data_6E7K # _model_server_result.job_id vk7N5M73ke86xc-ta4sqYw _model_server_result.datetime_utc '2024-11-01 05:25:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e7k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":504}' # _entry.id 6E7K # _exptl.entry_id 6E7K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6E7K _cell.length_a 101.948 _cell.length_b 153.206 _cell.length_c 95.783 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E7K _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,H,K,L,N 1 1 B,D,G,I,J,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 K N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 4 4 1 FUC NAG C1 O1 . O6 HO6 . sing 6 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 7 ? 5 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 1100 NAG 3 n E NAG 2 E 2 NAG A 1101 NAG 3 n E BMA 3 E 3 BMA A 1102 BMA 4 n F NAG 1 F 1 NAG A 1000 NAG 4 n F NAG 2 F 2 NAG A 1002 NAG 4 n F BMA 3 F 3 BMA A 1003 BMA 4 n F FUC 4 F 4 FUC A 1001 FUC 5 n G NAG 1 G 1 NAG B 1000 NAG 5 n G NAG 2 G 2 NAG B 2002 NAG 5 n G FUC 3 G 3 FUC B 2001 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 54 1_555 A SG CYS 40 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf2 A SG CYS 216 A CYS 243 1_555 A SG CYS 239 A CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? disulf ? disulf3 A SG CYS 264 A CYS 291 1_555 A SG CYS 275 A CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf4 A SG CYS 278 A CYS 305 1_555 A SG CYS 283 A CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? disulf ? disulf5 A SG CYS 418 A CYS 445 1_555 A SG CYS 438 A CYS 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? disulf ? disulf6 B SG CYS 27 B CYS 54 1_555 B SG CYS 40 B CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf7 B SG CYS 216 B CYS 243 1_555 B SG CYS 239 B CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? disulf ? disulf8 B SG CYS 264 B CYS 291 1_555 B SG CYS 275 B CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf9 B SG CYS 278 B CYS 305 1_555 B SG CYS 283 B CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf10 B SG CYS 418 B CYS 445 1_555 B SG CYS 438 B CYS 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? disulf ? disulf11 C SG CYS 48 C CYS 68 1_555 C SG CYS 57 C CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf12 C SG CYS 63 C CYS 83 1_555 C SG CYS 90 C CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf13 C SG CYS 69 C CYS 89 1_555 C SG CYS 111 C CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? disulf ? disulf14 C SG CYS 69 C CYS 89 1_555 C SG CYS 116 C CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? disulf ? disulf15 C SG CYS 94 C CYS 114 1_555 C SG CYS 110 C CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf16 C SG CYS 111 C CYS 131 1_555 C SG CYS 116 C CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf17 D SG CYS 45 D CYS 65 1_555 D SG CYS 69 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf18 D SG CYS 48 D CYS 68 1_555 D SG CYS 57 D CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf19 D SG CYS 63 D CYS 83 1_555 D SG CYS 90 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? disulf ? disulf20 D SG CYS 94 D CYS 114 1_555 D SG CYS 110 D CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? disulf ? disulf21 D SG CYS 111 D CYS 131 1_555 D SG CYS 116 D CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? covale ? covale1 A ND2 ASN 43 A ASN 70 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 359 A ASN 386 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale3 B ND2 ASN 43 B ASN 70 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 B ND2 ASN 359 B ASN 386 1_555 I C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale5 C ND2 ASN 58 C ASN 78 1_555 K C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale7 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale9 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale10 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale11 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale12 G O6 NAG . G NAG 1 1_555 G C1 FUC . G FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? metalc ? metalc1 A O ALA 167 A ALA 194 1_555 H CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc2 A O ARG 170 A ARG 197 1_555 H CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc3 A OG SER 172 A SER 199 1_555 H CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc4 A OD1 ASP 175 A ASP 202 1_555 H CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc5 A OD2 ASP 175 A ASP 202 1_555 H CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc6 H CA CA . A CA 501 1_555 L O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc7 H CA CA . A CA 501 1_555 L O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc8 B O ALA 167 B ALA 194 1_555 J CA CA . B CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc9 B O ARG 170 B ARG 197 1_555 J CA CA . B CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc10 B OG SER 172 B SER 199 1_555 J CA CA . B CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc11 B OD1 ASP 175 B ASP 202 1_555 J CA CA . B CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc12 B OD2 ASP 175 B ASP 202 1_555 J CA CA . B CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc13 J CA CA . B CA 505 1_555 M O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc14 J CA CA . B CA 505 1_555 M O HOH . B HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 284 n n C1 O1 NAG sing 285 n n C1 O5 NAG sing 286 n n C1 H1 NAG sing 287 n n C2 C3 NAG sing 288 n n C2 N2 NAG sing 289 n n C2 H2 NAG sing 290 n n C3 C4 NAG sing 291 n n C3 O3 NAG sing 292 n n C3 H3 NAG sing 293 n n C4 C5 NAG sing 294 n n C4 O4 NAG sing 295 n n C4 H4 NAG sing 296 n n C5 C6 NAG sing 297 n n C5 O5 NAG sing 298 n n C5 H5 NAG sing 299 n n C6 O6 NAG sing 300 n n C6 H61 NAG sing 301 n n C6 H62 NAG sing 302 n n C7 C8 NAG sing 303 n n C7 N2 NAG sing 304 n n C7 O7 NAG doub 305 n n C8 H81 NAG sing 306 n n C8 H82 NAG sing 307 n n C8 H83 NAG sing 308 n n N2 HN2 NAG sing 309 n n O1 HO1 NAG sing 310 n n O3 HO3 NAG sing 311 n n O4 HO4 NAG sing 312 n n O6 HO6 NAG sing 313 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6E7K _atom_sites.fract_transf_matrix[1][1] 0.009809 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 6 CA A 1 501 2000 CA CA . I 7 NAG B 1 504 1100 NAG NAG . J 6 CA B 1 505 2000 CA CA . K 7 NAG C 1 201 1020 NAG NAG . L 8 HOH A 1 601 504 HOH HOH . L 8 HOH A 2 602 503 HOH HOH . L 8 HOH A 3 603 505 HOH HOH . L 8 HOH A 4 604 500 HOH HOH . L 8 HOH A 5 605 502 HOH HOH . M 8 HOH B 1 601 502 HOH HOH . M 8 HOH B 2 602 508 HOH HOH . M 8 HOH B 3 603 504 HOH HOH . M 8 HOH B 4 604 503 HOH HOH . M 8 HOH B 5 605 507 HOH HOH . M 8 HOH B 6 606 500 HOH HOH . M 8 HOH B 7 607 505 HOH HOH . M 8 HOH B 8 608 506 HOH HOH . M 8 HOH B 9 609 501 HOH HOH . N 8 HOH C 1 501 501 HOH HOH . O 8 HOH D 1 201 507 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 7 -8.169 37.434 28.026 1 110.76 ? C1 NAG 504 B 1 HETATM 2 C C2 NAG . . . I 7 -7.227 38.014 29.079 1 117.32 ? C2 NAG 504 B 1 HETATM 3 C C3 NAG . . . I 7 -7.986 38.448 30.327 1 124.48 ? C3 NAG 504 B 1 HETATM 4 C C4 NAG . . . I 7 -8.914 39.598 29.944 1 125.5 ? C4 NAG 504 B 1 HETATM 5 C C5 NAG . . . I 7 -9.872 39.184 28.807 1 121.5 ? C5 NAG 504 B 1 HETATM 6 C C6 NAG . . . I 7 -10.058 40.327 27.796 1 122.3 ? C6 NAG 504 B 1 HETATM 7 C C7 NAG . . . I 7 -4.935 37.164 28.916 1 111.69 ? C7 NAG 504 B 1 HETATM 8 C C8 NAG . . . I 7 -3.978 36.07 29.306 1 108.15 ? C8 NAG 504 B 1 HETATM 9 N N2 NAG . . . I 7 -6.183 37.048 29.397 1 114.33 ? N2 NAG 504 B 1 HETATM 10 O O3 NAG . . . I 7 -7.069 38.895 31.334 1 123.82 ? O3 NAG 504 B 1 HETATM 11 O O4 NAG . . . I 7 -9.646 40.07 31.099 1 127.39 ? O4 NAG 504 B 1 HETATM 12 O O5 NAG . . . I 7 -9.517 37.961 28.097 1 115.48 ? O5 NAG 504 B 1 HETATM 13 O O6 NAG . . . I 7 -11.417 40.798 27.787 1 120.72 ? O6 NAG 504 B 1 HETATM 14 O O7 NAG . . . I 7 -4.576 38.09 28.193 1 107.35 ? O7 NAG 504 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #