data_6E7M
#
_model_server_result.job_id            -dHwSHN3VC9E-czO-DxMDw 
_model_server_result.datetime_utc      '2024-11-15 14:54:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6e7m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":203}' 
#
_entry.id    6E7M 
#
_exptl.entry_id    6E7M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6E7M 
_cell.length_a            67.739 
_cell.length_b            72.067 
_cell.length_c            112.252 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6E7M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,M,N,O,P,Q,R,V,X 1 1 
B,D,K,L,S,T,U,W,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             U 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 C SG CYS 28 C CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 28 B CYS 28 1_555 D SG CYS 28 D CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 D NZ LYS 108 D LYS 108 1_555 U C15 RET . D RET 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 279 n n 
C1 C6 RET sing 280 n n 
C1 C16 RET sing 281 n n 
C1 C17 RET sing 282 n n 
C2 C3 RET sing 283 n n 
C2 H21 RET sing 284 n n 
C2 H22 RET sing 285 n n 
C3 C4 RET sing 286 n n 
C3 H31 RET sing 287 n n 
C3 H32 RET sing 288 n n 
C4 C5 RET sing 289 n n 
C4 H41 RET sing 290 n n 
C4 H42 RET sing 291 n n 
C5 C6 RET doub 292 n n 
C5 C18 RET sing 293 n n 
C6 C7 RET sing 294 n n 
C7 C8 RET doub 295 e n 
C7 H7 RET sing 296 n n 
C8 C9 RET sing 297 n n 
C8 H8 RET sing 298 n n 
C9 C10 RET doub 299 e n 
C9 C19 RET sing 300 n n 
C10 C11 RET sing 301 n n 
C10 H10 RET sing 302 n n 
C11 C12 RET doub 303 e n 
C11 H11 RET sing 304 n n 
C12 C13 RET sing 305 n n 
C12 H12 RET sing 306 n n 
C13 C14 RET doub 307 e n 
C13 C20 RET sing 308 n n 
C14 C15 RET sing 309 n n 
C14 H14 RET sing 310 n n 
C15 O1 RET doub 311 n n 
C15 H15 RET sing 312 n n 
C16 H161 RET sing 313 n n 
C16 H162 RET sing 314 n n 
C16 H163 RET sing 315 n n 
C17 H171 RET sing 316 n n 
C17 H172 RET sing 317 n n 
C17 H173 RET sing 318 n n 
C18 H181 RET sing 319 n n 
C18 H182 RET sing 320 n n 
C18 H183 RET sing 321 n n 
C19 H191 RET sing 322 n n 
C19 H192 RET sing 323 n n 
C19 H193 RET sing 324 n n 
C20 H201 RET sing 325 n n 
C20 H202 RET sing 326 n n 
C20 H203 RET sing 327 n n 
#
_atom_sites.entry_id                     6E7M 
_atom_sites.fract_transf_matrix[1][1]    0.014763 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013876 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008909 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ACT A 1 201 4 ACT ACT . 
F 2 ACT A 1 202 13 ACT ACT . 
G 2 ACT A 1 203 19 ACT ACT . 
H 3 GOL A 1 204 1 GOL GOL . 
I 3 GOL A 1 205 2 GOL GOL . 
J 3 GOL A 1 206 10 GOL GOL . 
K 2 ACT B 1 201 6 ACT ACT . 
L 3 GOL B 1 202 4 GOL GOL . 
M 2 ACT C 1 201 5 ACT ACT . 
N 2 ACT C 1 202 8 ACT ACT . 
O 2 ACT C 1 203 9 ACT ACT . 
P 2 ACT C 1 204 10 ACT ACT . 
Q 2 ACT C 1 205 12 ACT ACT . 
R 3 GOL C 1 206 6 GOL GOL . 
S 2 ACT D 1 201 15 ACT ACT . 
T 3 GOL D 1 202 3 GOL GOL . 
U 4 RET D 1 203 10 RET RET . 
V 5 HOH A 1 301 45 HOH HOH . 
V 5 HOH A 2 302 11 HOH HOH . 
V 5 HOH A 3 303 2 HOH HOH . 
V 5 HOH A 4 304 5 HOH HOH . 
V 5 HOH A 5 305 6 HOH HOH . 
V 5 HOH A 6 306 35 HOH HOH . 
