data_6E7M # _model_server_result.job_id lP1nOB1IAOG455c3aGFaVg _model_server_result.datetime_utc '2024-11-15 15:03:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":205}' # _entry.id 6E7M # _exptl.entry_id 6E7M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6E7M _cell.length_a 67.739 _cell.length_b 72.067 _cell.length_c 112.252 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,M,N,O,P,Q,R,V,X 1 1 B,D,K,L,S,T,U,W,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N ? 3 L N N ? 3 R N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 C SG CYS 28 C CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 28 B CYS 28 1_555 D SG CYS 28 D CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 D NZ LYS 108 D LYS 108 1_555 U C15 RET . D RET 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 6E7M _atom_sites.fract_transf_matrix[1][1] 0.014763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ACT A 1 201 4 ACT ACT . F 2 ACT A 1 202 13 ACT ACT . G 2 ACT A 1 203 19 ACT ACT . H 3 GOL A 1 204 1 GOL GOL . I 3 GOL A 1 205 2 GOL GOL . J 3 GOL A 1 206 10 GOL GOL . K 2 ACT B 1 201 6 ACT ACT . L 3 GOL B 1 202 4 GOL GOL . M 2 ACT C 1 201 5 ACT ACT . N 2 ACT C 1 202 8 ACT ACT . O 2 ACT C 1 203 9 ACT ACT . P 2 ACT C 1 204 10 ACT ACT . Q 2 ACT C 1 205 12 ACT ACT . R 3 GOL C 1 206 6 GOL GOL . S 2 ACT D 1 201 15 ACT ACT . T 3 GOL D 1 202 3 GOL GOL . U 4 RET D 1 203 10 RET RET . V 5 HOH A 1 301 45 HOH HOH . V 5 HOH A 2 302 11 HOH HOH . V 5 HOH A 3 303 2 HOH HOH . V 5 HOH A 4 304 5 HOH HOH . V 5 HOH A 5 305 6 HOH HOH . V 5 HOH A 6 306 35 HOH HOH . V 5 HOH A 7 307 15 HOH HOH . V 5 HOH A 8 308 49 HOH HOH . W 5 HOH B 1 301 18 HOH HOH . W 5 HOH B 2 302 25 HOH HOH . W 5 HOH B 3 303 23 HOH HOH . W 5 HOH B 4 304 48 HOH HOH . X 5 HOH C 1 301 9 HOH HOH . X 5 HOH C 2 302 4 HOH HOH . X 5 HOH C 3 303 17 HOH HOH . X 5 HOH C 4 304 32 HOH HOH . X 5 HOH C 5 305 3 HOH HOH . X 5 HOH C 6 306 46 HOH HOH . X 5 HOH C 7 307 7 HOH HOH . X 5 HOH C 8 308 36 HOH HOH . X 5 HOH C 9 309 10 HOH HOH . Y 5 HOH D 1 301 28 HOH HOH . Y 5 HOH D 2 302 12 HOH HOH . Y 5 HOH D 3 303 42 HOH HOH . Y 5 HOH D 4 304 24 HOH HOH . Y 5 HOH D 5 305 47 HOH HOH . Y 5 HOH D 6 306 34 HOH HOH . Y 5 HOH D 7 307 51 HOH HOH . Y 5 HOH D 8 308 43 HOH HOH . Y 5 HOH D 9 309 20 HOH HOH . Y 5 HOH D 10 310 39 HOH HOH . Y 5 HOH D 11 311 27 HOH HOH . Y 5 HOH D 12 312 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 3 0.539 15.127 -0.141 1 49.19 ? C1 GOL 205 A 1 HETATM 2 O O1 GOL . . . I 3 -0.565 14.671 0.609 1 48.21 ? O1 GOL 205 A 1 HETATM 3 C C2 GOL . . . I 3 0.092 15.446 -1.562 1 50.43 ? C2 GOL 205 A 1 HETATM 4 O O2 GOL . . . I 3 -1.317 15.472 -1.619 1 51.32 ? O2 GOL 205 A 1 HETATM 5 C C3 GOL . . . I 3 0.62 14.375 -2.51 1 52.96 ? C3 GOL 205 A 1 HETATM 6 O O3 GOL . . . I 3 2.028 14.432 -2.55 1 49.61 ? O3 GOL 205 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #