data_6E63
#
_model_server_result.job_id            ytvC4Uq_veBWPTXoqmDS0g 
_model_server_result.datetime_utc      '2024-10-19 02:23:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6e63 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    6E63 
#
_exptl.entry_id    6E63 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6E63 
_cell.length_a            51.994 
_cell.length_b            120.907 
_cell.length_c            177.562 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6E63 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,I,J,K 1 1 
D,E,F,H,L,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 P CYS 298 1_555 A SG CYS 37 P CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 54 P CYS 344 1_555 A SG CYS 122 P CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 A SG CYS 62 P CYS 352 1_555 A SG CYS 120 P CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf5 B SG CYS 146 H CYS 140 1_555 B SG CYS 202 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf6 B SG CYS 222 H CYS 216 1_555 C SG CYS 215 L CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf7 C SG CYS 22 L CYS 23 1_555 C SG CYS 91 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf8 C SG CYS 138 L CYS 134 1_555 C SG CYS 197 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 D SG CYS 8 A CYS 298 1_555 D SG CYS 37 A CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 D SG CYS 54 A CYS 344 1_555 D SG CYS 122 A CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf11 D SG CYS 62 A CYS 352 1_555 D SG CYS 120 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf12 E SG CYS 22 B CYS 22 1_555 E SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf13 E SG CYS 146 B CYS 140 1_555 E SG CYS 202 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf14 F SG CYS 22 C CYS 23 1_555 F SG CYS 91 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf15 F SG CYS 138 C CYS 134 1_555 F SG CYS 197 C CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
_atom_sites.entry_id                     6E63 
_atom_sites.fract_transf_matrix[1][1]    0.019233 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008271 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005632 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 GOL H 1 301 1 GOL GOL . 
H 4 GOL B 1 301 2 GOL GOL . 
I 5 HOH P 1 501 81 HOH HOH . 
I 5 HOH P 2 502 94 HOH HOH . 
I 5 HOH P 3 503 163 HOH HOH . 
I 5 HOH P 4 504 161 HOH HOH . 
I 5 HOH P 5 505 116 HOH HOH . 
I 5 HOH P 6 506 169 HOH HOH . 
I 5 HOH P 7 507 21 HOH HOH . 
I 5 HOH P 8 508 51 HOH HOH . 
I 5 HOH P 9 509 103 HOH HOH . 
I 5 HOH P 10 510 44 HOH HOH . 
I 5 HOH P 11 511 150 HOH HOH . 
I 5 HOH P 12 512 93 HOH HOH . 
I 5 HOH P 13 513 136 HOH HOH . 
I 5 HOH P 14 514 141 HOH HOH . 
I 5 HOH P 15 515 92 HOH HOH . 
I 5 HOH P 16 516 176 HOH HOH . 
I 5 HOH P 17 517 114 HOH HOH . 
I 5 HOH P 18 518 132 HOH HOH . 
I 5 HOH P 19 519 186 HOH HOH . 
I 5 HOH P 20 520 149 HOH HOH . 
I 5 HOH P 21 521 177 HOH HOH . 
J 5 HOH H 1 401 172 HOH HOH . 
J 5 HOH H 2 402 143 HOH HOH . 
J 5 HOH H 3 403 146 HOH HOH . 
J 5 HOH H 4 404 117 HOH HOH . 
J 5 HOH H 5 405 71 HOH HOH . 
J 5 HOH H 6 406 17 HOH HOH . 
J 5 HOH H 7 407 63 HOH HOH . 
J 5 HOH H 8 408 39 HOH HOH . 
J 5 HOH H 9 409 64 HOH HOH . 
J 5 HOH H 10 410 26 HOH HOH . 
J 5 HOH H 11 411 148 HOH HOH . 
J 5 HOH H 12 412 24 HOH HOH . 
J 5 HOH H 13 413 42 HOH HOH . 
J 5 HOH H 14 414 110 HOH HOH . 
J 5 HOH H 15 415 28 HOH HOH . 
J 5 HOH H 16 416 29 HOH HOH . 
J 5 HOH H 17 417 45 HOH HOH . 
J 5 HOH H 18 418 77 HOH HOH . 
J 5 HOH H 19 419 65 HOH HOH . 
J 5 HOH H 20 420 153 HOH HOH . 
J 5 HOH H 21 421 60 HOH HOH . 
J 5 HOH H 22 422 70 HOH HOH . 
J 5 HOH H 23 423 48 HOH HOH . 
J 5 HOH H 24 424 98 HOH HOH . 
J 5 HOH H 25 425 167 HOH HOH . 
J 5 HOH H 26 426 178 HOH HOH . 
J 5 HOH H 27 427 59 HOH HOH . 
J 5 HOH H 28 428 33 HOH HOH . 
J 5 HOH H 29 429 174 HOH HOH . 
J 5 HOH H 30 430 118 HOH HOH . 
J 5 HOH H 31 431 104 HOH HOH . 
J 5 HOH H 32 432 54 HOH HOH . 
J 5 HOH H 33 433 46 HOH HOH . 
J 5 HOH H 34 434 157 HOH HOH . 
J 5 HOH H 35 435 90 HOH HOH . 
J 5 HOH H 36 436 164 HOH HOH . 
J 5 HOH H 37 437 171 HOH HOH . 
J 5 HOH H 38 438 185 HOH HOH . 
J 5 HOH H 39 439 106 HOH HOH . 
J 5 HOH H 40 440 170 HOH HOH . 
J 5 HOH H 41 441 168 HOH HOH . 
K 5 HOH L 1 301 181 HOH HOH . 
K 5 HOH L 2 302 82 HOH HOH . 
K 5 HOH L 3 303 11 HOH HOH . 
K 5 HOH L 4 304 68 HOH HOH . 
K 5 HOH L 5 305 34 HOH HOH . 
K 5 HOH L 6 306 121 HOH HOH . 
K 5 HOH L 7 307 38 HOH HOH . 
K 5 HOH L 8 308 145 HOH HOH . 
K 5 HOH L 9 309 87 HOH HOH . 
K 5 HOH L 10 310 188 HOH HOH . 
K 5 HOH L 11 311 30 HOH HOH . 
K 5 HOH L 12 312 20 HOH HOH . 
K 5 HOH L 13 313 16 HOH HOH . 
K 5 HOH L 14 314 88 HOH HOH . 
K 5 HOH L 15 315 111 HOH HOH . 
K 5 HOH L 16 316 127 HOH HOH . 
K 5 HOH L 17 317 9 HOH HOH . 
K 5 HOH L 18 318 53 HOH HOH . 
K 5 HOH L 19 319 31 HOH HOH . 
K 5 HOH L 20 320 165 HOH HOH . 
K 5 HOH L 21 321 120 HOH HOH . 
K 5 HOH L 22 322 52 HOH HOH . 
K 5 HOH L 23 323 67 HOH HOH . 
K 5 HOH L 24 324 142 HOH HOH . 
K 5 HOH L 25 325 83 HOH HOH . 
K 5 HOH L 26 326 75 HOH HOH . 
K 5 HOH L 27 327 112 HOH HOH . 
K 5 HOH L 28 328 179 HOH HOH . 
K 5 HOH L 29 329 166 HOH HOH . 
K 5 HOH L 30 330 91 HOH HOH . 
K 5 HOH L 31 331 74 HOH HOH . 
K 5 HOH L 32 332 96 HOH HOH . 
K 5 HOH L 33 333 131 HOH HOH . 
K 5 HOH L 34 334 173 HOH HOH . 
L 5 HOH A 1 501 37 HOH HOH . 
L 5 HOH A 2 502 19 HOH HOH . 
L 5 HOH A 3 503 23 HOH HOH . 
L 5 HOH A 4 504 124 HOH HOH . 
L 5 HOH A 5 505 10 HOH HOH . 
L 5 HOH A 6 506 89 HOH HOH . 
L 5 HOH A 7 507 130 HOH HOH . 
L 5 HOH A 8 508 129 HOH HOH . 
L 5 HOH A 9 509 122 HOH HOH . 
L 5 HOH A 10 510 86 HOH HOH . 
L 5 HOH A 11 511 156 HOH HOH . 
L 5 HOH A 12 512 1 HOH HOH . 
L 5 HOH A 13 513 72 HOH HOH . 
L 5 HOH A 14 514 100 HOH HOH . 
L 5 HOH A 15 515 101 HOH HOH . 
L 5 HOH A 16 516 159 HOH HOH . 
L 5 HOH A 17 517 182 HOH HOH . 
L 5 HOH A 18 518 144 HOH HOH . 
L 5 HOH A 19 519 84 HOH HOH . 
L 5 HOH A 20 520 189 HOH HOH . 
L 5 HOH A 21 521 138 HOH HOH . 
L 5 HOH A 22 522 134 HOH HOH . 
M 5 HOH B 1 401 62 HOH HOH . 
M 5 HOH B 2 402 76 HOH HOH . 
M 5 HOH B 3 403 25 HOH HOH . 
M 5 HOH B 4 404 43 HOH HOH . 
M 5 HOH B 5 405 133 HOH HOH . 
M 5 HOH B 6 406 4 HOH HOH . 
M 5 HOH B 7 407 7 HOH HOH . 
M 5 HOH B 8 408 5 HOH HOH . 
M 5 HOH B 9 409 79 HOH HOH . 
M 5 HOH B 10 410 126 HOH HOH . 
M 5 HOH B 11 411 108 HOH HOH . 
M 5 HOH B 12 412 78 HOH HOH . 
M 5 HOH B 13 413 180 HOH HOH . 
M 5 HOH B 14 414 6 HOH HOH . 
M 5 HOH B 15 415 85 HOH HOH . 
M 5 HOH B 16 416 3 HOH HOH . 
M 5 HOH B 17 417 58 HOH HOH . 
M 5 HOH B 18 418 140 HOH HOH . 
M 5 HOH B 19 419 99 HOH HOH . 
M 5 HOH B 20 420 40 HOH HOH . 
M 5 HOH B 21 421 27 HOH HOH . 
M 5 HOH B 22 422 152 HOH HOH . 
M 5 HOH B 23 423 107 HOH HOH . 
M 5 HOH B 24 424 13 HOH HOH . 
M 5 HOH B 25 425 183 HOH HOH . 
M 5 HOH B 26 426 137 HOH HOH . 
M 5 HOH B 27 427 123 HOH HOH . 
M 5 HOH B 28 428 97 HOH HOH . 
M 5 HOH B 29 429 69 HOH HOH . 
M 5 HOH B 30 430 160 HOH HOH . 
M 5 HOH B 31 431 41 HOH HOH . 
M 5 HOH B 32 432 66 HOH HOH . 
M 5 HOH B 33 433 139 HOH HOH . 
N 5 HOH C 1 301 22 HOH HOH . 
N 5 HOH C 2 302 8 HOH HOH . 
N 5 HOH C 3 303 158 HOH HOH . 
N 5 HOH C 4 304 151 HOH HOH . 
N 5 HOH C 5 305 15 HOH HOH . 
N 5 HOH C 6 306 80 HOH HOH . 
N 5 HOH C 7 307 47 HOH HOH . 
N 5 HOH C 8 308 184 HOH HOH . 
N 5 HOH C 9 309 102 HOH HOH . 
N 5 HOH C 10 310 57 HOH HOH . 
N 5 HOH C 11 311 35 HOH HOH . 
N 5 HOH C 12 312 49 HOH HOH . 
N 5 HOH C 13 313 162 HOH HOH . 
N 5 HOH C 14 314 2 HOH HOH . 
N 5 HOH C 15 315 147 HOH HOH . 
N 5 HOH C 16 316 12 HOH HOH . 
N 5 HOH C 17 317 18 HOH HOH . 
N 5 HOH C 18 318 56 HOH HOH . 
N 5 HOH C 19 319 73 HOH HOH . 
N 5 HOH C 20 320 175 HOH HOH . 
N 5 HOH C 21 321 119 HOH HOH . 
N 5 HOH C 22 322 36 HOH HOH . 
N 5 HOH C 23 323 155 HOH HOH . 
N 5 HOH C 24 324 32 HOH HOH . 
N 5 HOH C 25 325 61 HOH HOH . 
N 5 HOH C 26 326 55 HOH HOH . 
N 5 HOH C 27 327 128 HOH HOH . 
N 5 HOH C 28 328 113 HOH HOH . 
N 5 HOH C 29 329 154 HOH HOH . 
N 5 HOH C 30 330 115 HOH HOH . 
N 5 HOH C 31 331 105 HOH HOH . 
N 5 HOH C 32 332 14 HOH HOH . 
N 5 HOH C 33 333 50 HOH HOH . 
N 5 HOH C 34 334 135 HOH HOH . 
N 5 HOH C 35 335 109 HOH HOH . 
N 5 HOH C 36 336 95 HOH HOH . 
N 5 HOH C 37 337 125 HOH HOH . 
N 5 HOH C 38 338 187 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 4 -1.977 19.304 78.834 1 37.28 ? C1 GOL 301 B 1 
HETATM 2 O O1 GOL . . . H 4 -0.831 20.134 78.877 1 33.89 ? O1 GOL 301 B 1 
HETATM 3 C C2 GOL . . . H 4 -1.997 18.353 80.098 1 41.9 ? C2 GOL 301 B 1 
HETATM 4 O O2 GOL . . . H 4 -2.551 17.113 79.834 1 41.97 ? O2 GOL 301 B 1 
HETATM 5 C C3 GOL . . . H 4 -2.849 19.04 81.167 1 35.96 ? C3 GOL 301 B 1 
HETATM 6 O O3 GOL . . . H 4 -3.055 18.037 82.118 1 46.41 ? O3 GOL 301 B 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           359 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#