V 5 HOH A 7 307 15 HOH HOH . 
V 5 HOH A 8 308 49 HOH HOH . 
W 5 HOH B 1 301 18 HOH HOH . 
W 5 HOH B 2 302 25 HOH HOH . 
W 5 HOH B 3 303 23 HOH HOH . 
W 5 HOH B 4 304 48 HOH HOH . 
X 5 HOH C 1 301 9 HOH HOH . 
X 5 HOH C 2 302 4 HOH HOH . 
X 5 HOH C 3 303 17 HOH HOH . 
X 5 HOH C 4 304 32 HOH HOH . 
X 5 HOH C 5 305 3 HOH HOH . 
X 5 HOH C 6 306 46 HOH HOH . 
X 5 HOH C 7 307 7 HOH HOH . 
X 5 HOH C 8 308 36 HOH HOH . 
X 5 HOH C 9 309 10 HOH HOH . 
Y 5 HOH D 1 301 28 HOH HOH . 
Y 5 HOH D 2 302 12 HOH HOH . 
Y 5 HOH D 3 303 42 HOH HOH . 
Y 5 HOH D 4 304 24 HOH HOH . 
Y 5 HOH D 5 305 47 HOH HOH . 
Y 5 HOH D 6 306 34 HOH HOH . 
Y 5 HOH D 7 307 51 HOH HOH . 
Y 5 HOH D 8 308 43 HOH HOH . 
Y 5 HOH D 9 309 20 HOH HOH . 
Y 5 HOH D 10 310 39 HOH HOH . 
Y 5 HOH D 11 311 27 HOH HOH . 
Y 5 HOH D 12 312 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . U 4 12.975 19.633 -26.236 1 55.45 ? C1 RET 203 D 1 
HETATM 2 C C2 RET . . . U 4 14.424 19.721 -25.748 1 56.35 ? C2 RET 203 D 1 
HETATM 3 C C3 RET . . . U 4 14.827 18.599 -24.796 1 59.26 ? C3 RET 203 D 1 
HETATM 4 C C4 RET . . . U 4 14.496 17.211 -25.322 1 54.21 ? C4 RET 203 D 1 
HETATM 5 C C5 RET . . . U 4 13.561 17.215 -26.489 1 57.38 ? C5 RET 203 D 1 
HETATM 6 C C6 RET . . . U 4 12.687 18.208 -26.699 1 51.01 ? C6 RET 203 D 1 
HETATM 7 C C7 RET . . . U 4 11.364 17.942 -27.219 1 50.5 ? C7 RET 203 D 1 
HETATM 8 C C8 RET . . . U 4 10.472 17.3 -26.53 1 49.46 ? C8 RET 203 D 1 
HETATM 9 C C9 RET . . . U 4 9.153 16.881 -26.904 1 54.99 ? C9 RET 203 D 1 
HETATM 10 C C10 RET . . . U 4 8.91 15.543 -26.836 1 55.4 ? C10 RET 203 D 1 
HETATM 11 C C11 RET . . . U 4 7.698 14.814 -27.09 1 44.97 ? C11 RET 203 D 1 
HETATM 12 C C12 RET . . . U 4 7.688 13.497 -27.369 1 55.14 ? C12 RET 203 D 1 
HETATM 13 C C13 RET . . . U 4 6.542 12.65 -27.555 1 56.25 ? C13 RET 203 D 1 
HETATM 14 C C14 RET . . . U 4 6.726 11.32 -27.741 1 55.53 ? C14 RET 203 D 1 
HETATM 15 C C15 RET . . . U 4 5.717 10.292 -27.876 1 48.3 ? C15 RET 203 D 1 
HETATM 16 C C16 RET . . . U 4 12.756 20.624 -27.384 1 44.33 ? C16 RET 203 D 1 
HETATM 17 C C17 RET . . . U 4 12.057 20.014 -25.07 1 56.93 ? C17 RET 203 D 1 
HETATM 18 C C18 RET . . . U 4 13.583 15.93 -27.274 1 62.79 ? C18 RET 203 D 1 
HETATM 19 C C19 RET . . . U 4 8.166 17.926 -27.355 1 51.38 ? C19 RET 203 D 1 
HETATM 20 C C20 RET . . . U 4 5.193 13.283 -27.44 1 48.18 ? C20 RET 203 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           20 
#