data_6E6H # _model_server_result.job_id 1sdQssEgnSLZGKPYzxa_4Q _model_server_result.datetime_utc '2024-12-01 07:21:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e6h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6E6H # _exptl.entry_id 6E6H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.4 _cell.angle_gamma 90 _cell.entry_id 6E6H _cell.length_a 59.553 _cell.length_b 39.565 _cell.length_c 65.016 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E6H _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc2 B MG MG . A MG 201 1_555 C O1G GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc3 B MG MG . A MG 201 1_555 C O1B GNP . A GNP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc4 B MG MG . A MG 201 1_555 D O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc5 B MG MG . A MG 201 1_555 D O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc6 B MG MG . A MG 201 1_555 D O HOH . A HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 6E6H _atom_sites.fract_transf_matrix[1][1] 0.016792 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004942 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 201 527 MG MG . C 3 GNP A 1 202 528 GNP GNP . D 4 HOH A 1 301 21 HOH HOH . D 4 HOH A 2 302 29 HOH HOH . D 4 HOH A 3 303 86 HOH HOH . D 4 HOH A 4 304 39 HOH HOH . D 4 HOH A 5 305 28 HOH HOH . D 4 HOH A 6 306 30 HOH HOH . D 4 HOH A 7 307 2 HOH HOH . D 4 HOH A 8 308 63 HOH HOH . D 4 HOH A 9 309 79 HOH HOH . D 4 HOH A 10 310 3 HOH HOH . D 4 HOH A 11 311 22 HOH HOH . D 4 HOH A 12 312 14 HOH HOH . D 4 HOH A 13 313 90 HOH HOH . D 4 HOH A 14 314 85 HOH HOH . D 4 HOH A 15 315 12 HOH HOH . D 4 HOH A 16 316 26 HOH HOH . D 4 HOH A 17 317 10 HOH HOH . D 4 HOH A 18 318 16 HOH HOH . D 4 HOH A 19 319 78 HOH HOH . D 4 HOH A 20 320 15 HOH HOH . D 4 HOH A 21 321 6 HOH HOH . D 4 HOH A 22 322 87 HOH HOH . D 4 HOH A 23 323 94 HOH HOH . D 4 HOH A 24 324 1 HOH HOH . D 4 HOH A 25 325 34 HOH HOH . D 4 HOH A 26 326 17 HOH HOH . D 4 HOH A 27 327 65 HOH HOH . D 4 HOH A 28 328 76 HOH HOH . D 4 HOH A 29 329 35 HOH HOH . D 4 HOH A 30 330 13 HOH HOH . D 4 HOH A 31 331 5 HOH HOH . D 4 HOH A 32 332 89 HOH HOH . D 4 HOH A 33 333 8 HOH HOH . D 4 HOH A 34 334 27 HOH HOH . D 4 HOH A 35 335 4 HOH HOH . D 4 HOH A 36 336 74 HOH HOH . D 4 HOH A 37 337 43 HOH HOH . D 4 HOH A 38 338 31 HOH HOH . D 4 HOH A 39 339 7 HOH HOH . D 4 HOH A 40 340 25 HOH HOH . D 4 HOH A 41 341 52 HOH HOH . D 4 HOH A 42 342 82 HOH HOH . D 4 HOH A 43 343 46 HOH HOH . D 4 HOH A 44 344 48 HOH HOH . D 4 HOH A 45 345 61 HOH HOH . D 4 HOH A 46 346 72 HOH HOH . D 4 HOH A 47 347 36 HOH HOH . D 4 HOH A 48 348 38 HOH HOH . D 4 HOH A 49 349 75 HOH HOH . D 4 HOH A 50 350 84 HOH HOH . D 4 HOH A 51 351 19 HOH HOH . D 4 HOH A 52 352 47 HOH HOH . D 4 HOH A 53 353 49 HOH HOH . D 4 HOH A 54 354 37 HOH HOH . D 4 HOH A 55 355 11 HOH HOH . D 4 HOH A 56 356 88 HOH HOH . D 4 HOH A 57 357 20 HOH HOH . D 4 HOH A 58 358 92 HOH HOH . D 4 HOH A 59 359 55 HOH HOH . D 4 HOH A 60 360 60 HOH HOH . D 4 HOH A 61 361 96 HOH HOH . D 4 HOH A 62 362 95 HOH HOH . D 4 HOH A 63 363 59 HOH HOH . D 4 HOH A 64 364 42 HOH HOH . D 4 HOH A 65 365 50 HOH HOH . D 4 HOH A 66 366 32 HOH HOH . D 4 HOH A 67 367 77 HOH HOH . D 4 HOH A 68 368 71 HOH HOH . D 4 HOH A 69 369 73 HOH HOH . D 4 HOH A 70 370 93 HOH HOH . D 4 HOH A 71 371 33 HOH HOH . D 4 HOH A 72 372 58 HOH HOH . D 4 HOH A 73 373 9 HOH HOH . D 4 HOH A 74 374 66 HOH HOH . D 4 HOH A 75 375 91 HOH HOH . D 4 HOH A 76 376 83 HOH HOH . D 4 HOH A 77 377 81 HOH HOH . D 4 HOH A 78 378 45 HOH HOH . D 4 HOH A 79 379 97 HOH HOH . D 4 HOH A 80 380 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 3 -7.805 -7.97 21.548 1 33.71 ? PG GNP 202 A 1 HETATM 2 O O1G GNP . . . C 3 -7.372 -8.224 20.129 1 29.7 ? O1G GNP 202 A 1 HETATM 3 O O2G GNP . . . C 3 -6.763 -8.288 22.59 1 35.45 ? O2G GNP 202 A 1 HETATM 4 O O3G GNP . . . C 3 -8.161 -6.525 21.803 1 32.07 ? O3G GNP 202 A 1 HETATM 5 N N3B GNP . . . C 3 -9.08 -8.894 21.834 1 22.59 ? N3B GNP 202 A 1 HETATM 6 P PB GNP . . . C 3 -10.385 -8.946 20.915 1 29.38 ? PB GNP 202 A 1 HETATM 7 O O1B GNP . . . C 3 -9.936 -9.176 19.525 1 21.13 ? O1B GNP 202 A 1 HETATM 8 O O2B GNP . . . C 3 -11.176 -7.702 21.12 1 26.86 ? O2B GNP 202 A 1 HETATM 9 O O3A GNP . . . C 3 -11.27 -10.118 21.358 1 17.07 ? O3A GNP 202 A 1 HETATM 10 P PA GNP . . . C 3 -11.091 -11.586 20.88 1 23.72 ? PA GNP 202 A 1 HETATM 11 O O1A GNP . . . C 3 -11.764 -11.803 19.579 1 20.39 ? O1A GNP 202 A 1 HETATM 12 O O2A GNP . . . C 3 -9.666 -11.961 20.908 1 26.58 ? O2A GNP 202 A 1 HETATM 13 O O5' GNP . . . C 3 -11.907 -12.458 21.907 1 20.47 ? O5' GNP 202 A 1 HETATM 14 C C5' GNP . . . C 3 -11.719 -12.35 23.327 1 26.45 ? C5' GNP 202 A 1 HETATM 15 C C4' GNP . . . C 3 -12.342 -13.524 24.077 1 19.46 ? C4' GNP 202 A 1 HETATM 16 O O4' GNP . . . C 3 -13.777 -13.38 24.015 1 22.21 ? O4' GNP 202 A 1 HETATM 17 C C3' GNP . . . C 3 -12.074 -14.927 23.516 1 27.55 ? C3' GNP 202 A 1 HETATM 18 O O3' GNP . . . C 3 -12.056 -15.93 24.539 1 27 ? O3' GNP 202 A 1 HETATM 19 C C2' GNP . . . C 3 -13.276 -15.153 22.604 1 26.11 ? C2' GNP 202 A 1 HETATM 20 O O2' GNP . . . C 3 -13.552 -16.516 22.365 1 27.73 ? O2' GNP 202 A 1 HETATM 21 C C1' GNP . . . C 3 -14.376 -14.518 23.435 1 20.19 ? C1' GNP 202 A 1 HETATM 22 N N9 GNP . . . C 3 -15.487 -14.029 22.642 1 20.37 ? N9 GNP 202 A 1 HETATM 23 C C8 GNP . . . C 3 -15.399 -13.173 21.559 1 18.76 ? C8 GNP 202 A 1 HETATM 24 N N7 GNP . . . C 3 -16.567 -12.889 21.041 1 18.86 ? N7 GNP 202 A 1 HETATM 25 C C5 GNP . . . C 3 -17.478 -13.591 21.827 1 17.9 ? C5 GNP 202 A 1 HETATM 26 C C6 GNP . . . C 3 -18.881 -13.668 21.734 1 19.44 ? C6 GNP 202 A 1 HETATM 27 O O6 GNP . . . C 3 -19.618 -13.106 20.923 1 20.9 ? O6 GNP 202 A 1 HETATM 28 N N1 GNP . . . C 3 -19.425 -14.486 22.724 1 24.32 ? N1 GNP 202 A 1 HETATM 29 C C2 GNP . . . C 3 -18.685 -15.157 23.676 1 22.96 ? C2 GNP 202 A 1 HETATM 30 N N2 GNP . . . C 3 -19.374 -15.91 24.548 1 19.03 ? N2 GNP 202 A 1 HETATM 31 N N3 GNP . . . C 3 -17.363 -15.092 23.777 1 25.27 ? N3 GNP 202 A 1 HETATM 32 C C4 GNP . . . C 3 -16.829 -14.297 22.82 1 17.3 ? C4 GNP 202 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #