HOH . 
P 4 HOH D 29 329 265 HOH HOH . 
P 4 HOH D 30 330 93 HOH HOH . 
P 4 HOH D 31 331 89 HOH HOH . 
P 4 HOH D 32 332 116 HOH HOH . 
P 4 HOH D 33 333 189 HOH HOH . 
P 4 HOH D 34 334 151 HOH HOH . 
P 4 HOH D 35 335 264 HOH HOH . 
P 4 HOH D 36 336 112 HOH HOH . 
P 4 HOH D 37 337 3 HOH HOH . 
P 4 HOH D 38 338 2 HOH HOH . 
P 4 HOH D 39 339 242 HOH HOH . 
P 4 HOH D 40 340 246 HOH HOH . 
P 4 HOH D 41 341 263 HOH HOH . 
P 4 HOH D 42 342 249 HOH HOH . 
P 4 HOH D 43 343 243 HOH HOH . 
P 4 HOH D 44 344 159 HOH HOH . 
P 4 HOH D 45 345 245 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 3 50.203 -18.105 -3.705 1 42.67 ? C1 GOL 202 D 1 
HETATM 2 O O1 GOL . . . L 3 50.598 -16.786 -3.392 1 43.27 ? O1 GOL 202 D 1 
HETATM 3 C C2 GOL . . . L 3 48.683 -18.125 -3.867 1 42.15 ? C2 GOL 202 D 1 
HETATM 4 O O2 GOL . . . L 3 48.35 -18.468 -5.184 1 42.19 ? O2 GOL 202 D 1 
HETATM 5 C C3 GOL . . . L 3 48.012 -19.01 -2.798 1 43.73 ? C3 GOL 202 D 1 
HETATM 6 O O3 GOL . . . L 3 48.406 -20.358 -2.842 1 46.16 ? O3 GOL 202 D 1 
HETATM 7 H H11 GOL . . . L 3 50.463 -18.703 -2.987 1 51.2 ? H11 GOL 202 D 1 
HETATM 8 H H12 GOL . . . L 3 50.624 -18.385 -4.533 1 51.2 ? H12 GOL 202 D 1 
HETATM 9 H HO1 GOL . . . L 3 51.416 -16.782 -3.163 1 51.92 ? HO1 GOL 202 D 1 
HETATM 10 H H2 GOL . . . L 3 48.369 -17.218 -3.722 1 50.58 ? H2 GOL 202 D 1 
HETATM 11 H HO2 GOL . . . L 3 48.895 -19.054 -5.471 1 50.63 ? HO2 GOL 202 D 1 
HETATM 12 H H31 GOL . . . L 3 47.05 -18.965 -2.92 1 52.48 ? H31 GOL 202 D 1 
HETATM 13 H H32 GOL . . . L 3 48.229 -18.654 -1.922 1 52.48 ? H32 GOL 202 D 1 
HETATM 14 H HO3 GOL . . . L 3 48.487 -20.656 -2.05 1 55.39 ? HO3 GOL 202 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#