data_6E6C # _model_server_result.job_id 5t2hQFprEvAVN6I3-_PZhA _model_server_result.datetime_utc '2024-11-28 15:50:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6E6C # _exptl.entry_id 6E6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.31 _cell.angle_gamma 90 _cell.entry_id 6E6C _cell.length_a 54.6 _cell.length_b 47.753 _cell.length_c 57.037 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 3 A GLU 3 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A OG SER 17 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc3 A OE1 GLU 76 A GLU 76 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc4 A OE2 GLU 76 A GLU 76 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc5 B MG MG . A MG 201 1_555 C O1G GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc6 B MG MG . A MG 201 1_555 C O2B GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc7 B MG MG . A MG 201 1_555 E O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc8 B MG MG . A MG 201 1_555 E O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc9 B MG MG . A MG 201 1_555 E O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc10 D CA CA . A CA 203 1_555 E O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc11 D CA CA . A CA 203 1_555 E O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc12 D CA CA . A CA 203 1_555 E O HOH . A HOH 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 6E6C _atom_sites.fract_transf_matrix[1][1] 0.018315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009866 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 201 527 MG MG . C 3 GNP A 1 202 528 GNP GNP . D 4 CA A 1 203 529 CA CA . E 5 HOH A 1 301 100 HOH HOH . E 5 HOH A 2 302 85 HOH HOH . E 5 HOH A 3 303 98 HOH HOH . E 5 HOH A 4 304 86 HOH HOH . E 5 HOH A 5 305 64 HOH HOH . E 5 HOH A 6 306 71 HOH HOH . E 5 HOH A 7 307 67 HOH HOH . E 5 HOH A 8 308 69 HOH HOH . E 5 HOH A 9 309 76 HOH HOH . E 5 HOH A 10 310 42 HOH HOH . E 5 HOH A 11 311 41 HOH HOH . E 5 HOH A 12 312 72 HOH HOH . E 5 HOH A 13 313 29 HOH HOH . E 5 HOH A 14 314 63 HOH HOH . E 5 HOH A 15 315 21 HOH HOH . E 5 HOH A 16 316 47 HOH HOH . E 5 HOH A 17 317 18 HOH HOH . E 5 HOH A 18 318 94 HOH HOH . E 5 HOH A 19 319 33 HOH HOH . E 5 HOH A 20 320 15 HOH HOH . E 5 HOH A 21 321 38 HOH HOH . E 5 HOH A 22 322 5 HOH HOH . E 5 HOH A 23 323 23 HOH HOH . E 5 HOH A 24 324 84 HOH HOH . E 5 HOH A 25 325 39 HOH HOH . E 5 HOH A 26 326 20 HOH HOH . E 5 HOH A 27 327 8 HOH HOH . E 5 HOH A 28 328 87 HOH HOH . E 5 HOH A 29 329 28 HOH HOH . E 5 HOH A 30 330 6 HOH HOH . E 5 HOH A 31 331 2 HOH HOH . E 5 HOH A 32 332 17 HOH HOH . E 5 HOH A 33 333 16 HOH HOH . E 5 HOH A 34 334 25 HOH HOH . E 5 HOH A 35 335 4 HOH HOH . E 5 HOH A 36 336 58 HOH HOH . E 5 HOH A 37 337 1 HOH HOH . E 5 HOH A 38 338 22 HOH HOH . E 5 HOH A 39 339 97 HOH HOH . E 5 HOH A 40 340 27 HOH HOH . E 5 HOH A 41 341 96 HOH HOH . E 5 HOH A 42 342 99 HOH HOH . E 5 HOH A 43 343 59 HOH HOH . E 5 HOH A 44 344 77 HOH HOH . E 5 HOH A 45 345 95 HOH HOH . E 5 HOH A 46 346 36 HOH HOH . E 5 HOH A 47 347 75 HOH HOH . E 5 HOH A 48 348 92 HOH HOH . E 5 HOH A 49 349 7 HOH HOH . E 5 HOH A 50 350 9 HOH HOH . E 5 HOH A 51 351 50 HOH HOH . E 5 HOH A 52 352 44 HOH HOH . E 5 HOH A 53 353 24 HOH HOH . E 5 HOH A 54 354 31 HOH HOH . E 5 HOH A 55 355 53 HOH HOH . E 5 HOH A 56 356 35 HOH HOH . E 5 HOH A 57 357 45 HOH HOH . E 5 HOH A 58 358 57 HOH HOH . E 5 HOH A 59 359 82 HOH HOH . E 5 HOH A 60 360 11 HOH HOH . E 5 HOH A 61 361 79 HOH HOH . E 5 HOH A 62 362 52 HOH HOH . E 5 HOH A 63 363 19 HOH HOH . E 5 HOH A 64 364 32 HOH HOH . E 5 HOH A 65 365 26 HOH HOH . E 5 HOH A 66 366 90 HOH HOH . E 5 HOH A 67 367 88 HOH HOH . E 5 HOH A 68 368 83 HOH HOH . E 5 HOH A 69 369 37 HOH HOH . E 5 HOH A 70 370 73 HOH HOH . E 5 HOH A 71 371 93 HOH HOH . E 5 HOH A 72 372 10 HOH HOH . E 5 HOH A 73 373 48 HOH HOH . E 5 HOH A 74 374 61 HOH HOH . E 5 HOH A 75 375 13 HOH HOH . E 5 HOH A 76 376 78 HOH HOH . E 5 HOH A 77 377 34 HOH HOH . E 5 HOH A 78 378 49 HOH HOH . E 5 HOH A 79 379 54 HOH HOH . E 5 HOH A 80 380 91 HOH HOH . E 5 HOH A 81 381 74 HOH HOH . E 5 HOH A 82 382 40 HOH HOH . E 5 HOH A 83 383 55 HOH HOH . E 5 HOH A 84 384 89 HOH HOH . E 5 HOH A 85 385 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 3 40.441 -37.882 -82.324 1 28.44 ? PG GNP 202 A 1 HETATM 2 O O1G GNP . . . C 3 40.762 -39.336 -82.094 1 26.95 ? O1G GNP 202 A 1 HETATM 3 O O2G GNP . . . C 3 39.115 -37.403 -81.771 1 28.32 ? O2G GNP 202 A 1 HETATM 4 O O3G GNP . . . C 3 41.466 -36.946 -81.776 1 27.6 ? O3G GNP 202 A 1 HETATM 5 N N3B GNP . . . C 3 40.335 -37.683 -83.918 1 26.66 ? N3B GNP 202 A 1 HETATM 6 P PB GNP . . . C 3 41.326 -38.271 -85.028 1 24.49 ? PB GNP 202 A 1 HETATM 7 O O1B GNP . . . C 3 42.556 -37.432 -85.123 1 21.33 ? O1B GNP 202 A 1 HETATM 8 O O2B GNP . . . C 3 41.502 -39.724 -84.785 1 26.19 ? O2B GNP 202 A 1 HETATM 9 O O3A GNP . . . C 3 40.684 -38.063 -86.389 1 22.32 ? O3A GNP 202 A 1 HETATM 10 P PA GNP . . . C 3 39.715 -38.951 -87.165 1 23.39 ? PA GNP 202 A 1 HETATM 11 O O1A GNP . . . C 3 40.462 -40.045 -87.817 1 21.5 ? O1A GNP 202 A 1 HETATM 12 O O2A GNP . . . C 3 38.591 -39.401 -86.307 1 27.37 ? O2A GNP 202 A 1 HETATM 13 O O5' GNP . . . C 3 39.163 -38.022 -88.335 1 25.33 ? O5' GNP 202 A 1 HETATM 14 C C5' GNP . . . C 3 38.434 -36.805 -88.08 1 24.99 ? C5' GNP 202 A 1 HETATM 15 C C4' GNP . . . C 3 37.504 -36.489 -89.241 1 24.85 ? C4' GNP 202 A 1 HETATM 16 O O4' GNP . . . C 3 38.32 -36.08 -90.367 1 23.46 ? O4' GNP 202 A 1 HETATM 17 C C3' GNP . . . C 3 36.665 -37.669 -89.756 1 30.15 ? C3' GNP 202 A 1 HETATM 18 O O3' GNP . . . C 3 35.329 -37.289 -90.119 1 31.74 ? O3' GNP 202 A 1 HETATM 19 C C2' GNP . . . C 3 37.438 -38.165 -90.978 1 26.48 ? C2' GNP 202 A 1 HETATM 20 O O2' GNP . . . C 3 36.632 -38.783 -91.966 1 25.71 ? O2' GNP 202 A 1 HETATM 21 C C1' GNP . . . C 3 37.999 -36.86 -91.505 1 23.55 ? C1' GNP 202 A 1 HETATM 22 N N9 GNP . . . C 3 39.265 -37.024 -92.205 1 20.35 ? N9 GNP 202 A 1 HETATM 23 C C8 GNP . . . C 3 40.395 -37.645 -91.714 1 22.54 ? C8 GNP 202 A 1 HETATM 24 N N7 GNP . . . C 3 41.403 -37.615 -92.548 1 20.73 ? N7 GNP 202 A 1 HETATM 25 C C5 GNP . . . C 3 40.911 -36.937 -93.647 1 20.64 ? C5 GNP 202 A 1 HETATM 26 C C6 GNP . . . C 3 41.541 -36.613 -94.861 1 19.15 ? C6 GNP 202 A 1 HETATM 27 O O6 GNP . . . C 3 42.706 -36.865 -95.191 1 17.39 ? O6 GNP 202 A 1 HETATM 28 N N1 GNP . . . C 3 40.692 -35.912 -95.713 1 19.21 ? N1 GNP 202 A 1 HETATM 29 C C2 GNP . . . C 3 39.389 -35.579 -95.404 1 20.53 ? C2 GNP 202 A 1 HETATM 30 N N2 GNP . . . C 3 38.695 -34.903 -96.326 1 21.12 ? N2 GNP 202 A 1 HETATM 31 N N3 GNP . . . C 3 38.786 -35.888 -94.278 1 23.84 ? N3 GNP 202 A 1 HETATM 32 C C4 GNP . . . C 3 39.599 -36.564 -93.449 1 21.16 ? C4 GNP 202 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #