data_6E6V # _model_server_result.job_id C4HYNLW0yHENVDortNbzpg _model_server_result.datetime_utc '2024-11-29 21:33:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6E6V # _exptl.entry_id 6E6V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 169.135 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-hydroxy-6-methyl-4-oxo-1,4-dihydropyridine-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6E6V _cell.length_a 75.51 _cell.length_b 75.51 _cell.length_c 120.16 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 47 A HIS 41 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc2 A OE2 GLU 74 A GLU 80 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc3 A OD1 ASP 102 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc4 A OD2 ASP 102 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc5 A OE2 GLU 113 A GLU 119 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc6 A O ILE 114 A ILE 120 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D OAK HWA . A HWA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D OAJ HWA . A HWA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc9 B MN MN . A MN 201 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc10 B MN MN . A MN 201 1_555 G O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc11 C MN MN . A MN 202 1_555 D OAL HWA . A HWA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc12 C MN MN . A MN 202 1_555 D OAJ HWA . A HWA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'C7 H7 N O4' _chem_comp.formula_weight 169.135 _chem_comp.id HWA _chem_comp.mon_nstd_flag . _chem_comp.name '3-hydroxy-6-methyl-4-oxo-1,4-dihydropyridine-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAL CAH HWA doub 161 n n OAJ CAI HWA sing 162 n n CAH CAI HWA sing 163 n n CAH CAG HWA sing 164 n n CAI CAD HWA doub 165 n n CAG CAB HWA doub 166 n n OAK CAE HWA doub 167 n n CAD CAE HWA sing 168 n n CAD NAC HWA sing 169 n n CAE OAF HWA sing 170 n n CAB NAC HWA sing 171 n n CAB CAA HWA sing 172 n n OAF H1 HWA sing 173 n n NAC H2 HWA sing 174 n n CAA H3 HWA sing 175 n n CAA H4 HWA sing 176 n n CAA H5 HWA sing 177 n n CAG H6 HWA sing 178 n n OAJ H7 HWA sing 179 n n # _atom_sites.entry_id 6E6V _atom_sites.fract_transf_matrix[1][1] 0.013243 _atom_sites.fract_transf_matrix[1][2] 0.007646 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 199 MN MN . C 2 MN A 1 202 200 MN MN . D 3 HWA A 1 203 201 HWA DRG . E 4 EDO A 1 204 202 EDO EDO . F 4 EDO A 1 205 203 EDO EDO . G 5 HOH A 1 301 206 HOH HOH . G 5 HOH A 2 302 211 HOH HOH . G 5 HOH A 3 303 208 HOH HOH . G 5 HOH A 4 304 213 HOH HOH . G 5 HOH A 5 305 207 HOH HOH . G 5 HOH A 6 306 204 HOH HOH . G 5 HOH A 7 307 205 HOH HOH . G 5 HOH A 8 308 215 HOH HOH . G 5 HOH A 9 309 214 HOH HOH . G 5 HOH A 10 310 209 HOH HOH . G 5 HOH A 11 311 216 HOH HOH . G 5 HOH A 12 312 212 HOH HOH . G 5 HOH A 13 313 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAF HWA . . . D 3 -18.104 16.563 16.558 1 47.62 ? OAF HWA 203 A 1 HETATM 2 C CAE HWA . . . D 3 -18.145 16.584 15.314 1 46.2 ? CAE HWA 203 A 1 HETATM 3 O OAK HWA . . . D 3 -17.262 15.934 14.649 1 39.49 ? OAK HWA 203 A 1 HETATM 4 C CAD HWA . . . D 3 -19.209 17.343 14.796 1 39.89 ? CAD HWA 203 A 1 HETATM 5 N NAC HWA . . . D 3 -19.911 18.077 15.778 1 38.24 ? NAC HWA 203 A 1 HETATM 6 C CAB HWA . . . D 3 -21.035 18.872 15.458 1 41.22 ? CAB HWA 203 A 1 HETATM 7 C CAA HWA . . . D 3 -21.729 19.606 16.492 1 42.31 ? CAA HWA 203 A 1 HETATM 8 C CAG HWA . . . D 3 -21.456 18.93 14.121 1 37.92 ? CAG HWA 203 A 1 HETATM 9 C CAH HWA . . . D 3 -20.798 18.205 13.12 1 40.6 ? CAH HWA 203 A 1 HETATM 10 O OAL HWA . . . D 3 -21.247 18.306 11.954 1 40.68 ? OAL HWA 203 A 1 HETATM 11 C CAI HWA . . . D 3 -19.667 17.419 13.472 1 37.75 ? CAI HWA 203 A 1 HETATM 12 O OAJ HWA . . . D 3 -19.032 16.703 12.522 1 37.23 ? OAJ HWA 203 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 12 #