data_6E6F # _model_server_result.job_id E9fR81tR5wcwur0sHRkBiA _model_server_result.datetime_utc '2024-12-01 07:20:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e6f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 6E6F # _exptl.entry_id 6E6F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.37 _cell.angle_gamma 90 _cell.entry_id 6E6F _cell.length_a 114.486 _cell.length_b 39.096 _cell.length_c 89.319 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E6F _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc2 C O2G GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc3 C O2B GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 6E6F _atom_sites.fract_transf_matrix[1][1] 0.008735 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005974 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GNP A 1 201 528 GNP GNP . D 3 MG A 1 202 529 MG MG . E 2 GNP B 1 201 528 GNP GNP . F 4 HOH A 1 301 3 HOH HOH . F 4 HOH A 2 302 4 HOH HOH . F 4 HOH A 3 303 1 HOH HOH . F 4 HOH A 4 304 2 HOH HOH . G 4 HOH B 1 301 7 HOH HOH . G 4 HOH B 2 302 5 HOH HOH . G 4 HOH B 3 303 8 HOH HOH . G 4 HOH B 4 304 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . E 2 -49.651 -58.281 -89.477 1 88.48 ? PG GNP 201 B 1 HETATM 2 O O1G GNP . . . E 2 -49.499 -58.026 -90.969 1 72.33 ? O1G GNP 201 B 1 HETATM 3 O O2G GNP . . . E 2 -48.689 -59.31 -88.9 1 61.02 ? O2G GNP 201 B 1 HETATM 4 O O3G GNP . . . E 2 -49.609 -57.05 -88.591 1 68.3 ? O3G GNP 201 B 1 HETATM 5 N N3B GNP . . . E 2 -51.116 -58.799 -89.211 1 53.71 ? N3B GNP 201 B 1 HETATM 6 P PB GNP . . . E 2 -51.506 -59.254 -87.754 1 44.94 ? PB GNP 201 B 1 HETATM 7 O O1B GNP . . . E 2 -51.357 -60.725 -87.617 1 38.09 ? O1B GNP 201 B 1 HETATM 8 O O2B GNP . . . E 2 -50.773 -58.431 -86.768 1 51.53 ? O2B GNP 201 B 1 HETATM 9 O O3A GNP . . . E 2 -52.95 -58.804 -87.605 1 52.26 ? O3A GNP 201 B 1 HETATM 10 P PA GNP . . . E 2 -53.289 -57.512 -86.859 1 51.26 ? PA GNP 201 B 1 HETATM 11 O O1A GNP . . . E 2 -52.365 -56.442 -87.311 1 53.5 ? O1A GNP 201 B 1 HETATM 12 O O2A GNP . . . E 2 -53.366 -57.828 -85.408 1 33.51 ? O2A GNP 201 B 1 HETATM 13 O O5' GNP . . . E 2 -54.731 -57.066 -87.345 1 48.14 ? O5' GNP 201 B 1 HETATM 14 C C5' GNP . . . E 2 -55.029 -57.138 -88.743 1 49.03 ? C5' GNP 201 B 1 HETATM 15 C C4' GNP . . . E 2 -56.24 -56.321 -89.208 1 59.52 ? C4' GNP 201 B 1 HETATM 16 O O4' GNP . . . E 2 -57.475 -57.052 -88.974 1 52.3 ? O4' GNP 201 B 1 HETATM 17 C C3' GNP . . . E 2 -56.442 -54.928 -88.594 1 68.25 ? C3' GNP 201 B 1 HETATM 18 O O3' GNP . . . E 2 -56.973 -53.964 -89.527 1 73.1 ? O3' GNP 201 B 1 HETATM 19 C C2' GNP . . . E 2 -57.44 -55.217 -87.479 1 54.51 ? C2' GNP 201 B 1 HETATM 20 O O2' GNP . . . E 2 -58.178 -54.064 -87.11 1 57.05 ? O2' GNP 201 B 1 HETATM 21 C C1' GNP . . . E 2 -58.284 -56.343 -88.074 1 42.54 ? C1' GNP 201 B 1 HETATM 22 N N9 GNP . . . E 2 -58.548 -57.288 -87.025 1 38.53 ? N9 GNP 201 B 1 HETATM 23 C C8 GNP . . . E 2 -57.619 -57.787 -86.165 1 42.32 ? C8 GNP 201 B 1 HETATM 24 N N7 GNP . . . E 2 -58.133 -58.618 -85.303 1 47.42 ? N7 GNP 201 B 1 HETATM 25 C C5 GNP . . . E 2 -59.483 -58.671 -85.614 1 41.16 ? C5 GNP 201 B 1 HETATM 26 C C6 GNP . . . E 2 -60.537 -59.397 -85.013 1 35.9 ? C6 GNP 201 B 1 HETATM 27 O O6 GNP . . . E 2 -60.48 -60.17 -84.049 1 35.75 ? O6 GNP 201 B 1 HETATM 28 N N1 GNP . . . E 2 -61.751 -59.143 -85.639 1 30.49 ? N1 GNP 201 B 1 HETATM 29 C C2 GNP . . . E 2 -61.908 -58.306 -86.712 1 31.28 ? C2 GNP 201 B 1 HETATM 30 N N2 GNP . . . E 2 -63.141 -58.183 -87.196 1 33.59 ? N2 GNP 201 B 1 HETATM 31 N N3 GNP . . . E 2 -60.934 -57.619 -87.288 1 43.03 ? N3 GNP 201 B 1 HETATM 32 C C4 GNP . . . E 2 -59.748 -57.848 -86.682 1 44.06 ? C4 GNP 201 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #