data_6E7B # _model_server_result.job_id ExPd3wTYBjhaha2Qpw2HMA _model_server_result.datetime_utc '2024-11-05 00:04:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 6E7B # _exptl.entry_id 6E7B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6E7B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 143 B THR 143 1_555 C MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc2 C MG MG . B MG 501 1_555 D O1B G2P . B G2P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc3 C MG MG . B MG 501 1_555 D O1G G2P . B G2P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc4 C MG MG . B MG 501 1_555 D O3G G2P . B G2P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc5 C MG MG . B MG 501 1_555 D O3B G2P . B G2P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc6 C MG MG . B MG 501 1_555 D O2B G2P . B G2P 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc7 B OE1 GLU 71 A GLU 71 1_555 E MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc8 E MG MG . A MG 501 1_555 F O2B GTP . A GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc9 E MG MG . A MG 501 1_555 F O3G GTP . A GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc10 E MG MG . A MG 501 1_555 F O3B GTP . A GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? metalc ? metalc11 E MG MG . A MG 501 1_555 F O1B GTP . A GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 181 n n PG O2G GTP sing 182 n n PG O3G GTP sing 183 n n PG O3B GTP sing 184 n n O2G HOG2 GTP sing 185 n n O3G HOG3 GTP sing 186 n n O3B PB GTP sing 187 n n PB O1B GTP doub 188 n n PB O2B GTP sing 189 n n PB O3A GTP sing 190 n n O2B HOB2 GTP sing 191 n n O3A PA GTP sing 192 n n PA O1A GTP doub 193 n n PA O2A GTP sing 194 n n PA O5' GTP sing 195 n n O2A HOA2 GTP sing 196 n n O5' C5' GTP sing 197 n n C5' C4' GTP sing 198 n n C5' H5' GTP sing 199 n n C5' "H5''" GTP sing 200 n n C4' O4' GTP sing 201 n n C4' C3' GTP sing 202 n n C4' H4' GTP sing 203 n n O4' C1' GTP sing 204 n n C3' O3' GTP sing 205 n n C3' C2' GTP sing 206 n n C3' H3' GTP sing 207 n n O3' HO3' GTP sing 208 n n C2' O2' GTP sing 209 n n C2' C1' GTP sing 210 n n C2' H2' GTP sing 211 n n O2' HO2' GTP sing 212 n n C1' N9 GTP sing 213 n n C1' H1' GTP sing 214 n n N9 C8 GTP sing 215 n y N9 C4 GTP sing 216 n y C8 N7 GTP doub 217 n y C8 H8 GTP sing 218 n n N7 C5 GTP sing 219 n y C5 C6 GTP sing 220 n n C5 C4 GTP doub 221 n y C6 O6 GTP doub 222 n n C6 N1 GTP sing 223 n n N1 C2 GTP sing 224 n n N1 HN1 GTP sing 225 n n C2 N2 GTP sing 226 n n C2 N3 GTP doub 227 n n N2 HN21 GTP sing 228 n n N2 HN22 GTP sing 229 n n N3 C4 GTP sing 230 n n # _atom_sites.entry_id 6E7B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG B 1 501 503 MG MG . D 4 G2P B 1 502 2 G2P G2P . E 3 MG A 1 501 502 MG MG . F 5 GTP A 1 502 1 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . F 5 102.741 40.581 32.538 1 51.03 ? PG GTP 502 A 1 HETATM 2 O O1G GTP . . . F 5 103.83 39.681 32.008 1 51.03 ? O1G GTP 502 A 1 HETATM 3 O O2G GTP . . . F 5 103.077 42.052 32.515 1 51.03 ? O2G GTP 502 A 1 HETATM 4 O O3G GTP . . . F 5 101.356 40.242 32.043 1 51.03 ? O3G GTP 502 A 1 HETATM 5 O O3B GTP . . . F 5 102.684 40.211 34.098 1 51.03 ? O3B GTP 502 A 1 HETATM 6 P PB GTP . . . F 5 102.014 38.82 34.527 1 51.03 ? PB GTP 502 A 1 HETATM 7 O O1B GTP . . . F 5 101.942 37.955 33.296 1 51.03 ? O1B GTP 502 A 1 HETATM 8 O O2B GTP . . . F 5 100.757 39.116 35.305 1 51.03 ? O2B GTP 502 A 1 HETATM 9 O O3A GTP . . . F 5 103.113 38.209 35.528 1 51.03 ? O3A GTP 502 A 1 HETATM 10 P PA GTP . . . F 5 102.947 36.696 36.04 1 51.03 ? PA GTP 502 A 1 HETATM 11 O O1A GTP . . . F 5 102.258 35.911 34.951 1 51.03 ? O1A GTP 502 A 1 HETATM 12 O O2A GTP . . . F 5 102.328 36.752 37.415 1 51.03 ? O2A GTP 502 A 1 HETATM 13 O O5' GTP . . . F 5 104.475 36.21 36.206 1 51.03 ? O5' GTP 502 A 1 HETATM 14 C C5' GTP . . . F 5 104.937 34.951 35.711 1 51.03 ? C5' GTP 502 A 1 HETATM 15 C C4' GTP . . . F 5 105.392 34.068 36.864 1 51.03 ? C4' GTP 502 A 1 HETATM 16 O O4' GTP . . . F 5 104.325 33.923 37.799 1 51.03 ? O4' GTP 502 A 1 HETATM 17 C C3' GTP . . . F 5 105.774 32.68 36.375 1 51.03 ? C3' GTP 502 A 1 HETATM 18 O O3' GTP . . . F 5 107.151 32.413 36.656 1 51.03 ? O3' GTP 502 A 1 HETATM 19 C C2' GTP . . . F 5 104.873 31.713 37.113 1 51.03 ? C2' GTP 502 A 1 HETATM 20 O O2' GTP . . . F 5 105.638 30.705 37.776 1 51.03 ? O2' GTP 502 A 1 HETATM 21 C C1' GTP . . . F 5 104.115 32.55 38.124 1 51.03 ? C1' GTP 502 A 1 HETATM 22 N N9 GTP . . . F 5 102.665 32.266 38.087 1 51.03 ? N9 GTP 502 A 1 HETATM 23 C C8 GTP . . . F 5 101.813 32.718 37.153 1 51.03 ? C8 GTP 502 A 1 HETATM 24 N N7 GTP . . . F 5 100.553 32.288 37.409 1 51.03 ? N7 GTP 502 A 1 HETATM 25 C C5 GTP . . . F 5 100.599 31.553 38.53 1 51.03 ? C5 GTP 502 A 1 HETATM 26 C C6 GTP . . . F 5 99.627 30.811 39.351 1 51.03 ? C6 GTP 502 A 1 HETATM 27 O O6 GTP . . . F 5 98.425 30.774 39.034 1 51.03 ? O6 GTP 502 A 1 HETATM 28 N N1 GTP . . . F 5 100.068 30.175 40.437 1 51.03 ? N1 GTP 502 A 1 HETATM 29 C C2 GTP . . . F 5 101.361 30.195 40.803 1 51.03 ? C2 GTP 502 A 1 HETATM 30 N N2 GTP . . . F 5 101.728 29.525 41.922 1 51.03 ? N2 GTP 502 A 1 HETATM 31 N N3 GTP . . . F 5 102.312 30.859 40.099 1 51.03 ? N3 GTP 502 A 1 HETATM 32 C C4 GTP . . . F 5 101.993 31.541 38.976 1 51.03 ? C4 GTP 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #