data_6E7P # _model_server_result.job_id ZohP2pVavW6wGVpKBASG1A _model_server_result.datetime_utc '2024-10-19 12:35:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6e7p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 6E7P # _exptl.entry_id 6E7P _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 750.598 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2S,3S,4R,5S,6R)-5-{[(R)-[(2R)-2,3-bis{[(1S)-1-hydroxyoctyl]oxy}propoxy](hydroxy)phosphoryl]oxy}-2,4,6-trihydroxycyclohexane-1,3-diyl bis[dihydrogen (phosphate)]' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 166 A CYS 166 1_555 A SG CYS 192 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 253 A CYS 253 1_555 A SG CYS 284 A CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 B SG CYS 166 B CYS 166 1_555 B SG CYS 192 B CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 253 B CYS 253 1_555 B SG CYS 284 B CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 C SG CYS 166 C CYS 166 1_555 C SG CYS 192 C CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 C SG CYS 253 C CYS 253 1_555 C SG CYS 284 C CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 D SG CYS 166 D CYS 166 1_555 D SG CYS 192 D CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 D SG CYS 253 D CYS 253 1_555 D SG CYS 284 D CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C25 H53 O19 P3' _chem_comp.formula_weight 750.598 _chem_comp.id HZ7 _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,2S,3S,4R,5S,6R)-5-{[(R)-[(2R)-2,3-bis{[(1S)-1-hydroxyoctyl]oxy}propoxy](hydroxy)phosphoryl]oxy}-2,4,6-trihydroxycyclohexane-1,3-diyl bis[dihydrogen (phosphate)]' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6E7P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HZ7 A 1 801 801 HZ7 PIP . F 2 HZ7 B 1 801 801 HZ7 PIP . G 2 HZ7 C 1 801 801 HZ7 PIP . H 2 HZ7 D 1 801 801 HZ7 PIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 HZ7 . . . E 2 202.495 161.162 178.952 1 144.3 ? C2 HZ7 801 A 1 HETATM 2 C C3 HZ7 . . . E 2 203.962 161.457 179.251 1 144.3 ? C3 HZ7 801 A 1 HETATM 3 C C4 HZ7 . . . E 2 204.294 161.251 180.724 1 144.3 ? C4 HZ7 801 A 1 HETATM 4 C C5 HZ7 . . . E 2 203.75 159.974 181.377 1 144.3 ? C5 HZ7 801 A 1 HETATM 5 C C6 HZ7 . . . E 2 202.8 159.127 180.517 1 144.3 ? C6 HZ7 801 A 1 HETATM 6 C C1 HZ7 . . . E 2 201.841 159.999 179.703 1 144.3 ? C1 HZ7 801 A 1 HETATM 7 C C10 HZ7 . . . E 2 210.557 159.478 183.022 1 144.3 ? C10 HZ7 801 A 1 HETATM 8 C C11 HZ7 . . . E 2 210.89 160.63 182.079 1 144.3 ? C11 HZ7 801 A 1 HETATM 9 C C12 HZ7 . . . E 2 207.757 160.911 186.774 1 144.3 ? C12 HZ7 801 A 1 HETATM 10 C C13 HZ7 . . . E 2 208.805 160.029 187.448 1 144.3 ? C13 HZ7 801 A 1 HETATM 11 C C14 HZ7 . . . E 2 212.302 161.161 182.296 1 144.3 ? C14 HZ7 801 A 1 HETATM 12 C C15 HZ7 . . . E 2 212.51 162.454 181.521 1 144.3 ? C15 HZ7 801 A 1 HETATM 13 C C16 HZ7 . . . E 2 212.75 162.189 180.043 1 144.3 ? C16 HZ7 801 A 1 HETATM 14 C C17 HZ7 . . . E 2 214.205 161.818 179.799 1 144.3 ? C17 HZ7 801 A 1 HETATM 15 C C18 HZ7 . . . E 2 214.542 161.908 178.317 1 144.3 ? C18 HZ7 801 A 1 HETATM 16 C C19 HZ7 . . . E 2 214.354 163.315 177.798 1 144.3 ? C19 HZ7 801 A 1 HETATM 17 C C20 HZ7 . . . E 2 209.591 160.832 188.476 1 144.3 ? C20 HZ7 801 A 1 HETATM 18 C C21 HZ7 . . . E 2 210.871 160.111 188.877 1 144.3 ? C21 HZ7 801 A 1 HETATM 19 C C22 HZ7 . . . E 2 211.742 159.823 187.663 1 144.3 ? C22 HZ7 801 A 1 HETATM 20 C C23 HZ7 . . . E 2 213.215 159.96 188.021 1 144.3 ? C23 HZ7 801 A 1 HETATM 21 C C24 HZ7 . . . E 2 214.086 159.883 186.775 1 144.3 ? C24 HZ7 801 A 1 HETATM 22 C C25 HZ7 . . . E 2 213.727 160.976 185.793 1 144.3 ? C25 HZ7 801 A 1 HETATM 23 C C7 HZ7 . . . E 2 207.282 160.729 182.862 1 144.3 ? C7 HZ7 801 A 1 HETATM 24 C C8 HZ7 . . . E 2 208.372 160.093 183.717 1 144.3 ? C8 HZ7 801 A 1 HETATM 25 C C9 HZ7 . . . E 2 207.732 159.345 184.881 1 144.3 ? C9 HZ7 801 A 1 HETATM 26 O O1 HZ7 . . . E 2 203.52 158.224 179.67 1 144.3 ? O1 HZ7 801 A 1 HETATM 27 O O10 HZ7 . . . E 2 198.983 158.652 177.531 1 144.3 ? O10 HZ7 801 A 1 HETATM 28 O O11 HZ7 . . . E 2 199.28 160.928 178.459 1 144.3 ? O11 HZ7 801 A 1 HETATM 29 O O12 HZ7 . . . E 2 200.574 160.18 176.476 1 144.3 ? O12 HZ7 801 A 1 HETATM 30 O O13 HZ7 . . . E 2 206.022 162.846 177.916 1 144.3 ? O13 HZ7 801 A 1 HETATM 31 O O14 HZ7 . . . E 2 206.307 160.962 176.361 1 144.3 ? O14 HZ7 801 A 1 HETATM 32 O O15 HZ7 . . . E 2 207.35 160.905 178.617 1 144.3 ? O15 HZ7 801 A 1 HETATM 33 O O16 HZ7 . . . E 2 207.016 160.237 185.741 1 144.3 ? O16 HZ7 801 A 1 HETATM 34 O O17 HZ7 . . . E 2 209.159 159.185 182.949 1 144.3 ? O17 HZ7 801 A 1 HETATM 35 O O18 HZ7 . . . E 2 210.936 159.823 184.361 1 144.3 ? O18 HZ7 801 A 1 HETATM 36 O O19 HZ7 . . . E 2 208.387 162.103 186.287 1 144.3 ? O19 HZ7 801 A 1 HETATM 37 O O2 HZ7 . . . E 2 201.135 159.179 178.772 1 144.3 ? O2 HZ7 801 A 1 HETATM 38 O O3 HZ7 . . . E 2 204.794 159.175 181.957 1 144.3 ? O3 HZ7 801 A 1 HETATM 39 O O4 HZ7 . . . E 2 204.811 160.692 178.398 1 144.3 ? O4 HZ7 801 A 1 HETATM 40 O O5 HZ7 . . . E 2 201.733 162.334 179.248 1 144.3 ? O5 HZ7 801 A 1 HETATM 41 O O6 HZ7 . . . E 2 203.745 162.357 181.441 1 144.3 ? O6 HZ7 801 A 1 HETATM 42 O O7 HZ7 . . . E 2 206.102 158.597 179.853 1 144.3 ? O7 HZ7 801 A 1 HETATM 43 O O8 HZ7 . . . E 2 207.233 160.126 181.573 1 144.3 ? O8 HZ7 801 A 1 HETATM 44 O O9 HZ7 . . . E 2 206.85 157.677 181.992 1 144.3 ? O9 HZ7 801 A 1 HETATM 45 P P1 HZ7 . . . E 2 206.247 158.883 181.323 1 144.3 ? P1 HZ7 801 A 1 HETATM 46 P P2 HZ7 . . . E 2 199.983 159.75 177.793 1 144.3 ? P2 HZ7 801 A 1 HETATM 47 P P3 HZ7 . . . E 2 206.156 161.351 177.81 1 144.3 ? P3 HZ7 801 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 47 #