data_6E6F # _model_server_result.job_id NG-MpmsPHNoRl3aM4kFZbw _model_server_result.datetime_utc '2024-11-13 05:35:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e6f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6E6F # _exptl.entry_id 6E6F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.37 _cell.angle_gamma 90 _cell.entry_id 6E6F _cell.length_a 114.486 _cell.length_b 39.096 _cell.length_c 89.319 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E6F _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc2 C O2G GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc3 C O2B GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 6E6F _atom_sites.fract_transf_matrix[1][1] 0.008735 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005974 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GNP A 1 201 528 GNP GNP . D 3 MG A 1 202 529 MG MG . E 2 GNP B 1 201 528 GNP GNP . F 4 HOH A 1 301 3 HOH HOH . F 4 HOH A 2 302 4 HOH HOH . F 4 HOH A 3 303 1 HOH HOH . F 4 HOH A 4 304 2 HOH HOH . G 4 HOH B 1 301 7 HOH HOH . G 4 HOH B 2 302 5 HOH HOH . G 4 HOH B 3 303 8 HOH HOH . G 4 HOH B 4 304 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 2 -48.412 -47.561 -38.409 1 51.08 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . C 2 -47.144 -47.954 -39.134 1 37.11 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . C 2 -49.01 -48.594 -37.459 1 41.54 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . C 2 -48.26 -46.299 -37.582 1 44.52 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . C 2 -49.458 -47.218 -39.565 1 33.6 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . C 2 -50.245 -48.347 -40.342 1 23.17 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . C 2 -49.433 -48.933 -41.426 1 24.03 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . C 2 -50.826 -49.243 -39.311 1 32.37 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . C 2 -51.42 -47.658 -40.997 1 30.08 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . C 2 -52.791 -47.623 -40.337 1 29.88 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . C 2 -53.445 -48.948 -40.52 1 25.78 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . C 2 -52.663 -47.089 -38.961 1 33.52 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . C 2 -53.567 -46.533 -41.173 1 22.42 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . C 2 -52.874 -45.385 -41.598 1 23.74 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . C 2 -53.923 -44.395 -41.98 1 25.9 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . C 2 -54.174 -44.521 -43.399 1 27.98 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . C 2 -55.207 -44.746 -41.233 1 28.14 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . C 2 -55.677 -43.645 -40.477 1 31.02 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . C 2 -56.205 -45.177 -42.313 1 30.44 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . C 2 -57.488 -44.594 -42.181 1 26.29 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . C 2 -55.574 -44.705 -43.621 1 34.48 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . C 2 -55.85 -45.651 -44.713 1 34.54 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . C 2 -55.481 -46.971 -44.781 1 32.53 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . C 2 -55.858 -47.569 -45.87 1 29.02 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . C 2 -56.535 -46.588 -46.575 1 30.09 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . C 2 -57.177 -46.646 -47.841 1 39.05 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . C 2 -57.272 -47.619 -48.613 1 45.05 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . C 2 -57.749 -45.433 -48.214 1 33.23 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . C 2 -57.695 -44.313 -47.442 1 34.96 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . C 2 -58.299 -43.235 -47.94 1 37.08 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . C 2 -57.096 -44.239 -46.258 1 38.62 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . C 2 -56.542 -45.41 -45.881 1 31.82 ? C4 GNP 201 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #